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5
votes
1
answer
155
views
6 follow
1
answer
GDC server down???
tcgabiolinks array methylation gdc written 3 days ago by Gabriel Wajnberg • 50 • updated 2 days ago by Jade • 20
0
votes
0
answers
65
views
0
answers
Converting UUID downloaded from GDC to TCGA names
phyton gdc written 4 days ago by emiliano.traini • 0
1
vote
1
answer
73
views
1
answer
Find Information about TCGA samples from GDC data portal
tcga gdc sample information rna-seq written 7 days ago by lawarde.ankita1 • 10 • updated 6 days ago by svlachavas • 450
26
votes
2
answers
6.1k
views
2
answers
Tutorial: TCGA UUIDS to TCGA barcode (SampleID) in R
R tutorial next-gen gdc tcga written 20 months ago by martinguerrerog89 • 250 • updated 5 weeks ago by saraholiver307 • 0
0
votes
1
answer
750
views
1
answer
Retrieving UUIDs from TCGA Barcodes in the GDC File Repository
barcode uuid tcga gdc written 10 months ago by jjdan • 0 • updated 5 weeks ago by Kevin Blighe ♦ 21k
0
votes
1
answer
119
views
1
answer
How to change the format of CNV files (.txt) obtained from GDC to accepted formats of Variant Effect Predictor?
gdc cnv converting file format written 7 weeks ago by nazaninhoseinkhan • 240 • updated 7 weeks ago by Kevin Blighe ♦ 21k
6
votes
1
answer
272
views
1
answer
Duplicate samples in TCGA Breast cancer data. Which one to pick?
tcga breast rna-seq gdc written 8 weeks ago by Bioinfo • 200
1
vote
1
answer
133
views
1
answer
How can I download methylation array raw files containing mutation in gene A from GDC legacy archive ?
mutation tcga methylation gdc legacy written 9 weeks ago by Goku • 0 • updated 9 weeks ago by Kevin Blighe ♦ 21k
2
votes
2
answers
386
views
2
answers
Samples with same TCGA barcode in TCGA data
tcga gdc rna-seq written 10 weeks ago by Bioinfo • 200 • updated 10 weeks ago by svlachavas • 450
11
votes
1
answer
612
views
1
answer
Sample names for TCGA data from GDC-legacy archive
tcga gdc rna-seq written 12 weeks ago by Bioinfo • 200 • updated 12 weeks ago by Kevin Blighe ♦ 21k
0
votes
1
answer
192
views
1
answer
Data Discrepency from TCGA-GDC portal and GDC firehose
firehose tcga gdc written 12 weeks ago by David_emir • 280 • updated 12 weeks ago by mbk0asis • 350
1
vote
1
answer
185
views
1
answer
conversion of data.frame object to SummarizedExperiment object
tcgabiolinks R gdc summarizedexperiment written 3 months ago by lawarde.ankita1 • 10 • updated 3 months ago by svlachavas • 450
0
votes
0
answers
199
views
0
answers
help with GDCprepare
tcgabiolinks R gdcprepare gdc written 3 months ago by lawarde.ankita1 • 10
0
votes
0
answers
144
views
0
answers
GDC data for mutation comparison between GBM and LGG using R
tcgabiolinks R gdc mutations tcgaworkflow written 3 months ago by lawarde.ankita1 • 10
4
votes
0
answers
384
views
0
answers
How to get the simple somatic mutation vcf file from GDC data portal?
vcf maf tcgabiolinks gdc mutations written 4 months ago by Bioinfo • 200
2
votes
3
answers
429
views
3
answers
Access of triple negative breast cancer datasets from GDC
gdc triple negative breast cancer written 6 months ago by fawazfebin • 0
3
votes
2
answers
547
views
5 follow
2
answers
GDC API query to map HT-seq FPKM UUID to a Case UUID
R tcga gdc rna-seq written 7 months ago by mattkarikomi • 20
42
votes
6
answers
12k
views
23 follow
6
answers
Protocol To Downlad TCGA Data From GDC
tcga methylation gdc download written 23 months ago by Shicheng Guo • 4.9k • updated 7 months ago by Sean Davis ♦ 24k
0
votes
0
answers
391
views
0
answers
GDC TCGA Metadata no project ID available?
gene expression metadata tcga gdc written 7 months ago by cindy.perscheid • 90
0
votes
1
answer
438
views
1
answer
GDC - count Matrix data
count gdc rna-seq written 7 months ago by David_emir • 280 • updated 7 months ago by svlachavas • 450
2
votes
1
answer
805
views
1
answer
TCGA - COAD read data gene expression analysis
gene expression gdc rna-seq written 7 months ago by David_emir • 280 • updated 7 months ago by svlachavas • 450
0
votes
0
answers
552
views
0
answers
Converting TCGA/GDC IDs
tcga gdc rna-seq written 8 months ago by krc3004 • 0
1
vote
1
answer
616
views
1
answer
Citing data from GDC portal
gdc rna-seq tcga written 8 months ago by noorpratap.singh • 90 • updated 8 months ago by roy.granit • 680
0
votes
0
answers
530
views
0
answers
Job: Scientific Support Analyst, University of Chicago
next-gen phd gdc genomics job written 11 months ago by Danielle • 260
2
votes
1
answer
1.9k
views
1
answer
TCGA/GDC data portal. Clinical features description
firebrowse R tcga gdc clinical written 23 months ago by rbrtdambrosio • 60 • updated 11 months ago by bioInfo • 0
1
vote
0
answers
438
views
0
answers
Question: Mutect 2 and related vcf in TCGA
tcga gdc mutect2 written 12 months ago by salvatore.digiorgio • 10
2
votes
2
answers
1.3k
views
2
answers
GDC Data Transfer Tool for RHEL release 6?
rhel tcga gdc written 18 months ago by biomed_dev • 10 • updated 12 months ago by sandybioteck • 20
1
vote
1
answer
659
views
1
answer
Mutation processing by cbioportal
cbioportab maf tcga gdc written 14 months ago by Arnaud Ceol • 820 • updated 14 months ago by igor ♦ 6.2k
0
votes
0
answers
522
views
0
answers
Question on GDC Legacy RNAseq data
normalization tcgabiolincs tcga gdc rna-seq written 14 months ago by kvougas • 0
0
votes
0
answers
379
views
0
answers
how to know whether the rpm gdc data is pair ended or single ended
gdc rna-seq written 14 months ago by abhideepdey95 • 0
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