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How to decode patient barcode inTCGA database ?
tcga patient gdc written 25 days ago by Björn • 30 • updated 25 days ago by genomax ♦ 54k
2
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1
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147
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1
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GDC portal data download
tcga gdc download gdcportal written 27 days ago by a01039012387 • 10
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1
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85
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GDC portal barcode / metadata
tcga gdc rna-seq written 27 days ago by silvia.casola8 • 0 • updated 27 days ago by noorpratap.singh • 110
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3
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662
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7 follow
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Samples with same TCGA barcode in TCGA data
tcga gdc rna-seq written 4 months ago by Bioinfo • 220 • updated 4 weeks ago by Shixiang • 20
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62
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Clarification on GDC Methylation data
dataset tcga methylation gdc written 5 weeks ago by 9606 • 310
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1
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481
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6 follow
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GDC server down???
tcgabiolinks array methylation gdc written 9 weeks ago by Gabriel Wajnberg • 50 • updated 8 weeks ago by Jade • 20
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116
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Converting UUID downloaded from GDC to TCGA names
phyton gdc written 9 weeks ago by emiliano.traini • 0
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1
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152
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1
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Find Information about TCGA samples from GDC data portal
tcga gdc sample information rna-seq written 9 weeks ago by lawarde.ankita1 • 20 • updated 9 weeks ago by svlachavas • 480
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Tutorial: TCGA UUIDS to TCGA barcode (SampleID) in R
R tutorial next-gen gdc tcga written 22 months ago by martinguerrerog89 • 260 • updated 3 months ago by saraholiver307 • 0
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883
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Retrieving UUIDs from TCGA Barcodes in the GDC File Repository
barcode uuid tcga gdc written 12 months ago by jjdan • 0 • updated 3 months ago by Kevin Blighe ♦ 26k
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1
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164
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How to change the format of CNV files (.txt) obtained from GDC to accepted formats of Variant Effect Predictor?
gdc cnv converting file format written 3 months ago by nazaninhoseinkhan • 260 • updated 3 months ago by Kevin Blighe ♦ 26k
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1
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379
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1
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Duplicate samples in TCGA Breast cancer data. Which one to pick?
tcga breast rna-seq gdc written 3 months ago by Bioinfo • 220
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184
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1
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How can I download methylation array raw files containing mutation in gene A from GDC legacy archive ?
mutation tcga methylation gdc legacy written 4 months ago by Goku • 0 • updated 4 months ago by Kevin Blighe ♦ 26k
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Sample names for TCGA data from GDC-legacy archive
tcga gdc rna-seq written 4 months ago by Bioinfo • 220 • updated 4 months ago by Kevin Blighe ♦ 26k
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285
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1
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Data Discrepency from TCGA-GDC portal and GDC firehose
firehose tcga gdc written 4 months ago by David_emir • 290 • updated 4 months ago by mbk0asis • 360
1
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1
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293
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1
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conversion of data.frame object to SummarizedExperiment object
tcgabiolinks R gdc summarizedexperiment written 5 months ago by lawarde.ankita1 • 20 • updated 5 months ago by svlachavas • 480
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256
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help with GDCprepare
tcgabiolinks R gdcprepare gdc written 5 months ago by lawarde.ankita1 • 20
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184
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GDC data for mutation comparison between GBM and LGG using R
tcgabiolinks R gdc mutations tcgaworkflow written 5 months ago by lawarde.ankita1 • 20
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540
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How to get the simple somatic mutation vcf file from GDC data portal?
vcf maf tcgabiolinks gdc mutations written 6 months ago by Bioinfo • 220
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3
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520
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3
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Access of triple negative breast cancer datasets from GDC
gdc triple negative breast cancer written 8 months ago by fawazfebin • 0
3
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2
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706
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5 follow
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GDC API query to map HT-seq FPKM UUID to a Case UUID
R tcga gdc rna-seq written 9 months ago by mattkarikomi • 20
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6
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13k
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24 follow
6
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Protocol To Downlad TCGA Data From GDC
tcga methylation gdc download written 2.1 years ago by Shicheng Guo • 6.1k • updated 9 months ago by Sean Davis ♦ 24k
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478
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GDC TCGA Metadata no project ID available?
gene expression metadata tcga gdc written 9 months ago by cindy.perscheid • 90
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1
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509
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1
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GDC - count Matrix data
count gdc rna-seq written 9 months ago by David_emir • 290 • updated 9 months ago by svlachavas • 480
2
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1
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996
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1
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TCGA - COAD read data gene expression analysis
gene expression gdc rna-seq written 9 months ago by David_emir • 290 • updated 9 months ago by svlachavas • 480
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674
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Converting TCGA/GDC IDs
tcga gdc rna-seq written 10 months ago by krc3004 • 0
1
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1
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743
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Citing data from GDC portal
gdc rna-seq tcga written 11 months ago by noorpratap.singh • 110 • updated 11 months ago by roy.granit • 740
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Job: Scientific Support Analyst, University of Chicago
next-gen phd gdc genomics job written 13 months ago by Danielle • 260
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1
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2.1k
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TCGA/GDC data portal. Clinical features description
firebrowse R tcga gdc clinical written 2.1 years ago by rbrtdambrosio • 60 • updated 13 months ago by bioInfo • 0
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Question: Mutect 2 and related vcf in TCGA
tcga gdc mutect2 written 14 months ago by salvatore.digiorgio • 10
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