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PanCanAtlas EBPlusPlus-corrected RNA-seq TCGA dataset
ebplusplus tcga gdc rna-seq written 9 days ago by Ld_60 • 30
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146
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Help convert GDC exploration url to API download?
portal mutation gdc written 9 weeks ago by simplitia • 30 • updated 25 days ago by Biostar ♦♦ 20
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Job: Senior Bioinformatician, Genomic Data Commons team at the University of Chicago
bioinformatics job gdc genomics cancer written 29 days ago by Danielle • 300
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Annotation of Methylation data in GDC Portal
dna methylation tcga illumina 450k gdc written 11 weeks ago by noorpratap.singh • 240
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5 follow
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TCGA/GDC FPKM vs FPKM-UQ
gdc rna-seq written 23 months ago by igor ♦ 7.3k • updated 3 months ago by solo7773 • 70
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31 follow
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Tutorial: Protocol To Downlad TCGA Data From GDC
tutorial tcga methylation gdc download written 2.6 years ago by Shicheng Guo • 7.4k • updated 3 months ago by ATpoint ♦ 13k
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GDC TCGA: cannot find CNV files by their UUIDs
uuid tcga gdc cnv written 3 months ago by Ld_60 • 30 • updated 3 months ago by RamRS ♦ 20k
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Using GenomicDataCommons R package to identify cases with both DNA methylation and gene expression data
R gdc rna-seq dna methylation written 4 months ago by rjactonspsfcf • 80
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1
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300
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Firebrowse Data vs GDC Portal Data
firebrowse R tcga gdc cnv written 4 months ago by jmw730 • 0 • updated 4 months ago by Kevin Blighe ♦ 37k
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268
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How to decode patient barcode inTCGA database ?
R tcga patient gdc written 6 months ago by Björn • 40 • updated 5 months ago by zx8754 ♦ 6.5k
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200
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GDC data portal - Tumour and Adjacent normal
dna methylation tcga gdc rna-seq written 5 months ago by rjactonspsfcf • 80 • updated 5 months ago by Kevin Blighe ♦ 37k
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1
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GDC portal data download
tcga gdc download gdcportal written 6 months ago by a01039012387 • 10
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267
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GDC portal barcode / metadata
tcga gdc rna-seq written 6 months ago by silvia.casola8 • 0 • updated 6 months ago by noorpratap.singh • 240
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7 follow
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Samples with same TCGA barcode in TCGA data
tcga gdc rna-seq written 10 months ago by Vasu • 300 • updated 7 months ago by Shixiang • 30
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186
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Clarification on GDC Methylation data
dataset tcga methylation gdc written 7 months ago by 9606 • 310
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7 follow
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GDC server down???
tcgabiolinks array methylation gdc written 8 months ago by Gabriel Wajnberg • 60 • updated 8 months ago by Jade • 40
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350
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Converting UUID downloaded from GDC to TCGA names
phyton gdc written 8 months ago by emiliano.traini • 0
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417
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1
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Find Information about TCGA samples from GDC data portal
tcga gdc sample information rna-seq written 8 months ago by lawarde.ankita1 • 30 • updated 8 months ago by svlachavas • 560
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Tutorial: TCGA UUIDS to TCGA barcode (SampleID) in R
R tutorial next-gen gdc tcga written 2.4 years ago by martinguerrerog89 • 260 • updated 9 months ago by saraholiver307 • 0
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Retrieving UUIDs from TCGA Barcodes in the GDC File Repository
barcode uuid tcga gdc written 18 months ago by jjdan • 0 • updated 9 months ago by Kevin Blighe ♦ 37k
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How to change the format of CNV files (.txt) obtained from GDC to accepted formats of Variant Effect Predictor?
gdc cnv converting file format written 9 months ago by nazaninhoseinkhan • 360 • updated 9 months ago by Kevin Blighe ♦ 37k
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1
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911
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1
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Duplicate samples in TCGA Breast cancer data. Which one to pick?
tcga breast rna-seq gdc written 9 months ago by Vasu • 300
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393
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How can I download methylation array raw files containing mutation in gene A from GDC legacy archive ?
mutation tcga methylation gdc legacy written 10 months ago by Goku • 0 • updated 10 months ago by Kevin Blighe ♦ 37k
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7 follow
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Sample names for TCGA data from GDC-legacy archive
tcga gdc rna-seq written 10 months ago by Vasu • 300 • updated 10 months ago by Kevin Blighe ♦ 37k
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661
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Data Discrepency from TCGA-GDC portal and GDC firehose
firehose tcga gdc written 10 months ago by David_emir • 310 • updated 10 months ago by mbk0asis • 410
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conversion of data.frame object to SummarizedExperiment object
tcgabiolinks R gdc summarizedexperiment written 11 months ago by lawarde.ankita1 • 30 • updated 11 months ago by svlachavas • 560
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help with GDCprepare
tcgabiolinks R gdcprepare gdc written 11 months ago by lawarde.ankita1 • 30
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GDC data for mutation comparison between GBM and LGG using R
tcgabiolinks R gdc mutations tcgaworkflow written 11 months ago by lawarde.ankita1 • 30
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How to get the simple somatic mutation vcf file from GDC data portal?
vcf maf tcgabiolinks gdc mutations written 12 months ago by Vasu • 300
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770
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Access of triple negative breast cancer datasets from GDC
gdc triple negative breast cancer written 14 months ago by fawazfebin • 0
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