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2
votes
1
answer
2.3k
views
1
answer
TCGA/GDC FPKM vs FPKM-UQ
gdc rna-seq written 19 months ago by igor ♦ 6.8k • updated 9 hours ago by gabriel.rosser • 130
3
votes
1
answer
110
views
1
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Firebrowse Data vs GDC Portal Data
firebrowse R tcga gdc cnv written 9 days ago by jmw730 • 0 • updated 9 days ago by Kevin Blighe ♦ 30k
1
vote
1
answer
139
views
1
answer
How to decode patient barcode inTCGA database ?
R tcga patient gdc written 11 weeks ago by Björn • 30 • updated 5 weeks ago by zx8754 ♦ 5.3k
0
votes
1
answer
83
views
1
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GDC data portal - Tumour and Adjacent normal
dna methylation tcga gdc rna-seq written 5 weeks ago by rjactonspsfcf • 50 • updated 5 weeks ago by Kevin Blighe ♦ 30k
2
votes
1
answer
249
views
1
answer
GDC portal data download
tcga gdc download gdcportal written 12 weeks ago by a01039012387 • 10
0
votes
1
answer
140
views
1
answer
GDC portal barcode / metadata
tcga gdc rna-seq written 12 weeks ago by silvia.casola8 • 0 • updated 12 weeks ago by noorpratap.singh • 110
10
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3
answers
1.0k
views
7 follow
3
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Samples with same TCGA barcode in TCGA data
tcga gdc rna-seq written 6 months ago by Bioinfo • 270 • updated 3 months ago by Shixiang • 20
0
votes
0
answers
109
views
0
answers
Clarification on GDC Methylation data
dataset tcga methylation gdc written 3 months ago by 9606 • 310
7
votes
1
answer
895
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6 follow
1
answer
GDC server down???
tcgabiolinks array methylation gdc written 4 months ago by Gabriel Wajnberg • 60 • updated 3 months ago by Jade • 30
0
votes
0
answers
168
views
0
answers
Converting UUID downloaded from GDC to TCGA names
phyton gdc written 4 months ago by emiliano.traini • 0
1
vote
1
answer
229
views
1
answer
Find Information about TCGA samples from GDC data portal
tcga gdc sample information rna-seq written 4 months ago by lawarde.ankita1 • 20 • updated 4 months ago by svlachavas • 500
27
votes
2
answers
7.4k
views
2
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Tutorial: TCGA UUIDS to TCGA barcode (SampleID) in R
R tutorial next-gen gdc tcga written 2.0 years ago by martinguerrerog89 • 260 • updated 5 months ago by saraholiver307 • 0
0
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1
answer
1.0k
views
1
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Retrieving UUIDs from TCGA Barcodes in the GDC File Repository
barcode uuid tcga gdc written 14 months ago by jjdan • 0 • updated 5 months ago by Kevin Blighe ♦ 30k
0
votes
1
answer
201
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1
answer
How to change the format of CNV files (.txt) obtained from GDC to accepted formats of Variant Effect Predictor?
gdc cnv converting file format written 5 months ago by nazaninhoseinkhan • 340 • updated 5 months ago by Kevin Blighe ♦ 30k
6
votes
1
answer
579
views
1
answer
Duplicate samples in TCGA Breast cancer data. Which one to pick?
tcga breast rna-seq gdc written 5 months ago by Bioinfo • 270
1
vote
1
answer
235
views
1
answer
How can I download methylation array raw files containing mutation in gene A from GDC legacy archive ?
mutation tcga methylation gdc legacy written 6 months ago by Goku • 0 • updated 6 months ago by Kevin Blighe ♦ 30k
17
votes
1
answer
1.6k
views
5 follow
1
answer
Sample names for TCGA data from GDC-legacy archive
tcga gdc rna-seq written 6 months ago by Bioinfo • 270 • updated 6 months ago by Kevin Blighe ♦ 30k
0
votes
1
answer
410
views
1
answer
Data Discrepency from TCGA-GDC portal and GDC firehose
firehose tcga gdc written 6 months ago by David_emir • 300 • updated 6 months ago by mbk0asis • 380
1
vote
1
answer
429
views
1
answer
conversion of data.frame object to SummarizedExperiment object
tcgabiolinks R gdc summarizedexperiment written 7 months ago by lawarde.ankita1 • 20 • updated 7 months ago by svlachavas • 500
0
votes
0
answers
325
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0
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help with GDCprepare
tcgabiolinks R gdcprepare gdc written 7 months ago by lawarde.ankita1 • 20
0
votes
0
answers
225
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0
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GDC data for mutation comparison between GBM and LGG using R
tcgabiolinks R gdc mutations tcgaworkflow written 7 months ago by lawarde.ankita1 • 20
4
votes
0
answers
670
views
0
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How to get the simple somatic mutation vcf file from GDC data portal?
vcf maf tcgabiolinks gdc mutations written 8 months ago by Bioinfo • 270
2
votes
3
answers
602
views
3
answers
Access of triple negative breast cancer datasets from GDC
gdc triple negative breast cancer written 10 months ago by fawazfebin • 0
4
votes
2
answers
862
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5 follow
2
answers
GDC API query to map HT-seq FPKM UUID to a Case UUID
R tcga gdc rna-seq written 11 months ago by mk • 20
47
votes
6
answers
15k
views
27 follow
6
answers
Protocol To Downlad TCGA Data From GDC
tcga methylation gdc download written 2.2 years ago by Shicheng Guo • 6.9k • updated 11 months ago by Sean Davis ♦ 25k
0
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0
answers
581
views
0
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GDC TCGA Metadata no project ID available?
gene expression metadata tcga gdc written 11 months ago by cindy.perscheid • 90
0
votes
1
answer
667
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1
answer
GDC - count Matrix data
count gdc rna-seq written 11 months ago by David_emir • 300 • updated 11 months ago by svlachavas • 500
2
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1
answer
1.2k
views
1
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TCGA - COAD read data gene expression analysis
gene expression gdc rna-seq written 11 months ago by David_emir • 300 • updated 11 months ago by svlachavas • 500
0
votes
0
answers
870
views
0
answers
Converting TCGA/GDC IDs
tcga gdc rna-seq written 12 months ago by krc3004 • 0
1
vote
1
answer
923
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1
answer
Citing data from GDC portal
gdc rna-seq tcga written 12 months ago by noorpratap.singh • 110 • updated 12 months ago by roy.granit • 740
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