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37 results • Page
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4
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Herald:
The Biostar Herald for Monday, August 28, 2023
herald
updated 8 months ago by
Jesse
▴ 770 • written 8 months ago by
Biostar
2.8k
4
votes
1
reply
571
views
Herald:
The Biostar Herald for Monday, October 09, 2023
herald
written 7 months ago by
Biostar
2.8k
2
votes
1
reply
461
views
Herald:
The Biostar Herald for Tuesday, December 19, 2023
herald
updated 4 months ago by
cmdcolin
★ 3.8k • written 4 months ago by
Biostar
2.8k
1
vote
1
reply
245
views
Herald:
The Biostar Herald for Tuesday, April 23, 2024
herald
updated 21 days ago by
Pierre Lindenbaum
161k • written 21 days ago by
Biostar
2.8k
2
votes
0
replies
777
views
Herald:
The Biostar Herald for Monday, June 05, 2023
herald
11 months ago by
Biostar
2.8k
4
votes
0
replies
559
views
Herald:
The Biostar Herald for Wednesday, September 20, 2023
herald
7 months ago by
Biostar
2.8k
1
vote
0
replies
245
views
Herald:
The Biostar Herald for Tuesday, February 20, 2024
herald
12 weeks ago by
Biostar
2.8k
1
vote
0
replies
844
views
Herald:
The Biostar Herald for Tuesday, May 23, 2023
herald
11 months ago by
Biostar
2.8k
6
votes
0
replies
219
views
Herald:
The Biostar Herald for Monday, April 15, 2024
herald
29 days ago by
Biostar
2.8k
1
vote
0
replies
298
views
Herald:
The Biostar Herald for Monday, January 15, 2024
herald
4 months ago by
Biostar
2.8k
3
votes
0
replies
514
views
Herald:
The Biostar Herald for Tuesday, September 26, 2023
herald
7 months ago by
Biostar
2.8k
2
votes
0
replies
162
views
Herald:
The Biostar Herald for Monday, May 06, 2024
herald
8 days ago by
Biostar
2.8k
2
votes
0
replies
273
views
Herald:
The Biostar Herald for Monday, February 12, 2024
herald
3 months ago by
Biostar
2.8k
3
votes
0
replies
308
views
Herald:
The Biostar Herald for Monday, January 22, 2024
herald
3 months ago by
Biostar
2.8k
4
votes
0
replies
505
views
Herald:
The Biostar Herald for Wednesday, September 06, 2023
herald
8 months ago by
Biostar
2.8k
2
votes
0
replies
1.1k
views
Herald:
The Biostar Herald for Thursday, June 15, 2023
herald
11 months ago by
Biostar
2.8k
1
vote
0
replies
205
views
Herald:
The Biostar Herald for Wednesday, April 03, 2024
herald
5 weeks ago by
Biostar
2.8k
3
votes
0
replies
459
views
Herald:
The Biostar Herald for Monday, October 16, 2023
herald
7 months ago by
Biostar
2.8k
3
votes
0
replies
385
views
Herald:
The Biostar Herald for Monday, November 27, 2023
herald
5 months ago by
Biostar
2.8k
1
vote
0
replies
294
views
Herald:
The Biostar Herald for Wednesday, January 31, 2024
herald
3 months ago by
Biostar
2.8k
3
votes
0
replies
230
views
Herald:
The Biostar Herald for Monday, March 11, 2024
herald
9 weeks ago by
Biostar
2.8k
4
votes
0
replies
150
views
Herald:
The Biostar Herald for Monday, April 29, 2024
herald
15 days ago by
Biostar
2.8k
3
votes
0
replies
187
views
Herald:
The Biostar Herald for Tuesday, April 09, 2024
herald
5 weeks ago by
Biostar
2.8k
1
vote
0
replies
806
views
Herald:
The Biostar Herald for Wednesday, August 02, 2023
herald
9 months ago by
Biostar
2.8k
2
votes
0
replies
336
views
Herald:
The Biostar Herald for Monday, January 08, 2024
herald
4 months ago by
Biostar
2.8k
4
votes
0
replies
313
views
Herald:
The Biostar Herald for Monday, February 26, 2024
herald
11 weeks ago by
Biostar
2.8k
4
votes
0
replies
375
views
Herald:
The Biostar Herald for Monday, December 11, 2023
herald
5 months ago by
Biostar
2.8k
3
votes
0
replies
408
views
Herald:
The Biostar Herald for Monday, November 13, 2023
herald
6 months ago by
Biostar
2.8k
2
votes
0
replies
116
views
Herald:
The Biostar Herald for Monday, May 13, 2024
herald
1 day ago by
Biostar
2.8k
2
votes
0
replies
456
views
Herald:
The Biostar Herald for Monday, October 30, 2023
herald
6 months ago by
Biostar
2.8k
3
votes
0
replies
226
views
Herald:
The Biostar Herald for Monday, March 25, 2024
herald
7 weeks ago by
Biostar
2.8k
2
votes
0
replies
379
views
Herald:
The Biostar Herald for Monday, December 04, 2023
herald
5 months ago by
Biostar
2.8k
3
votes
0
replies
420
views
Herald:
The Biostar Herald for Monday, November 20, 2023
herald
5 months ago by
Biostar
2.8k
2
votes
0
replies
496
views
Herald:
The Biostar Herald for Monday, October 23, 2023
herald
6 months ago by
Biostar
2.8k
2
votes
0
replies
694
views
Herald:
The Biostar Herald for Wednesday, August 09, 2023
herald
9 months ago by
Biostar
2.8k
1
vote
0
replies
616
views
Herald:
The Biostar Herald for Thursday, August 24, 2023
herald
8 months ago by
Biostar
2.8k
4
votes
0
replies
437
views
Herald:
The Biostar Herald for Monday, November 06, 2023
herald
6 months ago by
Biostar
2.8k
37 results • Page
1 of 1
Recent Votes
Comment: Genome Visualization Tools
Answer: RSeQC : infer_experiment.py Error: Could not retrieve index file
A: Best de novo assembler for insect genome ?
Comment: sci-RNA-seq
The Biostar Herald for Monday, May 13, 2024
Answer: Finding variants within a subset of a BAM file
Answer: Extracting only 4-fold degenerate sites from gene sequences/alignments?
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Recent Awards •
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Popular Question
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Sofia
• 0
Popular Question
to
jen
▴ 10
Popular Question
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nitinra
▴ 50
Scholar
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161k
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43k
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Recent Replies
Comment: Genome Visualization Tools
by
dlera.lozano
• 0
Thank you so much
Answer: Doubt about the process of annotation, detection, identification and classificat
by
Mensur Dlakic
★ 27k
Depends on the context. `TE detection` and `TE identification` could mean the same thing if they refer to presence/absence of TEs. `TE iden…
Comment: featureCounts output summary assigned value higher than uniquely mapped reads fr
by
Ram
43k
Please accept your own answer to mark the post as solved.
Comment: RSeQC : infer_experiment.py Error: Could not retrieve index file
by
Ram
43k
A small educational note: if an answer was helpful, you should upvote it; if the answer resolved your question, you should mark it as accep…
Comment: RSeQC : infer_experiment.py Error: Could not retrieve index file
by
Prawesh
• 0
thanks, it's working now.
Comment: Genome Visualization Tools
by
GenoMax
142k
@cmdcolin has a great list here: https://github.com/cmdcolin/awesome-genome-visualization
Answer: RSeQC : infer_experiment.py Error: Could not retrieve index file
by
Trivas
★ 1.8k
You need to have indexed your bam/sam file using `samtools index`
Answer: Using ggplotly in R
by
jared.andrews07
★ 16k
The simple answer is to plot it natively with plotly rather than use `ggplotly`. See [this stackoverflow answer](https://stackoverflow.com/…
Comment: Why does assigning genes with biomart give me different values than using a tran
by
GenoMax
142k
According to HUGO there is only one [**ZSCAN2 gene**][1] and it points to the first Ensembl gene ID (ENSG00000176371). Ensembl is annotatin…
Answer: RNAseq RNA content
by
noodle
▴ 580
There are many tools for this. I recommend [gatk (picard) CollectRnaSeqMetrics][1] or alternatively [RSeQC][2] and then run [multiqc][3…
Comment: Where to get the following bed file?
by
wyuan37
• 0
Hi, I emailed them and did get the bed file! Thank you so much.
Comment: Where to get the following bed file?
by
wyuan37
• 0
Thanks! Super helpful.
Answer: Post-imputation QC for input into GWAS analyses
by
LauferVA
4.2k
1. Imputation algorithms will output log files indicating, among other things, accuracy of imputation. We can't comment on specifics as we …
Comment: Using Cutadapt to trim adapters from paired-end small RNA sequence data
by
GenoMax
142k
You can simply ignore read 2. It is not adding any information since your small RNA's are going to be small and were completely sequenced b…
Comment: Overlapping Ranges within Granges object
by
ntsopoul
▴ 60
does this work with a single .bed file?
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