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<prev • 90 results • page 1 of 3 • next >
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HMMER installed with conda: no tutorial folder
genome installation alignment hmmer written 6 days ago by Wilber0x • 10 • updated 5 days ago by konkelzach • 10
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0
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35
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0
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Using nhmmer to identify possible primers in sequences
nhmmer primers sequence hmmer written 6 days ago by lf.marques • 0
0
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1
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343
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1
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HMMER: hmmscan ---> hmmsearch
hmm pfam protein hmmer written 4 months ago by Metaxo • 0 • updated 19 days ago by h.mon ♦ 28k
4
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0
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198
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InterProScan and HMMER - different results
interproscan hmmer pfam written 4 months ago by yp19 • 50 • updated 7 weeks ago by h.mon ♦ 28k
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0
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138
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0
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Help with Hmmscan
alignment metagenome hmmscan blast hmmer written 10 weeks ago by Longshotx • 20
3
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1
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162
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1
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Performing Hmmer search against pfam versus UniRef100
pfam forum alignment hmmer written 12 weeks ago by baverso • 0 • updated 12 weeks ago by Mensur Dlakic • 2.1k
7
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2
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2.1k
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6 follow
2
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Filtering HmmScan Domain Results
protein domain threshold hmmscan filtering hmmer written 16 months ago by hewaholax • 0 • updated 7 months ago by Biostar ♦♦ 20
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1
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322
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1
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Redirecting pHMMER output to /dev/null
gene annotation hmmer protein genome written 7 months ago by msobol • 20
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0
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202
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0
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How do I train my sequence to have higher score in using HMMER package
hidden markov model sequence analysis hmmer written 7 months ago by howenwy2 • 0
0
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0
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297
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0
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Top hit from phmmer
gene annotation phmmer hmmer genome written 8 months ago by msobol • 20
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0
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281
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0
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Some question in Hmmer package
sequence alignment hmmer written 8 months ago by howenwy2 • 0
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1
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1.0k
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1
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hmmsearch to show all sequences
multifasta hmmsearch hmmer written 3.4 years ago by srx3001 • 10 • updated 8 months ago by jscience • 0
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1
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508
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1
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Make a multiple sequence alignment with a HMMER hmmsearch output?
hmmer written 9 months ago by westin.kosater • 10 • updated 9 months ago by h.mon ♦ 28k
1
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0
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302
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0
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Trying to interpret the content of a hmm file from HMMER3
hmmer written 9 months ago by westin.kosater • 10
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1
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337
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1
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Profile HMM hidden state interpretation
profile hmm hmm hmmer written 10 months ago by jaip217 • 20 • updated 10 months ago by Jean-Karim Heriche ♦ 21k
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3
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4.1k
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6 follow
3
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Visualizing Hmm Files Of Hmmer3
hmm visualization hmmer written 8.5 years ago by Cjt • 370 • updated 10 months ago by leon.kuchenbecker • 0
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381
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0
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envelope and alignment coordinates in hmmsearch result
sequence bioinformatics alignment hmmsearch hmmer written 10 months ago by sanjeet00001992 • 0
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2.0k
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0
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Tutorial: Fixing "Error: Unrecognized format, trying to open hmm file Pfam-A.hmm for reading."
genome tutorial hmmer pfam written 2.1 years ago by rpalmavejares • 20 • updated 12 months ago by h.mon ♦ 28k
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0
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429
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0
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Differences in hit number between Pfam, HMMER and searching UniProt with domain name
protein database alignment uniprot pfam hmmer written 12 months ago by deleted user • 0
2
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0
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386
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0
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./configure wouldn't compile HMMER v3.2.1
installation cygwin hmmer written 12 months ago by JernejT • 0
8
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2
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5.0k
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2
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Hmmbuild: How To Choose The Best Alignment For Hmm Model
alignment hmm hmmer written 8.7 years ago by Leszek ♦ 4.0k • updated 13 months ago by michau • 20
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1
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1.4k
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1
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Bio.SearchIO.HmmerIO only showing the best score domain
python hmmer written 3.7 years ago by Selenocysteine • 550 • updated 14 months ago by Biostar ♦♦ 20
0
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0
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595
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0
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Generate HMM profile without an MSA (hmmer)
hmm msa hmmer written 16 months ago by elenatea.russo • 20
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0
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549
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0
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Best way to identify proteins within a family?
domain orthologs oma homology hmmer written 18 months ago by Solowars • 50
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1
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1.9k
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1
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Comparing two HMM profiles
alignment sequence hmm hmmer written 3.2 years ago by kk1990 • 0 • updated 18 months ago by Biostar ♦♦ 20
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1.1k
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Align protein sequence to Pfam file using HMMER3.0 (hmmalign)
hmmer protein pfam written 21 months ago by Xiaokang ZH • 40 • updated 19 months ago by Biostar ♦♦ 20
0
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0
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790
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0
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hmmsearch didn't work with nucleotide genome
genome nucleotide genome hmmer hmmsearch tool written 20 months ago by lbroetto • 0 • updated 20 months ago by Alex Reynolds ♦ 29k
4
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2
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673
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2
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Retrieve sequences that generated a HMM profile
hmmer written 21 months ago by camachofrancine • 130 • updated 21 months ago by Jean-Karim Heriche ♦ 21k
0
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1
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534
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1
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Exact match with query architecture option for local version of HMMER
hmmsearch hmmer written 21 months ago by Sej Modha ♦ 4.5k
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1.5k
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0
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Running HMMER via Python
profile hmm python hmmer hmm cli written 22 months ago by Ghoti • 50
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