Showing: hmmerreset
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Parse hmm(er) profiles in R
hmmer profile parse hmm R written 5 weeks ago by hivemind10
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Installation issues with hmmer2
hmmer2 hmmsearch prokka hmmer written 2.4 years ago by JV270 • updated 5 months ago by Ram11k
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Find orthologs using EggNOG and local HMMER search for multiple transcripts
orthologs eggnog rna-seq gene hmmer written 5 months ago by Farbod2.9k • updated 5 months ago by jhc2.5k
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hmmpress error with a hmm database
hmmpress hmm hmmer written 2.5 years ago by shyamgc010 • updated 5 months ago by satanicodr100
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nucleotide Hidden Markov Model search
nhmmer hmmer written 6 months ago by peri.tobias0 • updated 5 months ago by Biostar ♦♦ 10
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Comparing two HMM profiles
alignment sequence hmm hmmer written 6 months ago by kk19900 • updated 6 months ago by Jean-Karim Heriche8.7k
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First steps Hmmer
genome alignment sequence hmmer written 8 months ago by mayegidio0 • updated 7 months ago by Biostar ♦♦ 10
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Combining HMMs and fasta for HMMER searches
fasta hmm hmmer written 7 months ago by Anand Rao50 • updated 7 months ago by Jean-Karim Heriche8.7k
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Bio::Searchio For Hmmer3 Output (Best Domain E-Value And I-Evalue)
bioperl hmmer written 3.1 years ago by greentailedmouse20 • updated 8 months ago by Biostar ♦♦ 10
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Identifying Multiple Domains Using Hmmer 3.0
protein hmmer written 5.2 years ago by Hari220 • updated 11 months ago by mlwbglorious0
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HMMER search on conserved domain database
forum domains cdd hmmer written 13 months ago by salvocamiolo10 • updated 13 months ago by Jean-Karim Heriche8.7k
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map proteins to EC numbers (KEGG) in non-model fungal organisms
kegg hmmer written 15 months ago by bioPiraten10 • updated 15 months ago by Manuel Landesfeind940
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Parsing HMMER output with BioPerl
bioperl hmmer written 2.5 years ago by rwn390 • updated 20 months ago by Biostar ♦♦ 10
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MSA following hmmalign/hmmsearch?
hmmer written 21 months ago by db5340
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hmmindex: FATAL: failed to open HMM file Pfam-A.hmm for reading.
software error hmmer pfam sequencing written 22 months ago by dago2.1k • updated 22 months ago by venu3.3k
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Don't get hits on HMMER
hmmer written 23 months ago by Bioguy0 • updated 23 months ago by cryptogenomicon20
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hmmer core dumps, does not create proper MSA Stockholm format files
phmmer hmmsearch hmmer written 23 months ago by kdiaz170 • updated 23 months ago by seanrobertseddy50
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biopython SearchIO with hmmearch 2 error
python hmmer hmmsearch biopython written 2.1 years ago by MAK10 • updated 2.1 years ago by Biostar ♦♦ 10
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"Protein search using Blastp" vs "protein search using hmm profile"
annotation hmmer proteins blast pfam written 2.1 years ago by dago2.1k • updated 2.1 years ago by Siva1.5k
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