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<prev • 104 results • page 1 of 4 • next >
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How do I extract sequences to create a fasta file from an nhmmer .out file?
fasta nhmmer alignment hmm hmmer written 8 days ago by carlee.bettler • 10 • updated 8 days ago by Fatima • 760
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1
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77
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1
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Error installing hmmer-3.1b2-cygwin64
cygwin64 hmmer written 5 weeks ago by efraav • 0 • updated 5 weeks ago by Mensur Dlakic • 6.9k
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0
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120
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0
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ITSx ITS Extraction Software Error
its1 itsx hmmer written 6 weeks ago by Oliver K. • 0
2
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1
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250
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1
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How to keep the top hits only in the output file of hmmscan?
top hits hmmscan output hmmer written 12 weeks ago by Audrey • 20
5
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1
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206
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1
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How to download a Pfam database for hmmer searches?
database hmmer pfam written 12 weeks ago by Audrey • 20
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1
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171
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How do I get all sequences for one specific domain from Hmmer vs Pfam output that contains the results of many domains ?
domain hmmer pfam written 4 months ago by emilyc • 30 • updated 4 months ago by Mensur Dlakic • 6.9k
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146
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What should I use as a reference in hivmmer
hiv genotyping hmm hivmmer hmmer written 6 months ago by nadinezakkak • 0 • updated 5 months ago by Biostar ♦♦ 20
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310
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1
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hmmsearch vs hmmscan - e-value, speed, & output differences?
protein hmmer e-value hmmscan hmmsearch written 5 months ago by jabaron.phd • 0
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2
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241
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2
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Use HHblits to find homologs in multiple species ?
proteome hhblits hhsuite alignment hmmer written 6 months ago by khhgng • 70 • updated 6 months ago by Mensur Dlakic • 6.9k
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146
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hmmer from multiple alignment with t-coffee (proteins sequences)
alignment phmm sequence hmmer written 6 months ago by eridanus • 10
2
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1
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426
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1
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Why is hmmsearch only using the 1st HMM in a concatenated HMM database?
protein domain hmmer hmm script bash written 6 months ago by O.rka • 220 • updated 6 months ago by Mensur Dlakic • 6.9k
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207
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Orthofiller failing `Error: hmmerfm is not a recognized sequence database file format`
nhmmer orthofiller hmmerfm error hmmer written 8 months ago by xonq • 20
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0
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662
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Top hit from phmmer
gene annotation phmmer hmmer genome written 20 months ago by mss • 30 • updated 9 months ago by tayab soomro • 0
3
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1
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320
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1
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pfam tigrfam mixed database
hmmpress pfam tigrfam hmmer written 11 months ago by Moses • 120 • updated 11 months ago by Mensur Dlakic • 6.9k
6
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1
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263
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1
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How a protein sequence is classified in a HMM
sequencing alignment pfam hmmscan hmmer written 11 months ago by cirooliveira3 • 10 • updated 11 months ago by Mensur Dlakic • 6.9k
2
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2
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579
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2
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HMMER installed with conda: no tutorial folder
genome installation alignment hmmer written 11 months ago by Wilber0x • 10 • updated 11 months ago by xonq • 20
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0
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174
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Using nhmmer to identify possible primers in sequences
nhmmer primers sequence hmmer written 11 months ago by lf.marques • 0
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1
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1
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HMMER: hmmscan ---> hmmsearch
hmm pfam protein hmmer written 15 months ago by Metaxo • 0 • updated 12 months ago by h.mon ♦ 31k
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5 follow
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InterProScan and HMMER - different results
interproscan hmmer pfam written 16 months ago by yp19 • 60 • updated 13 months ago by h.mon ♦ 31k
0
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0
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379
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Help with Hmmscan
alignment metagenome hmmscan blast hmmer written 14 months ago by Longshotx • 50
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1
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479
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1
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Performing Hmmer search against pfam versus UniRef100
pfam forum alignment hmmer written 14 months ago by baverso • 0 • updated 14 months ago by Mensur Dlakic • 6.9k
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2
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8 follow
2
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Filtering HmmScan Domain Results
protein domain threshold hmmscan filtering hmmer written 2.3 years ago by hewaholax • 10 • updated 19 months ago by Biostar ♦♦ 20
10
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1
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570
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1
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Redirecting pHMMER output to /dev/null
gene annotation hmmer protein genome written 19 months ago by mss • 30
3
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351
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How do I train my sequence to have higher score in using HMMER package
hidden markov model sequence analysis hmmer written 19 months ago by howenwy2 • 0
5
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491
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Some question in Hmmer package
sequence alignment hmmer written 20 months ago by howenwy2 • 0
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1
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hmmsearch to show all sequences
multifasta hmmsearch hmmer written 4.3 years ago by srx3001 • 10 • updated 20 months ago by jscience • 0
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1
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1.2k
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1
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Make a multiple sequence alignment with a HMMER hmmsearch output?
hmmer written 20 months ago by westin.kosater • 40 • updated 20 months ago by h.mon ♦ 31k
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Trying to interpret the content of a hmm file from HMMER3
hmmer written 21 months ago by westin.kosater • 40
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603
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1
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Profile HMM hidden state interpretation
profile hmm hmm hmmer written 22 months ago by jaip217 • 20 • updated 22 months ago by Jean-Karim Heriche ♦ 23k
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3
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6 follow
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Visualizing Hmm Files Of Hmmer3
hmm visualization hmmer written 9.5 years ago by Cjt • 370 • updated 22 months ago by leon.kuchenbecker • 0
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