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<prev • 74 results • page 1 of 3 • next >
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Generate HMM profile without an MSA (hmmer)
hmm msa hmmer written 26 days ago by elenatea.russo • 0
4
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2
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148
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2
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Filtering HmmScan Domain Results
protein domain threshold hmmscan filtering hmmer written 28 days ago by hewaholax • 0 • updated 27 days ago by a.zielezinski ♦ 8.4k
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192
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Best way to identify proteins within a family?
domain orthologs oma homology hmmer written 12 weeks ago by Solowars • 30
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1
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1.1k
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1
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Comparing two HMM profiles
alignment sequence hmm hmmer written 23 months ago by kk1990 • 0 • updated 3 months ago by Biostar ♦♦ 20
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433
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Align protein sequence to Pfam file using HMMER3.0 (hmmalign)
hmmer protein pfam written 6 months ago by Xiaokang ZH • 40 • updated 4 months ago by Biostar ♦♦ 20
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242
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hmmsearch didn't work with nucleotide genome
genome nucleotide genome hmmer hmmsearch tool written 5 months ago by lbroetto • 0 • updated 5 months ago by Alex Reynolds ♦ 25k
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2
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263
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Retrieve sequences that generated a HMM profile
hmmer written 6 months ago by camachofrancine • 80 • updated 6 months ago by Jean-Karim Heriche ♦ 16k
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224
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1
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Exact match with query architecture option for local version of HMMER
hmmsearch hmmer written 6 months ago by Sej Modha ♦ 3.4k
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488
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Running HMMER via Python
profile hmm python hmmer hmm cli written 6 months ago by Ghoti • 40
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308
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HMMER-make check fail
hmmer installation win10 cygwin hmmer written 6 months ago by weiyuanchen2015 • 0
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3
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675
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Problem in execution of the commands in HMMER
hmmbuild hmmscan hmmer written 8 months ago by ambika_dudhate • 0
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292
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Pfam/Hmmer redundant annotations
pfam annotations hmmer written 8 months ago by Selenocysteine • 500
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645
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Error: Unrecognized format, trying to open hmm file Pfam-A.hmm for reading. FIX
genome hmmer pfam written 10 months ago by rpalmavejares • 0
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1
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853
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1
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HMMER: Failed to open target sequence database for reading
database phmmer hmmer written 11 months ago by Cayro • 0 • updated 11 months ago by cryptogenomicon • 80
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605
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Hmmer Alignment input parse error
hmmer alignment error parse written 14 months ago by hivemind • 10
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1
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898
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1
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How to generate a multiple HMM file with HMMER?
hmmer stockholm msa written 14 months ago by yarmda • 0 • updated 14 months ago by Sej Modha ♦ 3.4k
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397
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Which profile search programs are best? Comparison studies?
hmmer written 15 months ago by kgbenn123 • 10
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1
answer
656
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1
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Parse hmm(er) profiles in R
hmmer profile parse hmm R written 18 months ago by hivemind • 10
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474
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How can I get Tabular output using HMMer
hmmer written 19 months ago by 2351688559 • 10
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630
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Tool: Convert Panther HMMs from binary to ascii format to use hmmscan
hmms tool databases hmmer written 20 months ago by cavelandiah • 0
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HMMER error: Unrecognized format with Pfam-A.hmm
pfam-a.hmm error hmmer written 21 months ago by jmah • 0
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706
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Converting Hmmer output to XML format
easel biopython hmmer written 21 months ago by adi4bc • 10
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760
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How to parse HMMSCAN output to enable comparison of domain architecture for several proteins
hmmer homology domain architecture pfam written 21 months ago by peter pfand • 70
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1.9k
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Installation issues with hmmer2
hmmer2 hmmsearch prokka hmmer written 3.8 years ago by JV • 340 • updated 22 months ago by Ram ♦ 17k
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1
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1.2k
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1
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Find orthologs using EggNOG and local HMMER search for multiple transcripts
orthologs eggnog rna-seq gene hmmer written 22 months ago by Farbod • 3.1k • updated 22 months ago by jhc • 2.7k
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hmmpress error with a hmm database
hmmpress hmm hmmer written 3.9 years ago by shyamgc01 • 0 • updated 22 months ago by satanicodr • 110
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664
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nucleotide Hidden Markov Model search
nhmmer hmmer written 24 months ago by peri.tobias • 0 • updated 22 months ago by Biostar ♦♦ 20
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768
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First steps Hmmer
genome alignment sequence hmmer written 2.1 years ago by mayegidio • 0 • updated 24 months ago by Biostar ♦♦ 20
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1
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1.0k
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Combining HMMs and fasta for HMMER searches
fasta hmm hmmer written 2.0 years ago by Anand Rao • 160 • updated 2.0 years ago by Jean-Karim Heriche ♦ 16k
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Bio::Searchio For Hmmer3 Output (Best Domain E-Value And I-Evalue)
bioperl hmmer written 4.5 years ago by greentailedmouse • 40 • updated 2.1 years ago by Biostar ♦♦ 20
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