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<prev • 85 results • page 1 of 3 • next >
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HMMER: hmmscan ---> hmmsearch
hmm pfam protein hmmer written 12 days ago by Metaxo • 0
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2
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1.4k
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6 follow
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Filtering HmmScan Domain Results
protein domain threshold hmmscan filtering hmmer written 12 months ago by hewaholax • 0 • updated 3 months ago by Biostar ♦♦ 20
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239
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1
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Redirecting pHMMER output to /dev/null
gene annotation hmmer protein genome written 3 months ago by msobol • 20
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145
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How do I train my sequence to have higher score in using HMMER package
hidden markov model sequence analysis hmmer written 3 months ago by howenwy2 • 0
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194
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Top hit from phmmer
gene annotation phmmer hmmer genome written 4 months ago by msobol • 20
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228
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Some question in Hmmer package
sequence alignment hmmer written 4 months ago by howenwy2 • 0
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hmmsearch to show all sequences
multifasta hmmsearch hmmer written 3.1 years ago by srx3001 • 10 • updated 4 months ago by jscience • 0
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300
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1
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Make a multiple sequence alignment with a HMMER hmmsearch output?
hmmer written 5 months ago by westin.kosater • 10 • updated 5 months ago by h.mon ♦ 26k
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Trying to interpret the content of a hmm file from HMMER3
hmmer written 5 months ago by westin.kosater • 10
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252
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Profile HMM hidden state interpretation
profile hmm hmm hmmer written 6 months ago by jaip217 • 20 • updated 6 months ago by Jean-Karim Heriche ♦ 20k
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6 follow
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Visualizing Hmm Files Of Hmmer3
hmm visualization hmmer written 8.2 years ago by Cjt • 370 • updated 6 months ago by leon.kuchenbecker • 0
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256
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envelope and alignment coordinates in hmmsearch result
sequence bioinformatics alignment hmmsearch hmmer written 6 months ago by sanjeet00001992 • 0
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Tutorial: Fixing "Error: Unrecognized format, trying to open hmm file Pfam-A.hmm for reading."
genome tutorial hmmer pfam written 21 months ago by rpalmavejares • 20 • updated 8 months ago by h.mon ♦ 26k
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Differences in hit number between Pfam, HMMER and searching UniProt with domain name
protein database alignment uniprot pfam hmmer written 8 months ago by skvaller • 0
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./configure wouldn't compile HMMER v3.2.1
installation cygwin hmmer written 8 months ago by JernejT • 0
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Hmmbuild: How To Choose The Best Alignment For Hmm Model
alignment hmm hmmer written 8.4 years ago by Leszek ♦ 4.0k • updated 9 months ago by michau • 20
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1.2k
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1
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Bio.SearchIO.HmmerIO only showing the best score domain
python hmmer written 3.4 years ago by Selenocysteine • 550 • updated 10 months ago by Biostar ♦♦ 20
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Generate HMM profile without an MSA (hmmer)
hmm msa hmmer written 12 months ago by elenatea.russo • 20
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467
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Best way to identify proteins within a family?
domain orthologs oma homology hmmer written 14 months ago by Solowars • 50
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1.7k
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Comparing two HMM profiles
alignment sequence hmm hmmer written 2.9 years ago by kk1990 • 0 • updated 14 months ago by Biostar ♦♦ 20
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Align protein sequence to Pfam file using HMMER3.0 (hmmalign)
hmmer protein pfam written 17 months ago by Xiaokang ZH • 40 • updated 15 months ago by Biostar ♦♦ 20
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628
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hmmsearch didn't work with nucleotide genome
genome nucleotide genome hmmer hmmsearch tool written 16 months ago by lbroetto • 0 • updated 16 months ago by Alex Reynolds ♦ 28k
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2
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577
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Retrieve sequences that generated a HMM profile
hmmer written 17 months ago by camachofrancine • 100 • updated 17 months ago by Jean-Karim Heriche ♦ 20k
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456
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1
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Exact match with query architecture option for local version of HMMER
hmmsearch hmmer written 17 months ago by Sej Modha ♦ 4.2k
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Running HMMER via Python
profile hmm python hmmer hmm cli written 18 months ago by Ghoti • 50
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HMMER-make check fail
hmmer installation win10 cygwin hmmer written 18 months ago by weiyuanchen2015 • 0
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Problem in execution of the commands in HMMER
hmmbuild hmmscan hmmer written 19 months ago by ambika_dudhate • 0
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551
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Pfam/Hmmer redundant annotations
pfam annotations hmmer written 19 months ago by Selenocysteine • 550
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HMMER: Failed to open target sequence database for reading
database phmmer hmmer written 22 months ago by Cayro • 0 • updated 22 months ago by cryptogenomicon • 150
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Hmmer Alignment input parse error
hmmer alignment error parse written 2.1 years ago by hivemind • 10
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