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<prev • 93 results • page 1 of 4 • next >
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Orthofiller failing `Error: hmmerfm is not a recognized sequence database file format`
nhmmer orthofiller hmmerfm error hmmer written 8 days ago by konkelzach • 10
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0
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395
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Top hit from phmmer
gene annotation phmmer hmmer genome written 11 months ago by msobol • 20 • updated 6 weeks ago by tayab soomro • 0
3
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1
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104
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1
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pfam tigrfam mixed database
hmmpress pfam tigrfam hmmer written 12 weeks ago by Moses • 110 • updated 12 weeks ago by Mensur Dlakic • 3.3k
6
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1
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131
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1
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How a protein sequence is classified in a HMM
sequencing alignment pfam hmmscan hmmer written 12 weeks ago by cirooliveira3 • 10 • updated 12 weeks ago by Mensur Dlakic • 3.3k
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2
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169
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HMMER installed with conda: no tutorial folder
genome installation alignment hmmer written 3 months ago by Wilber0x • 10 • updated 3 months ago by konkelzach • 10
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Using nhmmer to identify possible primers in sequences
nhmmer primers sequence hmmer written 3 months ago by lf.marques • 0
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1
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626
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1
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HMMER: hmmscan ---> hmmsearch
hmm pfam protein hmmer written 7 months ago by Metaxo • 0 • updated 3 months ago by h.mon ♦ 29k
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250
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InterProScan and HMMER - different results
interproscan hmmer pfam written 7 months ago by yp19 • 50 • updated 4 months ago by h.mon ♦ 29k
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220
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Help with Hmmscan
alignment metagenome hmmscan blast hmmer written 5 months ago by Longshotx • 20
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1
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229
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1
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Performing Hmmer search against pfam versus UniRef100
pfam forum alignment hmmer written 6 months ago by baverso • 0 • updated 6 months ago by Mensur Dlakic • 3.3k
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2
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2.6k
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6 follow
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Filtering HmmScan Domain Results
protein domain threshold hmmscan filtering hmmer written 19 months ago by hewaholax • 0 • updated 10 months ago by Biostar ♦♦ 20
10
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1
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392
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1
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Redirecting pHMMER output to /dev/null
gene annotation hmmer protein genome written 10 months ago by msobol • 20
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255
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How do I train my sequence to have higher score in using HMMER package
hidden markov model sequence analysis hmmer written 10 months ago by howenwy2 • 0
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364
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Some question in Hmmer package
sequence alignment hmmer written 11 months ago by howenwy2 • 0
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1.2k
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1
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hmmsearch to show all sequences
multifasta hmmsearch hmmer written 3.6 years ago by srx3001 • 10 • updated 11 months ago by jscience • 0
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1
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661
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1
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Make a multiple sequence alignment with a HMMER hmmsearch output?
hmmer written 12 months ago by westin.kosater • 20 • updated 12 months ago by h.mon ♦ 29k
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378
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Trying to interpret the content of a hmm file from HMMER3
hmmer written 12 months ago by westin.kosater • 20
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426
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1
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Profile HMM hidden state interpretation
profile hmm hmm hmmer written 13 months ago by jaip217 • 20 • updated 13 months ago by Jean-Karim Heriche ♦ 21k
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3
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4.2k
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6 follow
3
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Visualizing Hmm Files Of Hmmer3
hmm visualization hmmer written 8.8 years ago by Cjt • 370 • updated 13 months ago by leon.kuchenbecker • 0
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479
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envelope and alignment coordinates in hmmsearch result
sequence bioinformatics alignment hmmsearch hmmer written 14 months ago by sanjeet00001992 • 0
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Tutorial: Fixing "Error: Unrecognized format, trying to open hmm file Pfam-A.hmm for reading."
genome tutorial hmmer pfam written 2.3 years ago by rpalmavejares • 20 • updated 15 months ago by h.mon ♦ 29k
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533
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Differences in hit number between Pfam, HMMER and searching UniProt with domain name
protein database alignment uniprot pfam hmmer written 15 months ago by deleted user • 0
2
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454
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./configure wouldn't compile HMMER v3.2.1
installation cygwin hmmer written 15 months ago by JernejT • 0
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2
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5.1k
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2
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Hmmbuild: How To Choose The Best Alignment For Hmm Model
alignment hmm hmmer written 9.0 years ago by Leszek ♦ 4.0k • updated 17 months ago by michau • 30
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1
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1
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Bio.SearchIO.HmmerIO only showing the best score domain
python hmmer written 3.9 years ago by Selenocysteine • 580 • updated 17 months ago by Biostar ♦♦ 20
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699
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Generate HMM profile without an MSA (hmmer)
hmm msa hmmer written 19 months ago by elenatea.russo • 20
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603
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Best way to identify proteins within a family?
domain orthologs oma homology hmmer written 21 months ago by Solowars • 50
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1
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2.0k
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1
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Comparing two HMM profiles
alignment sequence hmm hmmer written 3.4 years ago by kk1990 • 0 • updated 21 months ago by Biostar ♦♦ 20
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Align protein sequence to Pfam file using HMMER3.0 (hmmalign)
hmmer protein pfam written 2.1 years ago by Xiaokang ZH • 40 • updated 22 months ago by Biostar ♦♦ 20
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893
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hmmsearch didn't work with nucleotide genome
genome nucleotide genome hmmer hmmsearch tool written 23 months ago by lbroetto • 0 • updated 23 months ago by Alex Reynolds ♦ 29k
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