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<prev • 71 results • page 1 of 3 • next >
1
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906
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Comparing two HMM profiles
alignment sequence hmm hmmer written 20 months ago by kk1990 • 0 • updated 3 days ago by Biostar ♦♦ 20
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287
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Align protein sequence to Pfam file using HMMER3.0 (hmmalign)
hmmer protein pfam written 3 months ago by Xiaokang ZH • 30 • updated 6 weeks ago by Biostar ♦♦ 20
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0
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157
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0
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hmmsearch didn't work with nucleotide genome
genome nucleotide genome hmmer hmmsearch tool written 10 weeks ago by lbroetto • 0 • updated 10 weeks ago by Alex Reynolds ♦ 23k
4
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2
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185
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2
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Retrieve sequences that generated a HMM profile
hmmer written 3 months ago by camachofrancine • 70 • updated 3 months ago by Jean-Karim Heriche ♦ 15k
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1
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160
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1
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Exact match with query architecture option for local version of HMMER
hmmsearch hmmer written 3 months ago by Sej Modha • 2.8k
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303
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Running HMMER via Python
profile hmm python hmmer hmm cli written 3 months ago by Ghoti • 40
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0
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222
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HMMER-make check fail
hmmer installation win10 cygwin hmmer written 3 months ago by weiyuanchen2015 • 0
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3
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469
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3
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Problem in execution of the commands in HMMER
hmmbuild hmmscan hmmer written 5 months ago by ambika_dudhate • 0
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244
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Pfam/Hmmer redundant annotations
pfam annotations hmmer written 5 months ago by Selenocysteine • 460
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441
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Error: Unrecognized format, trying to open hmm file Pfam-A.hmm for reading. FIX
genome hmmer pfam written 7 months ago by rpalmavejares • 0
2
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1
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612
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1
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HMMER: Failed to open target sequence database for reading
database phmmer hmmer written 8 months ago by Cayro • 0 • updated 8 months ago by cryptogenomicon • 80
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0
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463
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0
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Hmmer Alignment input parse error
hmmer alignment error parse written 11 months ago by hivemind • 10
0
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1
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703
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1
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How to generate a multiple HMM file with HMMER?
hmmer stockholm msa written 11 months ago by yarmda • 0 • updated 11 months ago by Sej Modha • 2.8k
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339
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0
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Which profile search programs are best? Comparison studies?
hmmer written 12 months ago by kgbenn123 • 10
4
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1
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543
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1
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Parse hmm(er) profiles in R
hmmer profile parse hmm R written 15 months ago by hivemind • 10
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395
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How can I get Tabular output using HMMer
hmmer written 16 months ago by 2351688559 • 10
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552
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Tool: Convert Panther HMMs from binary to ascii format to use hmmscan
hmms tool databases hmmer written 17 months ago by cavelandiah • 0
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1
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1
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HMMER error: Unrecognized format with Pfam-A.hmm
pfam-a.hmm error hmmer written 18 months ago by jmah • 0
2
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0
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604
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0
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Converting Hmmer output to XML format
easel biopython hmmer written 18 months ago by adi4bc • 10
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621
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How to parse HMMSCAN output to enable comparison of domain architecture for several proteins
hmmer homology domain architecture pfam written 18 months ago by peter pfand • 70
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2
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1.8k
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2
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Installation issues with hmmer2
hmmer2 hmmsearch prokka hmmer written 3.6 years ago by JV • 330 • updated 19 months ago by Ram ♦ 15k
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1
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1.1k
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1
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Find orthologs using EggNOG and local HMMER search for multiple transcripts
orthologs eggnog rna-seq gene hmmer written 19 months ago by Farbod • 3.1k • updated 19 months ago by jhc • 2.7k
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2
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2
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hmmpress error with a hmm database
hmmpress hmm hmmer written 3.6 years ago by shyamgc01 • 0 • updated 19 months ago by satanicodr • 110
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579
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nucleotide Hidden Markov Model search
nhmmer hmmer written 20 months ago by peri.tobias • 0 • updated 19 months ago by Biostar ♦♦ 20
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0
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657
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0
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First steps Hmmer
genome alignment sequence hmmer written 22 months ago by mayegidio • 0 • updated 21 months ago by Biostar ♦♦ 20
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1
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845
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1
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Combining HMMs and fasta for HMMER searches
fasta hmm hmmer written 21 months ago by Anand Rao • 110 • updated 21 months ago by Jean-Karim Heriche ♦ 15k
1
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1
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1.7k
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1
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Bio::Searchio For Hmmer3 Output (Best Domain E-Value And I-Evalue)
bioperl hmmer written 4.2 years ago by greentailedmouse • 40 • updated 22 months ago by Biostar ♦♦ 20
0
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0
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547
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hmmsearch to show all sequences
multifasta hmmsearch hmmer written 23 months ago by srx3001 • 0
2
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1
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879
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1
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Does nhmmer look at reverse complements?
ngs alignment sam hmmer written 2.1 years ago by Steven Lakin • 1.3k
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1.6k
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2
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Help using BUSCO to assess quality of transcriptome
trinity hmmer busco rna-seq python written 2.1 years ago by RNAfan • 10
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