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<prev • 61 results • page 1 of 3 • next >
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Hmmer Alignment input parse error
hmmer alignment error parse written 1 day ago by hivemind • 10
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1
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110
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How to generate a multiple HMM file with HMMER?
hmmer stockholm msa written 22 days ago by yarmda • 0 • updated 22 days ago by Sej Modha • 1.3k
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Which profile search programs are best? Comparison studies?
hmmer written 7 weeks ago by kgbenn123 • 0
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213
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Parse hmm(er) profiles in R
hmmer profile parse hmm R written 4 months ago by hivemind • 10
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203
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How can I get Tabular output using HMMer
hmmer written 5 months ago by 2351688559 • 10
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Tool: Convert Panther HMMs from binary to ascii format to use hmmscan
hmms tool databases hmmer written 6 months ago by cavelandiah • 0
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HMMER error: Unrecognized format with Pfam-A.hmm
pfam-a.hmm error hmmer written 7 months ago by jmah • 0
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Converting Hmmer output to XML format
easel biopython hmmer written 7 months ago by adi4bc • 10
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How to parse HMMSCAN output to enable comparison of domain architecture for several proteins
hmmer homology domain architecture pfam written 7 months ago by peter pfand • 60
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Installation issues with hmmer2
hmmer2 hmmsearch prokka hmmer written 2.7 years ago by JV • 320 • updated 8 months ago by Ram ♦ 11k
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Find orthologs using EggNOG and local HMMER search for multiple transcripts
orthologs eggnog rna-seq gene hmmer written 8 months ago by Farbod • 2.9k • updated 8 months ago by jhc • 2.5k
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hmmpress error with a hmm database
hmmpress hmm hmmer written 2.7 years ago by shyamgc01 • 0 • updated 8 months ago by satanicodr • 100
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335
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nucleotide Hidden Markov Model search
nhmmer hmmer written 9 months ago by peri.tobias • 0 • updated 8 months ago by Biostar ♦♦ 20
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Comparing two HMM profiles
alignment sequence hmm hmmer written 9 months ago by kk1990 • 0 • updated 9 months ago by Jean-Karim Heriche ♦ 11k
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First steps Hmmer
genome alignment sequence hmmer written 11 months ago by mayegidio • 0 • updated 10 months ago by Biostar ♦♦ 20
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Combining HMMs and fasta for HMMER searches
fasta hmm hmmer written 10 months ago by Anand Rao • 50 • updated 10 months ago by Jean-Karim Heriche ♦ 11k
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Bio::Searchio For Hmmer3 Output (Best Domain E-Value And I-Evalue)
bioperl hmmer written 3.3 years ago by greentailedmouse • 40 • updated 11 months ago by Biostar ♦♦ 20
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hmmsearch to show all sequences
multifasta hmmsearch hmmer written 12 months ago by srx3001 • 0
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Does nhmmer look at reverse complements?
ngs alignment sam hmmer written 13 months ago by Steven Lakin • 1.3k
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Help using BUSCO to assess quality of transcriptome
trinity hmmer busco rna-seq python written 14 months ago by RNAfan • 10
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Identifying Multiple Domains Using Hmmer 3.0
protein hmmer written 5.4 years ago by Hari • 220 • updated 14 months ago by mlwbglorious • 0
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Bio.SearchIO.HmmerIO only showing the best score domain
python hmmer written 15 months ago by Selenocysteine • 220
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hmmpgmd interface to extract domain matches
hmmer written 16 months ago by Sergej Andrejev • 60
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HMMER search on conserved domain database
forum domains cdd hmmer written 16 months ago by salvocamiolo • 10 • updated 16 months ago by Jean-Karim Heriche ♦ 11k
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map proteins to EC numbers (KEGG) in non-model fungal organisms
kegg hmmer written 18 months ago by bioPiraten • 10 • updated 18 months ago by Manuel Landesfeind • 1.1k
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Parsing HMMER output with BioPerl
bioperl hmmer written 2.8 years ago by rwn • 400 • updated 23 months ago by Biostar ♦♦ 20
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MSA following hmmalign/hmmsearch?
hmmer written 2.0 years ago by db534 • 0
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hmmindex: FATAL: failed to open HMM file Pfam-A.hmm for reading.
software error hmmer pfam sequencing written 2.1 years ago by dago • 2.2k • updated 2.1 years ago by venu • 3.9k
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Don't get hits on HMMER
hmmer written 2.2 years ago by Bioguy • 0 • updated 2.2 years ago by cryptogenomicon • 20
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hmmer core dumps, does not create proper MSA Stockholm format files
phmmer hmmsearch hmmer written 2.2 years ago by kdiaz17 • 0 • updated 2.2 years ago by seanrobertseddy • 50
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