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<prev • 105 results • page 1 of 4 • next >
3
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2
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4.8k
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2
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hmmindex: FATAL: failed to open HMM file Pfam-A.hmm for reading.
software error hmmer pfam sequencing written 5.7 years ago by dago • 2.6k • updated 7 days ago by sofie.thijs • 0
1
vote
1
answer
1.9k
views
1
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MSA following hmmalign/hmmsearch?
hmmer written 5.6 years ago by db534 • 10 • updated 4 weeks ago by krinsman • 0
1
vote
1
answer
304
views
1
answer
Orthofiller failing `Error: hmmerfm is not a recognized sequence database file format`
nhmmer orthofiller hmmerfm error hmmer written 11 months ago by xonq • 20
0
votes
0
answers
195
views
0
answers
hmmsearch error: Failed to open sequence file
hmmer hmmsearch pfam written 9 weeks ago by zoepklein • 0
1
vote
1
answer
158
views
1
answer
How do I extract sequences to create a fasta file from an nhmmer .out file?
fasta nhmmer alignment hmm hmmer written 12 weeks ago by carlee.bettler • 10 • updated 12 weeks ago by Fatima • 890
0
votes
1
answer
122
views
1
answer
Error installing hmmer-3.1b2-cygwin64
cygwin64 hmmer written 3 months ago by efraav • 0 • updated 3 months ago by Mensur Dlakic • 8.1k
3
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0
answers
175
views
0
answers
ITSx ITS Extraction Software Error
its1 itsx hmmer written 3 months ago by Oliver K. • 0
2
votes
1
answer
390
views
1
answer
How to keep the top hits only in the output file of hmmscan?
top hits hmmscan output hmmer written 5 months ago by Audrey • 20
5
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1
answer
384
views
1
answer
How to download a Pfam database for hmmer searches?
database hmmer pfam written 5 months ago by Audrey • 20
0
votes
1
answer
236
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1
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How do I get all sequences for one specific domain from Hmmer vs Pfam output that contains the results of many domains ?
domain hmmer pfam written 6 months ago by emilyc • 30 • updated 6 months ago by Mensur Dlakic • 8.1k
0
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0
answers
187
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0
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What should I use as a reference in hivmmer
hiv genotyping hmm hivmmer hmmer written 8 months ago by nadinezakkak • 0 • updated 7 months ago by Biostar ♦♦ 20
1
vote
1
answer
473
views
1
answer
hmmsearch vs hmmscan - e-value, speed, & output differences?
protein hmmer e-value hmmscan hmmsearch written 8 months ago by jabaron.phd • 0
0
votes
2
answers
312
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2
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Use HHblits to find homologs in multiple species ?
proteome hhblits hhsuite alignment hmmer written 8 months ago by khhgng • 70 • updated 8 months ago by Mensur Dlakic • 8.1k
0
votes
0
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178
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0
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hmmer from multiple alignment with t-coffee (proteins sequences)
alignment phmm sequence hmmer written 8 months ago by eridanus • 20
2
votes
1
answer
529
views
1
answer
Why is hmmsearch only using the 1st HMM in a concatenated HMM database?
protein domain hmmer hmm script bash written 9 months ago by O.rka • 230 • updated 9 months ago by Mensur Dlakic • 8.1k
0
votes
0
answers
745
views
0
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Top hit from phmmer
gene annotation phmmer hmmer genome written 22 months ago by mss • 40 • updated 12 months ago by tayab soomro • 0
3
votes
1
answer
389
views
1
answer
pfam tigrfam mixed database
hmmpress pfam tigrfam hmmer written 13 months ago by Moses • 120 • updated 13 months ago by Mensur Dlakic • 8.1k
6
votes
1
answer
298
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1
answer
How a protein sequence is classified in a HMM
sequencing alignment pfam hmmscan hmmer written 13 months ago by cirooliveira3 • 10 • updated 13 months ago by Mensur Dlakic • 8.1k
2
votes
2
answers
724
views
2
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HMMER installed with conda: no tutorial folder
genome installation alignment hmmer written 14 months ago by Wilber0x • 10 • updated 14 months ago by xonq • 20
0
votes
0
answers
210
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0
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Using nhmmer to identify possible primers in sequences
nhmmer primers sequence hmmer written 14 months ago by lf.marques • 0
0
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1
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2.2k
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1
answer
HMMER: hmmscan ---> hmmsearch
hmm pfam protein hmmer written 18 months ago by Metaxo • 0 • updated 14 months ago by h.mon ♦ 32k
5
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0
answers
627
views
5 follow
0
answers
InterProScan and HMMER - different results
interproscan hmmer pfam written 18 months ago by yp19 • 60 • updated 15 months ago by h.mon ♦ 32k
0
votes
0
answers
436
views
0
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Help with Hmmscan
alignment metagenome hmmscan blast hmmer written 16 months ago by Longshotx • 50
3
votes
1
answer
565
views
1
answer
Performing Hmmer search against pfam versus UniRef100
pfam forum alignment hmmer written 17 months ago by baverso • 0 • updated 17 months ago by Mensur Dlakic • 8.1k
8
votes
2
answers
4.2k
views
8 follow
2
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Filtering HmmScan Domain Results
protein domain threshold hmmscan filtering hmmer written 2.5 years ago by hewaholax • 10 • updated 21 months ago by Biostar ♦♦ 20
10
votes
1
answer
628
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1
answer
Redirecting pHMMER output to /dev/null
gene annotation hmmer protein genome written 21 months ago by mss • 40
3
votes
0
answers
376
views
0
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How do I train my sequence to have higher score in using HMMER package
hidden markov model sequence analysis hmmer written 21 months ago by howenwy2 • 0
5
votes
0
answers
521
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0
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Some question in Hmmer package
sequence alignment hmmer written 22 months ago by howenwy2 • 0
1
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1
answer
1.5k
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1
answer
hmmsearch to show all sequences
multifasta hmmsearch hmmer written 4.6 years ago by srx3001 • 10 • updated 22 months ago by jscience • 0
0
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1
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1.5k
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1
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Make a multiple sequence alignment with a HMMER hmmsearch output?
hmmer written 23 months ago by westin.kosater • 50 • updated 23 months ago by h.mon ♦ 32k
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