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Recent Replies
Answer: Italicise annotations with pheatmap
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swbarnes2
13k
You might not want to hear this...but you can probably do it with ComplexHeatMap. I put superscripts in ComplexHeatmap, so you should be a…
Answer: NanoSim Error "Please specify the training reads and its reference genome!"
by
akainth
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10
This issue is resolved upon installation of latest NanoSim.
Comment: featurecounts not working on mirbase annotation file
by
demoraesdiogo2017
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90
on the one that works. I change nothing when I use the one from mirBASE.
export FC_PATH=$(command -v featureCounts | sed 's@/bin/featu…
Comment: Trying to edit VCF file
by
peavy
•
0
Got something to work after walking back through it and deleting them from that file manually so thanks!
Comment: NCBI API, Perl
by
GenoMax
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For completeness, using web interface of `datasets`: https://www.ncbi.nlm.nih.gov/datasets/gene/
![web][1]
[1]: /media/images/1dfc4de4…
Answer: Bedtools problem : It looks as though you have less than 3 columns at line: 1.
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Michael
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I ran into this issue. It was caused by the FASTA data being included in the GFF3 file I was working with. I truncated the file starting a…
Comment: NCBI API, Perl
by
MirianT_NCBI
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590
Hi,
Following Genomax' suggestion, you can use NCBI Datasets. I used the IDs you posted to create a list.
```
LOC105370256
LOC105377806
LO…
Comment: How to quantification proteomics data
by
eqoa45
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0
Hello, can I ask how did you manage the solution?
Comment: Perl. How to retrieve data until a keyword in GenBank?
by
Fungi-Beware!
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Doing it this way outputs the info, but it doesn't preserve the paragraphs (all the info gets smashed into a single line).
Is there a way …
Comment: Is hg38 on the multiz 30-way alignment inaccurate?
by
Daniel
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30
I am referring to chr2.maf which I found here (last updated 2017): https://hgdownload.soe.ucsc.edu/goldenPath/hg38/multiz30way/maf/
PHAST …
Answer: Spatial transcriptomics without the h5 file
by
Arvin
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0
If you still have the problem,
I have stablished a code for you to read any spatial expression using gene expression and spatial coordinate…
Comment: Trying to edit VCF file
by
peavy
•
0
I'm aware. I manually typed each one but those 3 when I submitted. I actually made that mistake the first time around and only kept the 3 I…
Comment: Trying to edit VCF file
by
Pierre Lindenbaum
154k
option -S in bcftools view is for the samples you want to KEEP.
Comment: Get relationships and hierarchies for GO terms
by
Buffo
★
2.2k
Something like [GO enrichment analysis][1]?
[1]: http://geneontology.org/docs/go-enrichment-analysis/
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