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Job: Postdoc Fellow @ New York City: Alternative Splicing
splicing genomics rnaseq
1 hour ago by fanggang ▴ 100
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48
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Job: Bioinformatics Laboratory Head, WEHI, Melbourne, Australia
Australia Job
15 hours ago by Gordon Smyth ★ 2.5k
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Job: Product Manager for Online Bioinformatics Resources
Manager Product
1 day ago by jyu ▴ 40
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Job: Bioinformatics Research Analyst - Oncology
Bioinformatics genomics oncology
1 day ago by Malachi Griffith 18k
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Job: Biostatistician Job Opportunity (Bethesda, MD)
Genomics statistics Analysis Rstudio
2 days ago by christmasy • 0
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210
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Job: Opportunity to lead bioinformatics development at a fast growing, well-funded startup
NGS job R bioinformatics python
2 days ago by brian.landry • 0
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Job: Bioinformatician position in RNA biology - Eric Lai lab, MSKCC, NYC
m6A APA RNA miRNA
4 days ago by laie ▴ 10
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102
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Job: Postdoc positions at Harvard Medical School
niche postdoc stem Harvard immunology
4 days ago by Joji • 0
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166
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Job: Computational Genomics Position is Opening at Johnson & Johnson
statistical genomics job genetics
3 days ago by Shicheng Guo ★ 8.6k
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65
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Job: Postdoctoral Research Scholar with ASU and Sun Genomics - human gut microbiome and Autism
biodesign biotech autism microbiome postdoc
5 days ago by Leah • 0
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1.7k
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Job: Director of Bioinformatics Products (Bozeman MT)
Jobs
updated 17 hours ago by 32k • written 5.4 years ago by • 0
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Job: Ucsc Genome Browser Software Engineer
Job ucsc
updated 17 hours ago by 32k • written 8.3 years ago by 11k
12 results • Page 1 of 1
Recent Votes
A: Could you explain the difference between STAR, KALLISTO, SALMON etc. to experime
A: What the index means in illumina RNA-seq data file?
C: What is difference between bulk RNAseq and mRNAseq?
Answer: Taxonomy assignment of viral RNA
Answer: RNAseq data analysis of pooled data
Comment: RNAseq data analysis of pooled data
Answer: How to convert Transcripts ID of rhesus monkey to Transcripts ID of homo sapiens
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Recent Replies
Comment: Using outgroup in gene family dendograms by Mensur Dlakic ★ 10k
> Wouldn't a gene that isn't an ABC superfamily member from some distant species suffice as an outgroup candidate here? Most definitely no…
Comment: Testing independence between 5' and 3' terminal sequences in a DNA database by Istvan Albert 87k
with that definition I would suspect that all of your sequences are "dependent", I would expect every functional DNA/RNA region to capture …
Comment: Taxonomy assignment of viral RNA by biobiu ▴ 120
Thanks! As for the blast option- (1) so do you suggest to just blast the contig against a db of viral RNAs? and (2) is there a comprehensiv…
Comment: Finding how many times a nucleotide appear in the same position by cpad0112 15k
#!/usr/bin/env python3 sequences = ["GAGGTAAACTCTG", "TCCGTAAGTTTTC", "CAGGTTGGAACTC", "ACAGTCAGTTCAC", "TAGGTCATTACAG", "TAGG…
Comment: Testing independence between 5' and 3' terminal sequences in a DNA database by Anand Rao ▴ 350
Thanks for your reply. Yes, I think I could have explained my problem much better, but rather than change my original post, I will add some…
Answer: Finding how many times a nucleotide appear in the same position by Dunois ▴ 600
Here's a little `python` function you can work off of: def count_quer_at_pos_in_seq(seqs, quer = "A"): #Initialize a list…
Comment: Using outgroup in gene family dendograms by Rogerio Ribeiro ▴ 50
Thank for the fast reponse. The ABC family is not the best example for this question indeed. The objective of my work is to find genes resp…
Answer: Taxonomy assignment of viral RNA by Zhilong Jia ★ 1.7k
1. Blast directly 2. [IDSeq][1], can get viral contigs and their annotation directly. [IDSeq : An open-source cloud-based pipeline and…
Comment: Finding how many times a nucleotide appear in the same position by hugo.avila ▴ 180
Hi, It is not a norm but it is a good practice to post an attempted resolution first and then other members try to correct it or suggest an…
Comment: What Do You Waste Your Time On by ponganta ▴ 150
Aye to the rushed analyses and the last-minute documentation. Horrible, but somehow it happens all the time.
Answer: What Do You Waste Your Time On by ponganta ▴ 150
Reinventing the wheel. Like, all the time. Why use clusterProfiler with an up-to-date GO-annotation, when you can just write your own clien…
Comment: RNAseq data analysis of pooled data by ponganta ▴ 150
By "pooled" data, do you mean data from tissue-specific bulk-RNAseq? Or did you pool single cell (SC) RNAseq-libraries?
Comment: RNAseq data analysis of pooled data by Dunois ▴ 600
What exactly do you mean by "pooled" data?
Answer: RNAseq data analysis of pooled data by grant.hovhannisyan ★ 2.1k
I made a tutorial last year for University students on this topic https://www.loom.com/share/a55c1dedb8e64e7cac47f6595b751de7. Let me know …
Comment: RNAseq data analysis of pooled data by luffy • 0
@dunois Thank you for the tutorial, what are your thoughts for approach for pooled data? should i follow the documentation/the tutorial or …
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