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KisSplice output for SNPs type 0a - for are the identifiers Q1_.. Q2_.. Qn_..

kissplice written 2 days ago by thuemmler • 0

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184

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Incorrect codon sequences reported in kissplice2reftranscriptome output?

k2rnt snp kissplice written 3 months ago by andres.firrincieli • 0 • updated 12 weeks ago by vincent.lacroix • 40

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229

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The installation of KissDE

snp kissplice written 3 months ago by wangdp123 • 60 • updated 3 months ago by vincent.lacroix • 40

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216

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kissplice on TWAS analysis

next-gen rna-seq snp kissplice written 5 months ago by wangdp123 • 60 • updated 4 months ago by leandro.ishi.lima • 20

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225

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kiss2refgenome - fail in read kiss2refgenome using kissDE

kissplice written 5 months ago by cc86 • 0

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409

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Error in running kissplice2reftranscriptome

k2rt snp kissplice written 6 months ago by c.evang • 10 • updated 5 months ago by vincent.lacroix • 40

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182

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gmap psl parsing in kissplice2refgenome

software error kissplice2refgenome kissplice written 6 months ago by fabrice.legeai • 0 • updated 5 months ago by vincent.lacroix • 40

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450

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Error in running KisSplice_ks_debruijn4

kissplice written 13 months ago by c.evang • 10 • updated 6 months ago by gao131yuan • 0

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531

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error during installationi of KisSplice

c++ C rna-seq snp kissplice written 12 months ago by yoyofangliu • 0 • updated 8 months ago by vectorio9128 • 0

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319

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how to signify experiments/replica files in kissplice

snp kissplice written 8 months ago by celine • 0 • updated 8 months ago by marchetcamille • 10

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556

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Error in running "diffExpressedVariants" function in kissDE R package

kissplice snp kissde written 11 months ago by c.evang • 10 • updated 8 months ago by vincent.lacroix • 40

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335

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Error running KissDE

kissde kissplice written 11 months ago by c.evang • 10

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Recent Replies

C: Probability of having same starting base on complementary strands by banerjeeshayantan • 10
Thanks for clearing.
A: Need help inserting a custom gene sequence into ref genome and GTF file by kristoffer.vittingseerup • 210
You just have to generate a fasta file and a GTF file with the information for eCFP and then conc...
A: Explanation of BETA output by prakash • 0
Have you put this question in [BETA google group][1] ? [1]: https://groups.google.com/forum/#...
C: Merge multiple VCF files (same variants, same sample) into one VCF file by Eleanore • 0
This is a solution that I applied at first, but it does not scale since it continuously opens new...
A: How to find out whether Chip-seq peaks falls within promoter or enhancer region by prakash • 0
use [homer][1], you can define the peaks based on "distance to TSS" column as promoter or enhanc...
C: Is this RNA-seq data reliable? by vchris_ngs • 3.8k
I have few suggestions. If you are interrogating transcriptome data via RNA-Seq then it is design...
C: Installing old versions of cummeRbund by vinayjrao • 60
I am currently learning the new tuxedo protocol, but the current analysis is for a colleague who ...
C: Is this RNA-seq data reliable? by WouterDeCoster ♦ 21k
What do you mean with reliable? Per definition, RNA-seq is not well suited for variant calling.
C: Is this RNA-seq data reliable? by vchris_ngs • 3.8k
Please reformat your question and the read stats for people to read it well so that they can help...
A: Probability of having same starting base on complementary strands by Devon Ryan ♦ 70k
Yes, assuming equal probability bases, the probability of having a base and its complement at opp...
C: Why does submitting high-throughput sequence data to GEO from an Amazon EC2 inst by Michael Dondrup ♦ 42k
This might not really solve the problem but: Does geo have a way to get some hash like sha or md5...
C: Merge multiple VCF files (same variants, same sample) into one VCF file by trausch • 650
Maybe there is a more elegant solution but pipes should work: zcat custom1.vcf.gz | bcftools ann...

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