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2
votes
1
answer
201
views
1
answer
Identical splicing events reported twice with KisSplice ?
kissplice written 3 months ago by david.b.rombaut • 0 • updated 10 weeks ago by audric.cologne • 60
3
votes
1
answer
319
views
1
answer
KissDE might not work with R 4.0.2 (?) - on Ubuntu
kissplice written 7 months ago by david.b.rombaut • 0 • updated 7 months ago by audric.cologne • 60
2
votes
1
answer
251
views
1
answer
KisSplice2RefGenome version 2.0.0 error ?
kissplice written 7 months ago by david.b.rombaut • 0
0
votes
1
answer
215
views
1
answer
KisSplice error during sampling bubbles by type step
kissplice written 9 months ago by tbayer • 0
2
votes
4
answers
497
views
4
answers
Problem with ks_debruijn4 on large dataset in KisSplice
software error rna-seq kissplice written 17 months ago by david.b.rombaut • 0 • updated 10 months ago by vincent.lacroix • 130
0
votes
0
answers
216
views
0
answers
KisSplice installation failed at the make step
alignment rna-seq kissplice written 12 months ago by turchi • 0 • updated 12 months ago by zx8754 ♦ 9.9k
2
votes
3
answers
660
views
3
answers
Kissplice: Problem getting SNPs in test data
snp kissplice written 2.8 years ago by WeepingMeadow • 10 • updated 13 months ago by Biostar ♦♦ 20
0
votes
1
answer
245
views
1
answer
Error in running kissplice2reftranscriptome
k2rt snp kissplice written 15 months ago by sandravelasco911012 • 0 • updated 15 months ago by bioinformatics2020 • 570
1
vote
1
answer
857
views
1
answer
Kissplice2refgenome does not handle # in the very begining of GTF files
gtf rna-seq kissplice written 3.4 years ago by Thibault D. • 690 • updated 19 months ago by vincent.lacroix • 130
2
votes
1
answer
452
views
1
answer
Kissplice2reftranscriptome error : IndexError
k2rt snp rna-seq kissplice written 20 months ago by jfo • 40 • updated 19 months ago by vincent.lacroix • 130
0
votes
1
answer
700
views
1
answer
errors running kissplice during de-Bruijn graph
snp rna-seq kissplice written 2.2 years ago by erica • 10 • updated 2.1 years ago by leandro.ishi.lima • 90
0
votes
3
answers
415
views
3
answers
KisSplice2RefTranscriptome does not preserve cycle
kissplice2reftranscriptome ks2rt kissplice written 2.3 years ago by pauloneill27 • 0 • updated 2.3 years ago by leandro.ishi.lima • 90
1
vote
1
answer
592
views
1
answer
Error in running KisSplice
rna-seq snp kissplice written 2.4 years ago by 963786304 • 0 • updated 2.4 years ago by leandro.ishi.lima • 90
0
votes
2
answers
704
views
2
answers
error while Kissplice run
kissplice snp transcriptome written 2.4 years ago by KG • 10
0
votes
1
answer
647
views
1
answer
kissDE diffExpressedVariants Error in nls
rna-seq snp kissplice written 2.7 years ago by ovidiu • 0
2
votes
1
answer
591
views
6 follow
1
answer
error in downloading kissplice
kissplice written 2.8 years ago by archie • 100 • updated 2.8 years ago by leandro.ishi.lima • 90
3
votes
2
answers
1.0k
views
2
answers
kissplice SNP output and kissDE runtime
R kissde rna-seq snp kissplice written 2.9 years ago by erica • 10 • updated 2.9 years ago by clara.benoitp • 10
5
votes
9
answers
1.7k
views
5 follow
9
answers
Calling de novo SNPs between two species with KisSplice
kisssplice2reftranscriptome snp kissplice written 3.3 years ago by MGlenn • 0
0
votes
1
answer
870
views
1
answer
Empty output file with Kissplice2refgenome
kissplice2refgenome kissplice written 3.0 years ago by audrahuffmeyer • 0 • updated 3.0 years ago by leandro.ishi.lima • 90
0
votes
2
answers
758
views
2
answers
kissplice2reftranscriptome interpreting output
kissplice2reftranscriptome rna-seq kissplice written 3.1 years ago by rares_lucaciu • 0 • updated 3.0 years ago by vincent.lacroix • 130
0
votes
1
answer
967
views
1
answer
Kissplice "Finding BCCs" and no output fa or tsv files
twas kissplice written 3.0 years ago by audrahuffmeyer • 0 • updated 3.0 years ago by leandro.ishi.lima • 90
0
votes
1
answer
749
views
1
answer
Error before creating De Bruin Graphs
kissplice written 3.0 years ago by vshiv • 0 • updated 3.0 years ago by leandro.ishi.lima • 90
0
votes
1
answer
914
views
1
answer
k2rt couldn't deal with type3(indel) fasta?
kissplice2reftranscriptome kissplice written 3.1 years ago by ku1.heyi.92f • 0 • updated 3.1 years ago by vincent.lacroix • 130
0
votes
1
answer
888
views
1
answer
kissDE error during 'diffExpressedVariants' step: "Error in data.frame..."
R kissde snp kissplice written 3.3 years ago by TrentGenomics • 30
1
vote
1
answer
861
views
1
answer
SNPs summaries/statistics from output of KisSplice/KisSplice2RefTranscriptome
snp rna-seq kissplice written 3.3 years ago by TrentGenomics • 30
0
votes
1
answer
762
views
1
answer
KisSplice2RefTranscriptome runtime length
snp kissplice2reftranscriptome rna-seq kissplice written 3.3 years ago by TrentGenomics • 30
1
vote
1
answer
962
views
1
answer
Help to interpret results of kisSplice
kissplice rna-seq alternative splicing written 3.4 years ago by majeedaasim • 50 • updated 3.4 years ago by vincent.lacroix • 130
1
vote
1
answer
1.3k
views
1
answer
Variant detection in RNA seq datasets without a reference using kISSPLICE.
de novo rna-seq snp kissplice written 3.5 years ago by koushikponnanna • 0 • updated 3.4 years ago by vincent.lacroix • 130
0
votes
1
answer
1.1k
views
1
answer
KisSplice output for SNPs type 0a - for are the identifiers Q1_.. Q2_.. Qn_..
kissplice written 3.5 years ago by thuemmler • 0 • updated 3.4 years ago by vincent.lacroix • 130
1
vote
2
answers
884
views
2
answers
Incorrect codon sequences reported in kissplice2reftranscriptome output?
k2rnt snp kissplice written 3.8 years ago by andres.firrincieli • 1.1k • updated 3.7 years ago by vincent.lacroix • 130
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