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0
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63
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MeDIP seq data analysis (identify DMR)
macs chip-seq methylation medip methylqa written 12 days ago by iridha • 0
1
vote
0
answers
140
views
0
answers
Macs2 output shows only single basepair peak instead of a section of DNA
macs callpeak macs2 chip-seq written 8 weeks ago by fdewards • 10 • updated 7 weeks ago by kinalimeric • 20
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1
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2.2k
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1
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MACS, effective genome size
macs chip-seq written 5.9 years ago by marina-orlova • 70 • updated 10 weeks ago by Biostar ♦♦ 20
0
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0
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109
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0
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Paired End RIP-seq analysis with MACS2 reasonable parameters?
macs peak caller macs2 rna-seq rip-seq written 10 weeks ago by ddierks91 • 0
0
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1
answer
722
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1
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Diffbind error : sequences from an unspecified genome; no seqlengths
macs diffbind macs2 chip-seq granges written 2.0 years ago by erwan.scaon • 750 • updated 8 months ago by kieran.short • 0
1
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1
answer
443
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1
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UMI with MACS
macs umi chip-seq written 11 months ago by Richard • 570 • updated 11 months ago by i.sudbery ♦ 7.3k
0
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1
answer
255
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1
answer
Any pitfalls to consider when using MACS on paired-end data when forward and reverse reads are different lengths?
macs paired-end written 11 months ago by rleach • 120
7
votes
1
answer
700
views
1
answer
Duplicated ATAC-Seq peaks called by MACS2
macs peak calling macs2 atac-seq written 14 months ago by Gary • 480 • updated 14 months ago by geek_y ♦ 10k
2
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2
answers
1.0k
views
2
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eCLIP peak calling
macs peak calling clip galaxy written 17 months ago by GiusiG • 0 • updated 15 months ago by Ashley • 50
2
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1
answer
1.3k
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1
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MACS usage for IgG and treatment
macs normalization chip-seq written 5.3 years ago by TriS • 4.2k • updated 16 months ago by Biostar ♦♦ 20
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2
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2.4k
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6 follow
2
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How does MACS algorithm work on ATAC-seq data if there is no control sample and no model estimation?
macs chip-seq written 2.4 years ago by salamandra • 280 • updated 17 months ago by jihed.chouaref • 0
2
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0
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1.2k
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0
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Possible reason for no peaks generated by MACS2
macs chip-seq written 18 months ago by Louis Kok • 20 • updated 17 months ago by Biostar ♦♦ 20
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1
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2.7k
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1
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Different results with manual MACS tool vs. workflow automated MACS tool for ChIP analysis
macs lambda workflow chip-seq forum written 5.4 years ago by christopher.paran • 0 • updated 18 months ago by zx8754 ♦ 9.1k
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0
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511
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0
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When using MACS2 with -f BAM, it is possible to have a shift other than 0?
macs macs2 written 19 months ago by Lucy • 40 • updated 18 months ago by Biostar ♦♦ 20
-1
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2
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7.1k
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5 follow
2
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Effective Genome Size In Macs [Hg19]
macs genomics written 7.4 years ago by Dataminer • 2.7k • updated 19 months ago by solo7773 • 70
0
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0
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1.0k
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0
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"olambda_treat_afterfiting_all" output file from MACS
macs bedgraph output written 5.4 years ago by akivab2 • 100 • updated 20 months ago by Biostar ♦♦ 20
1
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1
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829
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1
answer
MACS peak calling of paired-end reads in SAM format
macs chip-seq sam written 20 months ago by biostart • 340
4
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2
answers
2.2k
views
2
answers
ATAC-seq macs2 peak calling bampe mode extension shift
macs peaks chip-seq atac-seq written 22 months ago by nanoide • 40 • updated 22 months ago by Ricardo A. • 90
0
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3
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1.9k
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3
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MACS2 output (fold enrichment)
macs chipseq macs2 written 22 months ago by samantha_jeschonek • 50 • updated 22 months ago by roma • 120
39
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3
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20k
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3
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ATAC-seq peak calling with MACS
macs peaks chip-seq atac-seq written 3.6 years ago by igor ♦ 9.9k • updated 23 months ago by ZheFrench • 280
4
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1
answer
773
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1
answer
How to add Unique Peak ID to a bed file created from MACS for HOMER analysis
macs homer chip-seq written 24 months ago by Bella_p • 50 • updated 24 months ago by Benn ♦ 7.9k
0
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0
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467
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0
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MACS's option corresponding to HOMER's -sspe
macs homer paired-end chip-seq strand-specific written 2.2 years ago by ChIP-seeker • 0
3
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0
answers
922
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0
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Does MACS score correlate with binding strength
macs chip-seq written 2.4 years ago by varsha619 • 90 • updated 2.2 years ago by Biostar ♦♦ 20
9
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4
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4.8k
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7 follow
4
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How To Convert A Basic Bed File With Only 3 Columns (Chrname, Start, End Site) Into A Bigger Bed With 6 Columns
macs bed chip-seq written 8.4 years ago by Hamilton • 280 • updated 2.3 years ago by Biostar ♦♦ 20
5
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1
answer
1.6k
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1
answer
MACS for chip-seq: difference between sonication size(bandwidth) and fragment size?
macs chip-seq written 2.4 years ago by salamandra • 280 • updated 2.4 years ago by ATpoint ♦ 32k
0
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1
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1.7k
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1
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How to Find the Peak Summit Location for Broad Peaks in MACS?
macs chip-seq broad peak summit written 3.2 years ago by Neberirni • 0 • updated 2.5 years ago by ildem • 50
0
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0
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1.3k
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0
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macs 1.4 (negative) peaks
macs chip-seq written 3.0 years ago by fabrizio.frasca • 0 • updated 2.6 years ago by Biostar ♦♦ 20
3
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1
answer
946
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1
answer
Is ChIP-seq control file in peak calling must whole genome size??
macs sequence chip-seq tool written 2.7 years ago by dhehdqls • 0 • updated 2.7 years ago by geek_y ♦ 10k
1
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0
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5.0k
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0
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Peak Calling Biasing!!! [Macs14]
macs chip-seq written 7.8 years ago by Sukhdeep Singh ♦ 10k • updated 2.7 years ago by Biostar ♦♦ 20
0
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1
answer
621
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1
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Define exact peak borders
macs peak calling written 2.8 years ago by ATpoint ♦ 32k • updated 2.8 years ago by Charles Plessy • 2.7k
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