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<prev • 97 results • page 1 of 4 • next >
1
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UMI with MACS
macs umi chip-seq written 6 weeks ago by Richard • 550 • updated 6 weeks ago by i.sudbery ♦ 4.8k
0
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1
answer
92
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1
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Any pitfalls to consider when using MACS on paired-end data when forward and reverse reads are different lengths?
macs paired-end written 8 weeks ago by rleach • 120
7
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1
answer
372
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1
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Duplicated ATAC-Seq peaks called by MACS2
macs peak calling macs2 atac-seq written 4 months ago by Gary • 450 • updated 4 months ago by geek_y ♦ 9.7k
2
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2
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508
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2
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eCLIP peak calling
macs peak calling clip galaxy written 7 months ago by GiusiG • 0 • updated 5 months ago by Ashley • 50
2
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1
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1.2k
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1
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MACS usage for IgG and treatment
macs normalization chip-seq written 4.5 years ago by TriS • 3.8k • updated 7 months ago by Biostar ♦♦ 20
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2
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1.7k
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6 follow
2
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How does MACS algorithm work on ATAC-seq data if there is no control sample and no model estimation?
macs chip-seq written 19 months ago by salamandra • 200 • updated 7 months ago by jihed.chouaref • 0
2
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0
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622
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0
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Possible reason for no peaks generated by MACS2
macs chip-seq written 8 months ago by Louis Kok • 10 • updated 7 months ago by Biostar ♦♦ 20
1
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1
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1
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Different results with manual MACS tool vs. workflow automated MACS tool for ChIP analysis
macs lambda workflow chip-seq forum written 4.6 years ago by christopher.paran • 0 • updated 8 months ago by zx8754 ♦ 7.5k
0
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0
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326
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0
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When using MACS2 with -f BAM, it is possible to have a shift other than 0?
macs macs2 written 9 months ago by Lucy • 0 • updated 8 months ago by Biostar ♦♦ 20
-1
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2
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5 follow
2
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Effective Genome Size In Macs [Hg19]
macs genomics written 6.6 years ago by Dataminer • 2.6k • updated 9 months ago by solo7773 • 70
0
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0
answers
906
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0
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"olambda_treat_afterfiting_all" output file from MACS
macs bedgraph output written 4.6 years ago by akivab2 • 100 • updated 10 months ago by Biostar ♦♦ 20
1
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1
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517
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1
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MACS peak calling of paired-end reads in SAM format
macs chip-seq sam written 10 months ago by biostart • 290
4
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2
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1.4k
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2
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ATAC-seq macs2 peak calling bampe mode extension shift
macs peaks chip-seq atac-seq written 12 months ago by nanoide • 30 • updated 12 months ago by Ricardo A. • 90
0
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3
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1.1k
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3
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MACS2 output (fold enrichment)
macs chipseq macs2 written 12 months ago by samantha_jeschonek • 50 • updated 12 months ago by roma • 120
30
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3
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17k
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3
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ATAC-seq peak calling with MACS
macs peaks chip-seq atac-seq written 2.8 years ago by igor ♦ 7.7k • updated 13 months ago by ZheFrench • 220
4
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1
answer
507
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1
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How to add Unique Peak ID to a bed file created from MACS for HOMER analysis
macs homer chip-seq written 14 months ago by Bella_p • 50 • updated 14 months ago by Benn ♦ 6.9k
0
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1
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513
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1
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Diffbind error : sequences from an unspecified genome; no seqlengths
macs diffbind macs2 chip-seq granges written 15 months ago by erwan.scaon • 680 • updated 14 months ago by Rory Stark • 510
0
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0
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350
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0
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MACS's option corresponding to HOMER's -sspe
macs homer paired-end chip-seq strand-specific written 16 months ago by ChIP-seeker • 0
3
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0
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672
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0
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Does MACS score correlate with binding strength
macs chip-seq written 18 months ago by varsha619 • 80 • updated 17 months ago by Biostar ♦♦ 20
9
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4
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4.1k
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7 follow
4
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How To Convert A Basic Bed File With Only 3 Columns (Chrname, Start, End Site) Into A Bigger Bed With 6 Columns
macs bed chip-seq written 7.6 years ago by Hamilton • 260 • updated 18 months ago by Biostar ♦♦ 20
5
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1
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1.2k
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1
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MACS for chip-seq: difference between sonication size(bandwidth) and fragment size?
macs chip-seq written 19 months ago by salamandra • 200 • updated 19 months ago by ATpoint ♦ 18k
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1
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1.3k
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1
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How to Find the Peak Summit Location for Broad Peaks in MACS?
macs chip-seq broad peak summit written 2.4 years ago by Neberirni • 0 • updated 20 months ago by ildem • 40
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1.0k
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0
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macs 1.4 (negative) peaks
macs chip-seq written 2.2 years ago by fabrizio.frasca • 0 • updated 21 months ago by Biostar ♦♦ 20
3
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1
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732
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1
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Is ChIP-seq control file in peak calling must whole genome size??
macs sequence chip-seq tool written 22 months ago by dhehdqls • 0 • updated 22 months ago by geek_y ♦ 9.7k
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4.7k
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Peak Calling Biasing!!! [Macs14]
macs chip-seq written 7.0 years ago by Sukhdeep Singh ♦ 9.8k • updated 23 months ago by Biostar ♦♦ 20
0
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1
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505
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1
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Define exact peak borders
macs peak calling written 24 months ago by ATpoint ♦ 18k • updated 24 months ago by Charles Plessy • 2.7k
10
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1
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1.6k
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1
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Single-end control & Paired-end sample in Chip-seq
macs chip-seq peakcalling written 2.0 years ago by anu014 • 160 • updated 2.0 years ago by Devon Ryan ♦ 90k
3
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0
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1.0k
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0
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Problems with MACS ChIP-Seq peak calling
macs peak calling chip-seq written 2.0 years ago by dcheng1 • 0 • updated 2.0 years ago by YaGalbi • 1.4k
0
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0
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722
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0
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Compare positions of GWAS SNPs to peaks called in MACs
macs gwas catalog position snp written 2.0 years ago by cmharro • 0
2
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1
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2.2k
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1
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Filter MACS peaks by enrichment/FDR?
macs peaks next-gen chip-seq sequencing written 2.1 years ago by ggonzalezp • 0 • updated 2.1 years ago by YaGalbi • 1.4k
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