Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing: macs • reset
or   Classic search
<prev • 97 results • page 1 of 4 • next >
0
votes
1
answer
639
views
1
answer
Diffbind error : sequences from an unspecified genome; no seqlengths
macs diffbind macs2 chip-seq granges written 20 months ago by erwan.scaon • 720 • updated 3 months ago by kieran.short • 0
1
vote
1
answer
322
views
1
answer
UMI with MACS
macs umi chip-seq written 6 months ago by Richard • 570 • updated 6 months ago by i.sudbery ♦ 6.2k
0
votes
1
answer
188
views
1
answer
Any pitfalls to consider when using MACS on paired-end data when forward and reverse reads are different lengths?
macs paired-end written 7 months ago by rleach • 120
7
votes
1
answer
559
views
1
answer
Duplicated ATAC-Seq peaks called by MACS2
macs peak calling macs2 atac-seq written 9 months ago by Gary • 470 • updated 9 months ago by geek_y ♦ 10.0k
2
votes
2
answers
774
views
2
answers
eCLIP peak calling
macs peak calling clip galaxy written 12 months ago by GiusiG • 0 • updated 10 months ago by Ashley • 50
2
votes
1
answer
1.3k
views
1
answer
MACS usage for IgG and treatment
macs normalization chip-seq written 4.9 years ago by TriS • 4.0k • updated 12 months ago by Biostar ♦♦ 20
6
votes
2
answers
2.0k
views
6 follow
2
answers
How does MACS algorithm work on ATAC-seq data if there is no control sample and no model estimation?
macs chip-seq written 2.0 years ago by salamandra • 240 • updated 12 months ago by jihed.chouaref • 0
2
votes
0
answers
895
views
0
answers
Possible reason for no peaks generated by MACS2
macs chip-seq written 13 months ago by Louis Kok • 10 • updated 12 months ago by Biostar ♦♦ 20
1
vote
1
answer
2.6k
views
1
answer
Different results with manual MACS tool vs. workflow automated MACS tool for ChIP analysis
macs lambda workflow chip-seq forum written 5.0 years ago by christopher.paran • 0 • updated 13 months ago by zx8754 ♦ 8.3k
0
votes
0
answers
421
views
0
answers
When using MACS2 with -f BAM, it is possible to have a shift other than 0?
macs macs2 written 14 months ago by Lucy • 40 • updated 13 months ago by Biostar ♦♦ 20
-1
votes
2
answers
6.8k
views
5 follow
2
answers
Effective Genome Size In Macs [Hg19]
macs genomics written 7.0 years ago by Dataminer • 2.6k • updated 14 months ago by solo7773 • 70
0
votes
0
answers
978
views
0
answers
"olambda_treat_afterfiting_all" output file from MACS
macs bedgraph output written 5.0 years ago by akivab2 • 100 • updated 15 months ago by Biostar ♦♦ 20
1
vote
1
answer
675
views
1
answer
MACS peak calling of paired-end reads in SAM format
macs chip-seq sam written 15 months ago by biostart • 310
4
votes
2
answers
1.8k
views
2
answers
ATAC-seq macs2 peak calling bampe mode extension shift
macs peaks chip-seq atac-seq written 17 months ago by nanoide • 30 • updated 17 months ago by Ricardo A. • 90
0
votes
3
answers
1.5k
views
3
answers
MACS2 output (fold enrichment)
macs chipseq macs2 written 17 months ago by samantha_jeschonek • 50 • updated 17 months ago by roma • 120
37
votes
3
answers
19k
views
3
answers
ATAC-seq peak calling with MACS
macs peaks chip-seq atac-seq written 3.2 years ago by igor ♦ 8.8k • updated 18 months ago by ZheFrench • 250
4
votes
1
answer
645
views
1
answer
How to add Unique Peak ID to a bed file created from MACS for HOMER analysis
macs homer chip-seq written 19 months ago by Bella_p • 50 • updated 19 months ago by Benn ♦ 7.9k
0
votes
0
answers
411
views
0
answers
MACS's option corresponding to HOMER's -sspe
macs homer paired-end chip-seq strand-specific written 21 months ago by ChIP-seeker • 0
3
votes
0
answers
802
views
0
answers
Does MACS score correlate with binding strength
macs chip-seq written 23 months ago by varsha619 • 80 • updated 22 months ago by Biostar ♦♦ 20
9
votes
4
answers
4.5k
views
7 follow
4
answers
How To Convert A Basic Bed File With Only 3 Columns (Chrname, Start, End Site) Into A Bigger Bed With 6 Columns
macs bed chip-seq written 8.0 years ago by Hamilton • 280 • updated 23 months ago by Biostar ♦♦ 20
5
votes
1
answer
1.4k
views
1
answer
MACS for chip-seq: difference between sonication size(bandwidth) and fragment size?
macs chip-seq written 2.0 years ago by salamandra • 240 • updated 2.0 years ago by ATpoint ♦ 25k
0
votes
1
answer
1.5k
views
1
answer
How to Find the Peak Summit Location for Broad Peaks in MACS?
macs chip-seq broad peak summit written 2.8 years ago by Neberirni • 0 • updated 2.1 years ago by ildem • 50
0
votes
0
answers
1.1k
views
0
answers
macs 1.4 (negative) peaks
macs chip-seq written 2.6 years ago by fabrizio.frasca • 0 • updated 2.2 years ago by Biostar ♦♦ 20
3
votes
1
answer
844
views
1
answer
Is ChIP-seq control file in peak calling must whole genome size??
macs sequence chip-seq tool written 2.3 years ago by dhehdqls • 0 • updated 2.3 years ago by geek_y ♦ 10.0k
1
vote
0
answers
4.9k
views
0
answers
Peak Calling Biasing!!! [Macs14]
macs chip-seq written 7.4 years ago by Sukhdeep Singh ♦ 9.9k • updated 2.3 years ago by Biostar ♦♦ 20
0
votes
1
answer
568
views
1
answer
Define exact peak borders
macs peak calling written 2.4 years ago by ATpoint ♦ 25k • updated 2.4 years ago by Charles Plessy • 2.7k
10
votes
1
answer
1.9k
views
1
answer
Single-end control & Paired-end sample in Chip-seq
macs chip-seq peakcalling written 2.4 years ago by anu014 • 170 • updated 2.4 years ago by Devon Ryan ♦ 92k
3
votes
0
answers
1.2k
views
0
answers
Problems with MACS ChIP-Seq peak calling
macs peak calling chip-seq written 2.5 years ago by dcheng1 • 0 • updated 2.5 years ago by YaGalbi • 1.4k
0
votes
0
answers
832
views
0
answers
Compare positions of GWAS SNPs to peaks called in MACs
macs gwas catalog position snp written 2.5 years ago by cmharro • 0
3
votes
1
answer
2.5k
views
6 follow
1
answer
Filter MACS peaks by enrichment/FDR?
macs peaks next-gen chip-seq sequencing written 2.5 years ago by ggonzalezp • 10 • updated 2.5 years ago by YaGalbi • 1.4k
<prev • 97 results • page 1 of 4 • next >
Recent Votes
Recent Locations • All »
  • Flagstaff, just now
  • University of Macau, 4 minutes ago
  • Israel, 5 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1166 users visited in the last hour