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<prev • 95 results • page 1 of 4 • next >
7
votes
1
answer
129
views
1
answer
Duplicated ATAC-Seq peaks called by MACS2
macs peak calling macs2 atac-seq written 17 days ago by Gary • 450 • updated 16 days ago by geek_y ♦ 9.1k
2
votes
2
answers
244
views
2
answers
eCLIP peak calling
macs peak calling clip galaxy written 3 months ago by GiusiG • 0 • updated 5 weeks ago by Ashley • 40
2
votes
1
answer
1.1k
views
1
answer
MACS usage for IgG and treatment
macs normalization chip-seq written 4.2 years ago by TriS • 3.6k • updated 3 months ago by Biostar ♦♦ 20
6
votes
2
answers
1.4k
views
6 follow
2
answers
How does MACS algorithm work on ATAC-seq data if there is no control sample and no model estimation?
macs chip-seq written 15 months ago by salamandra • 180 • updated 3 months ago by jihed.chouaref • 0
1
vote
0
answers
347
views
0
answers
Possible reason for no peaks generated by MACS2
macs chip-seq written 4 months ago by Louis Kok • 10 • updated 3 months ago by Biostar ♦♦ 20
1
vote
1
answer
2.4k
views
1
answer
Different results with manual MACS tool vs. workflow automated MACS tool for ChIP analysis
macs lambda workflow chip-seq forum written 4.2 years ago by christopher.paran • 0 • updated 4 months ago by zx8754 ♦ 6.5k
0
votes
0
answers
224
views
0
answers
When using MACS2 with -f BAM, it is possible to have a shift other than 0?
macs macs2 written 5 months ago by Lucy • 0 • updated 4 months ago by Biostar ♦♦ 20
-1
votes
2
answers
6.0k
views
5 follow
2
answers
Effective Genome Size In Macs [Hg19]
macs genomics written 6.3 years ago by Dataminer • 2.6k • updated 5 months ago by solo7773 • 70
0
votes
0
answers
855
views
0
answers
"olambda_treat_afterfiting_all" output file from MACS
macs bedgraph output written 4.2 years ago by akivab2 • 60 • updated 6 months ago by Biostar ♦♦ 20
1
vote
1
answer
327
views
1
answer
MACS peak calling of paired-end reads in SAM format
macs chip-seq sam written 6 months ago by biostart • 280
4
votes
2
answers
937
views
2
answers
ATAC-seq macs2 peak calling bampe mode extension shift
macs peaks chip-seq atac-seq written 8 months ago by nanoide • 10 • updated 8 months ago by Ricardo A. • 90
0
votes
3
answers
765
views
3
answers
MACS2 output (fold enrichment)
macs chipseq macs2 written 8 months ago by samantha_jeschonek • 50 • updated 8 months ago by roma • 120
29
votes
3
answers
16k
views
3
answers
ATAC-seq peak calling with MACS
macs peaks chip-seq atac-seq written 2.5 years ago by igor ♦ 7.3k • updated 9 months ago by ZheFrench • 190
4
votes
1
answer
391
views
1
answer
How to add Unique Peak ID to a bed file created from MACS for HOMER analysis
macs homer chip-seq written 10 months ago by Bella_p • 50 • updated 10 months ago by b.nota ♦ 6.0k
0
votes
1
answer
420
views
1
answer
Diffbind error : sequences from an unspecified genome; no seqlengths
macs diffbind macs2 chip-seq granges written 11 months ago by erwan.scaon • 630 • updated 10 months ago by Rory Stark • 480
0
votes
0
answers
299
views
0
answers
MACS's option corresponding to HOMER's -sspe
macs homer paired-end chip-seq strand-specific written 12 months ago by ChIP-seeker • 0
3
votes
0
answers
520
views
0
answers
Does MACS score correlate with binding strength
macs chip-seq written 14 months ago by varsha619 • 70 • updated 13 months ago by Biostar ♦♦ 20
9
votes
4
answers
3.9k
views
7 follow
4
answers
How To Convert A Basic Bed File With Only 3 Columns (Chrname, Start, End Site) Into A Bigger Bed With 6 Columns
macs bed chip-seq written 7.2 years ago by Hamilton • 260 • updated 14 months ago by Biostar ♦♦ 20
5
votes
1
answer
945
views
1
answer
MACS for chip-seq: difference between sonication size(bandwidth) and fragment size?
macs chip-seq written 15 months ago by salamandra • 180 • updated 15 months ago by ATpoint ♦ 13k
0
votes
1
answer
1.1k
views
1
answer
How to Find the Peak Summit Location for Broad Peaks in MACS?
macs chip-seq broad peak summit written 2.1 years ago by Neberirni • 0 • updated 15 months ago by ildem • 20
0
votes
0
answers
843
views
0
answers
macs 1.4 (negative) peaks
macs chip-seq written 22 months ago by fabrizio.frasca • 0 • updated 17 months ago by Biostar ♦♦ 20
3
votes
1
answer
638
views
1
answer
Is ChIP-seq control file in peak calling must whole genome size??
macs sequence chip-seq tool written 18 months ago by dhehdqls • 0 • updated 18 months ago by geek_y ♦ 9.1k
1
vote
0
answers
4.6k
views
0
answers
Peak Calling Biasing!!! [Macs14]
macs chip-seq written 6.7 years ago by Sukhdeep Singh ♦ 9.6k • updated 19 months ago by Biostar ♦♦ 20
0
votes
1
answer
454
views
1
answer
Define exact peak borders
macs peak calling written 19 months ago by ATpoint ♦ 13k • updated 19 months ago by Charles Plessy • 2.6k
10
votes
1
answer
1.3k
views
1
answer
Single-end control & Paired-end sample in Chip-seq
macs chip-seq peakcalling written 20 months ago by anu014 • 160 • updated 20 months ago by Devon Ryan ♦ 88k
3
votes
0
answers
876
views
0
answers
Problems with MACS ChIP-Seq peak calling
macs peak calling chip-seq written 20 months ago by dcheng1 • 0 • updated 20 months ago by YaGalbi • 1.4k
0
votes
0
answers
615
views
0
answers
Compare positions of GWAS SNPs to peaks called in MACs
macs gwas catalog position snp written 20 months ago by cmharro • 0
2
votes
1
answer
1.8k
views
1
answer
Filter MACS peaks by enrichment/FDR?
macs peaks next-gen chip-seq sequencing written 21 months ago by ggonzalezp • 0 • updated 21 months ago by YaGalbi • 1.4k
5
votes
4
answers
4.0k
views
5 follow
4
answers
Annotation of ChIP-seq peaks after MACS
macs chip-seq peak annotation written 22 months ago by dorota.komar • 10 • updated 22 months ago by meer.k.mustafa • 0
0
votes
1
answer
644
views
1
answer
Finding Gene names from chromosome positions whilst maintaining fold change and p and q values
macs galaxy chip-seq written 22 months ago by benjyrolls • 70 • updated 22 months ago by Devon Ryan ♦ 88k
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