Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing selected topics • reset
or   Classic search
<prev • 101 results • page 1 of 4 • next >
3
votes
0
answers
219
views
0
answers
peak summit in macs not the highest point
macs peak summit written 7 months ago by blur • 150
0
votes
0
answers
210
views
0
answers
MeDIP seq data analysis (identify DMR)
macs chip-seq methylation medip methylqa written 9 months ago by iridha • 0
1
vote
0
answers
290
views
0
answers
Macs2 output shows only single basepair peak instead of a section of DNA
macs callpeak macs2 chip-seq written 11 months ago by fdewards • 10 • updated 11 months ago by kinalimeric • 30
1
vote
1
answer
2.4k
views
1
answer
MACS, effective genome size
macs chip-seq written 6.6 years ago by marina-orlova • 80 • updated 11 months ago by Biostar ♦♦ 20
0
votes
0
answers
353
views
0
answers
Paired End RIP-seq analysis with MACS2 reasonable parameters?
macs peak caller macs2 rna-seq rip-seq written 12 months ago by ddierks91 • 0
0
votes
1
answer
933
views
1
answer
Diffbind error : sequences from an unspecified genome; no seqlengths
macs diffbind macs2 chip-seq granges written 2.8 years ago by erwan.scaon • 810 • updated 17 months ago by kieran.short • 0
1
vote
1
answer
640
views
1
answer
UMI with MACS
macs umi chip-seq written 20 months ago by Richard • 570 • updated 20 months ago by i.sudbery ♦ 10k
0
votes
1
answer
379
views
1
answer
Any pitfalls to consider when using MACS on paired-end data when forward and reverse reads are different lengths?
macs paired-end written 21 months ago by rleach • 120
7
votes
1
answer
1.0k
views
1
answer
Duplicated ATAC-Seq peaks called by MACS2
macs peak calling macs2 atac-seq written 23 months ago by Gary • 480 • updated 23 months ago by geek_y ♦ 11k
3
votes
2
answers
1.6k
views
2
answers
eCLIP peak calling
macs peak calling clip galaxy written 2.2 years ago by GiusiG • 10 • updated 2.0 years ago by Ashley • 70
2
votes
1
answer
1.5k
views
1
answer
MACS usage for IgG and treatment
macs normalization chip-seq written 6.1 years ago by TriS • 4.3k • updated 2.2 years ago by Biostar ♦♦ 20
7
votes
2
answers
2.9k
views
6 follow
2
answers
How does MACS algorithm work on ATAC-seq data if there is no control sample and no model estimation?
macs chip-seq written 3.2 years ago by salamandra • 350 • updated 2.2 years ago by jihed.chouaref • 0
2
votes
0
answers
1.8k
views
0
answers
Possible reason for no peaks generated by MACS2
macs chip-seq written 2.3 years ago by Louis Kok • 20 • updated 2.2 years ago by Biostar ♦♦ 20
1
vote
1
answer
2.8k
views
1
answer
Different results with manual MACS tool vs. workflow automated MACS tool for ChIP analysis
macs lambda workflow chip-seq forum written 6.1 years ago by christopher.paran • 0 • updated 2.3 years ago by zx8754 ♦ 9.9k
0
votes
0
answers
674
views
0
answers
When using MACS2 with -f BAM, it is possible to have a shift other than 0?
macs macs2 written 2.4 years ago by Lucy • 60 • updated 2.3 years ago by Biostar ♦♦ 20
-1
votes
2
answers
7.7k
views
5 follow
2
answers
Effective Genome Size In Macs [Hg19]
macs genomics written 8.2 years ago by Dataminer • 2.7k • updated 2.4 years ago by solo7773 • 70
0
votes
0
answers
1.1k
views
0
answers
"olambda_treat_afterfiting_all" output file from MACS
macs bedgraph output written 6.1 years ago by akivab2 • 100 • updated 2.4 years ago by Biostar ♦♦ 20
1
vote
1
answer
1.1k
views
1
answer
MACS peak calling of paired-end reads in SAM format
macs chip-seq sam written 2.5 years ago by biostart • 350
4
votes
2
answers
3.1k
views
2
answers
ATAC-seq macs2 peak calling bampe mode extension shift
macs peaks chip-seq atac-seq written 2.6 years ago by nanoide • 60 • updated 2.6 years ago by Ricardo A. • 90
0
votes
3
answers
2.7k
views
3
answers
MACS2 output (fold enrichment)
macs chipseq macs2 written 2.6 years ago by samantha_jeschonek • 50 • updated 2.6 years ago by roma • 120
43
votes
3
answers
23k
views
3
answers
ATAC-seq peak calling with MACS
macs peaks chip-seq atac-seq written 4.4 years ago by igor ♦ 12k • updated 2.7 years ago by ZheFrench • 310
4
votes
1
answer
1.1k
views
1
answer
How to add Unique Peak ID to a bed file created from MACS for HOMER analysis
macs homer chip-seq written 2.8 years ago by Bella_p • 50 • updated 2.8 years ago by Benn ♦ 8.0k
0
votes
0
answers
570
views
0
answers
MACS's option corresponding to HOMER's -sspe
macs homer paired-end chip-seq strand-specific written 2.9 years ago by ChIP-seeker • 0
3
votes
0
answers
1.3k
views
0
answers
Does MACS score correlate with binding strength
macs chip-seq written 3.1 years ago by varsha619 • 90 • updated 3.0 years ago by Biostar ♦♦ 20
9
votes
4
answers
5.4k
views
7 follow
4
answers
How To Convert A Basic Bed File With Only 3 Columns (Chrname, Start, End Site) Into A Bigger Bed With 6 Columns
macs bed chip-seq written 9.1 years ago by Hamilton • 280 • updated 3.1 years ago by Biostar ♦♦ 20
5
votes
1
answer
2.1k
views
1
answer
MACS for chip-seq: difference between sonication size(bandwidth) and fragment size?
macs chip-seq written 3.2 years ago by salamandra • 350 • updated 3.2 years ago by ATpoint ♦ 44k
0
votes
1
answer
2.1k
views
1
answer
How to Find the Peak Summit Location for Broad Peaks in MACS?
macs chip-seq broad peak summit written 4.0 years ago by Neberirni • 0 • updated 3.2 years ago by ildem • 50
0
votes
0
answers
1.6k
views
0
answers
macs 1.4 (negative) peaks
macs chip-seq written 3.8 years ago by fabrizio.frasca • 0 • updated 3.3 years ago by Biostar ♦♦ 20
3
votes
1
answer
1.1k
views
1
answer
Is ChIP-seq control file in peak calling must whole genome size??
macs sequence chip-seq tool written 3.5 years ago by dhehdqls • 0 • updated 3.5 years ago by geek_y ♦ 11k
1
vote
0
answers
5.3k
views
0
answers
Peak Calling Biasing!!! [Macs14]
macs chip-seq written 8.6 years ago by Sukhi Singh ♦ 10k • updated 3.5 years ago by Biostar ♦♦ 20
<prev • 101 results • page 1 of 4 • next >
Recent Votes
Recent Locations • All »
  • United Kingdom, 1 minute ago
  • Belgium, Brussels, 5 minutes ago
  • Canada, 5 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1374 users visited in the last hour