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MeDIP seq data analysis (identify DMR)

macs chip-seq methylation medip methylqa written 11 months ago by iridha • 0

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203

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MeDIP seq data analysis

peak peak calling aligment medip methylation written 11 months ago by iridha • 0 • updated 11 months ago by GenoMax ♦ 96k

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300

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How comparable is MeDIP-Seq with RRBS/WGBS?

wgbs medip rrbs written 16 months ago by Deepak Tanwar • 4.1k

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896

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QSEA package - Enrichement parameters choice (addEnrichmentParameters)

medips qsea methylation medip written 3.3 years ago by lech.kaczmarczyk • 50

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1.1k

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Peak calling on MeDIP data

medip written 3.4 years ago by lech.kaczmarczyk • 50

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766

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Low reads mapping in methylation sequencing

medip mapping written 3.6 years ago by SJ Basu • 30 • updated 3.6 years ago by Chris Miller ♦ 21k

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950

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Comparison of MeDIP data with transcriptomics expression data

medip rna seq written 3.9 years ago by saripalligautam86 • 0

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1.6k

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Comparison of two MeDip data sets

chip-seq medip hmedip written 5.1 years ago by florian.noack • 20

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1.9k

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Convert MEDIP-seq RMS values into AMS using MEDIP

methylation medip written 6.0 years ago by rdbcasillas11 • 10 • updated 6.0 years ago by Devon Ryan ♦ 98k

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Recent Replies

A: Can We Have A Collection Of Interesting Research Topics? by 5heikki ♦ 9.3k
I would love to see a fully parallelized affinity propagation implementation or at least somethin...
C: Fisher exact test for 2 by 20000 table and for 4 by 20000 table by brunobsouzaa • 500
What have you tried already? You can import your table in `R`, perform `fisher.test(data)` and se...
C: Retrieve unique human membrane protein coding genes in Uniprot by GenoMax ♦ 96k
> human membrane protein coding Do you mean genes that are coding for proteins that are targe...
C: What are the best quantification tools for miRNA seq? by cecilomar6 • 0
The samples were sequenced by BGI genomics, and the fasq files they send you are supposedly alrea...
C: Convert Gene IDs of Tomato Sol Database by dimitrischat • 130
could i have this id sheet please ? my email is dimitrischat @ gmail . com thanks in advance
C: Convert Gene IDs of Tomato Sol Database by dimitrischat • 130
hey, could you please send me this excel sheet? you need my email or something? thanks
C: What are the best quantification tools for miRNA seq? by rajpal22288 • 50
Can you mention the whole workflow you followed? starting from trimming and adapter removal! We h...
C: Mapping a short primer sequence to a whole genome by robert.murphy • 30
This seems to be a tool for generating primer pairs?
A: What dataset do I use to annotate a transcriptome? Another transcriptome or a ge by lieven.sterck ♦ 10.0k
that depends on your goal. if you want to annotate the transcripts functionally, you'll be bette...
C: How do I use FindAllMarkers after making additional cluster assignments? by fracarb8 • 70
I don't see it in your code, but you should also set the default assay to RNA, as the DE analysis...
C: How to install R in WinSCP server by Fede_Santos95 • 0
Thank u for your help!
C: Plot phylogenetic tree with all ancestor nodes by AfinaM • 0
Hi, I have edited the post.

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