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Recent Replies
Comment: probability of two samples sharing a SNP by error
by
karl.stamm
4.0k
What does by chance mean? Do you think errors show up from totally random cosmic rays, or maybe something intrinsic in the instrumentation.…
Comment: how to understand this "Jaccard distance" ?
by
lauren
•
0
To echo 2001linana's question below, where is this requirement for the same size dataset coming from?
Answer: How can I convert ensembl exon ID to gene symbol in a gene count dataframe?
by
Emily_Ensembl
22k
You could use the [Ensembl REST API](http://rest.ensembl.org/documentation). You can use the [lookup/id endpoint](http://rest.ensembl.org/d…
Answer: Plink --merge-list only outputting fam
by
chrchang523
8.4k
If plink is only generating a .fam, that implies that an error occurred. Yet you did not post a .log containing the error message, or desc…
Answer: probability of two samples sharing a SNP by error
by
SemiQuant
▴
70
Would this give me the probability of the same error in two samples?
r1 <- error_rate*(read_depth/1000)
(r1*r1)*gene_length
…
Answer: scVelo on Seurat umap
by
Badran
▴
50
There is also [this guide from Seurat](http://htmlpreview.github.io/?https://github.com/satijalab/seurat-wrappers/blob/master/docs/scvelo.h…
Answer: Plink --merge-list only outputting fam
by
J
•
0
Rather than further pursuing this path, I am taking a step back and merging the VCF files and then using plink, which I did not consider be…
Comment: Which files from PacBio output files to use in downstream analysis in R
by
Buffo
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1.9k
I strongly recommend you to read [PacBio file formats][1] or asking your core facility. In order to get help for further analysis I suggest…
Comment: A paid job for data donwloading task
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mibtisamnasar
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0
please contact me at
> mibtisamnasar[at]gmail[dot]com
Comment: how to draw 3d histogram with errorbar using R
by
rpolicastro
5.8k
Can you provide an example figure of what you want?
Comment: How to remove redundant sequences from fasta file ?
by
cpad0112
17k
$ printf '>A1\nATTG\n>A2\nTTTA\n>A3\nATTG\n' | awk '/^>/ NR > 1 {getline seq; print $0,seq}' | sort -uk2,2 | tr -s " " "\n"
works if s…
Comment: Why there are same name with different value in my microarray result?
by
Aki
•
0
Thanks. I have solved with avereps function.
Comment: Weird error from BWA and BOWTIE2
by
SkyL
▴
10
I tried 50x coverage and got the same error... now I am confused .. any suggestions for debugging? Should it be something wrong with the si…
Comment: Matching my VCF genome with ClinVar
by
Ram
34k
Have you tried using a simple `bcftools annotate`? You should also `vt decompose` and `vt norm` before using `bcftools` to ensure your VCF …
Comment: Removing uncovered transcripts from multi FASTA reference file
by
ella
•
0
Thank you as well ATpoint, sounds like this was exactly what I was looking for :) I will try that!
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