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Recent Replies
Comment: Single cell analysis
by
najioumayma
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20
Thanks a lot for your help , it's clear for me now.
Answer: Negative Fst values in Lositan
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andemexoax
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0
I ran into this using SNPrelate package in R to calculate FST values. The references for the SNPrelate function that computes FST
1. We…
Comment: How to extract translated sequence of a partcular gene by parsing GenBank file
by
Dunois
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770
So @8ab7ef0b , I have a solution for you.
Here's an `R` script that will download the protein sequences corresponding to your `GenBank` id…
Answer: Issue on downloading fastPHASE in Mac
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rob.dunne
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0
I have found a similar/same problem.
http://scheet.org/software.html links to http://scheet.org/code/Linuxfp.tar.gz
```
> gunzip Lin…
Comment: How can I convert .ali file to FASTA format?
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Vladimir
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Thanks a lot!!! Your script has solved my problem)
Comment: Warning messages: In svgStyleAttributes(style, svgdev) : Removing non-S
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xxxxxxxx
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res = aqm.writereport(modules = qm, arrayTable = preparedData$pData,
+ reporttitle = reportTitle , outdir =…
Comment: How can I convert .ali file to FASTA format?
by
cpad0112
15k
You can open it with a text editor (vi, nano, gedit, geany, textpad etc on GNU-linux, notepad++ on windows). However, the file seems to be …
Comment: Fetching Genbank Entries For List Of Accession Numbers.
by
d.s.account
•
0
Thank you for this solution. But its now 8 years later, is there really no better way to do this?
Comment: No space separating sequence and name PopArt error !?
by
Fabio Marroni
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2.7k
Are you using the NEXUS format? This is how the NEXUS example file looks.
BEGIN CHARACTERS;
[You can either use the matchchar opt…
Comment: How use gprofiler2 ourput visulize in Cytosape
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BISEP
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@Scooter I have tried to load GMT file output but it giving me error
Comment: How get density plot TSS region for genes of interest
by
BISEP
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@jared.andrews07 Thanks for response, I was trying to use plotprofile i am little bit confused usage of the command. I have genes list of g…
Comment: How to extract translated sequence of a partcular gene by parsing GenBank file
by
tanusharma547
•
0
Hey,
The above two records were just examples. In fact, I have a Genbank file which contains 9000 records which I retrieved using an NCBI …
Comment: Snakemake and STARsolo
by
wanaga3166
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0
Thank you, that the problems, I don't know the output for Starsolo. I think I will have 6 files:
- Log
- Feature Statistic Summaries
…
Comment: Snakemake and STARsolo
by
wanaga3166
•
0
I used this command line.
snakemake --cluster "qsub -N STAR_scRNA -l hostname=Node1 -b y" -s Snakefile4 -j 8 -n -p
> Also, what is…
Comment: How to extract translated sequence of a partcular gene by parsing GenBank file
by
Dunois
▴
770
You're going to have to share a couple of additional details with us if what you want is a "solution":
- Is this the only `GenBank` record …
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