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3
votes
2
answers
104
views
2
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Scaffolding contigs generated by minia
genome assembly denovo_assembly minia scaffolding written 5 days ago by Mostafa • 10 • updated 4 days ago by Ram ♦ 17k
1
vote
0
answers
949
views
0
answers
Internal memory allocator is full!
software error assembly next-gen minia written 2.6 years ago by cmckay • 0 • updated 4 days ago by Ram ♦ 17k
0
votes
1
answer
113
views
1
answer
Segmentation fault when running Minia v3 with some kmer values
software error assembly minia written 6 weeks ago by matthew.nicotra • 0 • updated 5 weeks ago by Rayan Chikhi • 1.4k
5
votes
1
answer
149
views
1
answer
Minia: Pool allocation failed for 68766984 bytes (kmers alloc), mainbuffer is null?.
assembly minia written 8 weeks ago by Beuss • 100 • updated 7 weeks ago by guillaume.rizk • 40
3
votes
1
answer
322
views
1
answer
Minia assembler restart after error?
assembly minia written 7 months ago by avismirabilis • 40 • updated 7 months ago by Rayan Chikhi • 1.4k
6
votes
1
answer
1.3k
views
1
answer
Minia bug: max rehashes reached: 65536000 (notify a developer)
assembly minia bug written 3.3 years ago by fungopoo • 10 • updated 11 months ago by Biostar ♦♦ 20
0
votes
1
answer
527
views
1
answer
Error: MPHF is not injective in Minia
genome assembly mphf minia error written 15 months ago by k.e.cadorna • 0 • updated 12 months ago by Rayan Chikhi • 1.4k
0
votes
1
answer
448
views
1
answer
Does Minia discard singletons?
minia written 19 months ago by stacy734 • 30 • updated 12 months ago by Rayan Chikhi • 1.4k
0
votes
0
answers
422
views
0
answers
Minia stuck - I don't know if my routine is still running
minia written 13 months ago by barbarahufnagel • 0
1
vote
1
answer
559
views
1
answer
minia seg fault (core dump) after inability to unlink mphf temp files?
assembly minia written 17 months ago by mmelendrez • 10 • updated 14 months ago by malaya77 • 0
1
vote
1
answer
593
views
1
answer
Minia estimated genome size
genome assembly minia written 21 months ago by stacy734 • 30 • updated 21 months ago by Rayan Chikhi • 1.4k
0
votes
0
answers
568
views
0
answers
Mina recompile for larger kmer error
recompile kmer minia written 2.1 years ago by JackyBurton • 0
1
vote
1
answer
661
views
1
answer
Minia bug with "--debloom original"
minia written 2.2 years ago by shammond • 0 • updated 2.2 years ago by Rayan Chikhi • 1.4k
0
votes
0
answers
1.2k
views
0
answers
Minia crashes during kmer counting
minia written 2.4 years ago by shammond • 0
0
votes
1
answer
922
views
1
answer
minia 2.0.3 problem building from source - hdf5/hdf5.h missing?
minia written 2.8 years ago by Torst • 880 • updated 2.8 years ago by Rayan Chikhi • 1.4k
0
votes
0
answers
1.2k
views
0
answers
Minia was killed when counting kmer and abundance-min choice
minia written 2.9 years ago by caizexi123 • 40
2
votes
1
answer
1.0k
views
1
answer
minia kmer limit
assembly minia written 2.9 years ago by orange • 30 • updated 2.9 years ago by edrezen • 700
0
votes
0
answers
741
views
0
answers
traversal stats explanations
assembly contig quast traversal minia written 3.0 years ago by pbigbig • 190
1
vote
1
answer
1.9k
views
1
answer
Scaffolding with SSPACE returned scaffold the same as initial contigs set
sspace minia written 3.0 years ago by pbigbig • 190 • updated 3.0 years ago by Damian Kao ♦ 15k
0
votes
1
answer
866
views
1
answer
Problems trying to run simple_test in linux binary distribution
minia dsk written 3.1 years ago by rsharris • 20 • updated 3.1 years ago by Rayan Chikhi • 1.4k
2
votes
0
answers
2.0k
views
0
answers
Input File Formats in Haploview
assembly minia written 3.3 years ago by jgocejo • 10
5
votes
1
answer
1.4k
views
1
answer
Forum: Behavior of short read assemblers regarding filtering out short contigs
assembly forum spades velvet minia written 3.4 years ago by Rayan Chikhi • 1.4k • updated 3.4 years ago by Damian Kao ♦ 15k
2
votes
1
answer
892
views
1
answer
Adding read information to dBG nodes
gatb minia written 3.4 years ago by R.Fuentes • 10
2
votes
1
answer
937
views
1
answer
DSK ignores abundance-max
minia dsk written 3.4 years ago by oiz67311 • 0 • updated 3.4 years ago by edrezen • 700
0
votes
0
answers
1.1k
views
0
answers
Minia exits with error in "Debloom: cascading" stage
minia error written 3.4 years ago by Shellfishgene • 40
4
votes
1
answer
1.0k
views
1
answer
Forum: possible bug: can make minia run forever with a bogus FASTA
forum minia written 3.5 years ago by adam.ewing • 0 • updated 3.5 years ago by Rayan Chikhi • 1.4k
8
votes
0
answers
2.3k
views
0
answers
News: New versions of Minia and DSK (2.0.x)
assembly news minia gatb dsk written 3.6 years ago by Rayan Chikhi • 1.4k
3
votes
1
answer
1.4k
views
1
answer
Problem to compile the Software Minia
assembly next-gen compile minia written 3.6 years ago by alecloic • 40 • updated 3.6 years ago by Rayan Chikhi • 1.4k
5
votes
1
answer
1.1k
views
1
answer
News: New version of the GATB library
news next-gen gatb minia dsk written 3.6 years ago by edrezen • 700 • updated 3.6 years ago by Rayan Chikhi • 1.4k
11
votes
4
answers
2.8k
views
4
answers
Tool: Mapsembler2 targeted micro assembly and visualization of the local assembly graph
assembly next-gen tool minia mapsembler written 4.1 years ago by pierre.peterlongo • 830 • updated 3.7 years ago by shelkmike • 70
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