Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : today
all time
today
this week
this month
this year
0 results • Page
1 of 1
Sort: Votes
Rank
Views
Votes
Replies
Topic contains no posts.
No posts found.
0 results • Page
1 of 1
Recent Votes
Answer: Filtering multiple-samples VCF by genotype with GATK
Finding Specific Types of Data for Cancer Studies
Comment: AF = 0.5 in chrX, VCF of a male
Answer: How to get intersected variants between multiple vcf files?
Comment: Reading in input file into a Snakemake pipeline
Comment: Are upset plots bad for differential expression analysis?
Comment: How to check Burrows-Wheeler Aligner (BWA) version on my terminal?
Recent Locations •
All
Canada/University of Manitoba,
just now
Brazil,
just now
Memphis, TN,
just now
Turkey,
2 minutes ago
France/Nantes/Institut du Thorax - INSERM UMR1087,
2 minutes ago
china/Urumqi/xinjiang academy of animal scinces,
3 minutes ago
Spain,
3 minutes ago
Recent Awards •
All
Popular Question
to
Kurban
▴ 230
Scholar
to
i.sudbery
15k
Centurion
to
Dave Carlson
▴ 870
Scholar
to
LChart
▴ 380
Popular Question
to
bharata1803
▴ 550
Popular Question
to
Rob
▴ 130
Teacher
to
bkleiboeker
▴ 40
Recent Replies
Comment: Sudden drop in coverage in single-cell RNA-sequencing data
by
tien
▴ 10
Hi, sorry for my bad question. This screenshot is not about my data but my data behaves the same and I did take umi into account when plott…
Comment: How to calculate position-specific fastq stats?
by
O.rka
▴ 610
Thanks, that's good to know. I ended up writing one last night and updated the question.
Comment: Are upset plots bad for differential expression analysis?
by
paulimer
▴ 10
> Whichever direction has the smallest product of p-values (i.e., which is more significant under a Fisher's method meta-analysis)? That's…
Answer: Filtering multiple-samples VCF by genotype with GATK
by
LChart
▴ 380
I think you either need to escape the inner quotes, or use single outer-quotes and double inner quotes `'vc.getGenotype("sample1").isHom…
Comment: Reading in input file into a Snakemake pipeline
by
Timotheus
▴ 10
Makes sense, thank you!!
Answer: RNAseq matrix input for WGCNA analysis
by
LChart
▴ 380
You should be able to pass in `$abundance` to WGCNA methods directly: ``` library(tximportData) library(tximport) library(WGCNA) d…
Comment: How to check Burrows-Wheeler Aligner (BWA) version on my terminal?
by
appropiate
▴ 30
That was embarrassingly simple, thanks!
Answer: How to get intersected variants between multiple vcf files?
by
Jeremy Leipzig
20k
i would use vt to normalize and decompose your vcfs first - that should put all the multiallelic events on different lines https://genome.…
Answer: How to check Burrows-Wheeler Aligner (BWA) version on my terminal?
by
Dave Carlson
▴ 870
Just run the `bwa` command without the `--version` flag: > $ bwa > > Program: bwa (alignment via Burrows-Wheeler transformation) Ve…
Comment: Why are reads from a region of a gene but not recongined as a mapped reads>
by
Pierre Lindenbaum
147k
why a screenshot of samtools when you can just copy and paste the text. Save the planet.
Comment: Using Harmony on scATAC Count Files
by
bioinformatics.girl
• 0
Thank you so much LChart!
Comment: error in kmergenie compilation
by
Shakunthala Natarajan
• 0
Thank you for pointing that out. I compiled it and it now works. Thanks a lot!
Comment: Are upset plots bad for differential expression analysis?
by
LChart
▴ 380
> Could you elaborate on what do you mean by discordant differential expression? Significant, but opposite sign. > provided I find an ele…
Comment: AF = 0.5 in chrX, VCF of a male
by
paolo
▴ 10
So, can I consider calls like these of good quality and assume the REF allele?
Comment: error in kmergenie compilation
by
GenoMax
118k
As the [**README**][1] says, you have to compile the program before you can use it. [1]: http://kmergenie.bx.psu.edu/README
Traffic: 1855 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6