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edgeR : How to test differential exon usage on case/control study across all time points when accounting for the within subject variability?
model time-course model.matrix edger lrt written 2.0 years ago by sarin.heikki.v • 10 • updated 19 days ago by h.mon ♦ 26k
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126
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Extracting Residuals from Differential Expression Model
model residuals limma statistics written 5 weeks ago by JourneyToAbyss • 80
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1
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4.9k
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1
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How To Build A Custom Model File In Genemark?
gene model prediction written 9.2 years ago by Panos • 1.7k • updated 11 months ago by RamRS ♦ 23k
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0
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233
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Building a classifier model for sub tumours?
model software error rna-seq written 14 months ago by Pin.Bioinf • 250
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1
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659
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1
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How to convert SBML level 3 into SBML level 2
bigg model modelling sbml reconstruction written 18 months ago by Izal • 10 • updated 18 months ago by mhucka • 0
2
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1
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723
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1
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Efficient way to check pdb enzyme protein models with certain mutations if the active site still works?
pdb model homology enzyme written 23 months ago by skim • 30 • updated 23 months ago by jrj.healey ♦ 13k
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Compare mus musculus and mus spretus genome structure annotation
gene model annotation written 23 months ago by arta • 540
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658
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Job: Post-doc in mathematical modeling on phenotypic evolution and embryonic development, University of Helsinki, Finland
model simulation job embryonic development written 2.0 years ago by isaac.salazar • 0 • updated 2.0 years ago by genomax ♦ 70k
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1
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573
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1
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Biopython: Weird error when adding coordinates of two sets
model python biopython structure written 2.2 years ago by souparnoa91 • 10 • updated 2.2 years ago by Rodrigo • 140
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502
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Interpreting jmodeltest2 using transposon sequences results
model transposon jmodeltest2 long terminal repeats written 2.2 years ago by mcsimenc • 10
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1
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6 follow
1
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Draw Gene Models From Gff3 File
gene model visualization written 5.5 years ago by inadamj • 50 • updated 2.3 years ago by Biostar ♦♦ 20
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803
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FBA to simulate bacteria growth on different growth medium
model fba written 2.7 years ago by cl10101 • 80
15
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7
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7 follow
7
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How To Compare Gene Models
gene model comparison written 8.9 years ago by Gvj • 440 • updated 2.7 years ago by hazzardwallace • 0
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1.1k
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SEIR-SEI model in Python
model sei seir seir-sei python written 2.8 years ago by playerraa • 0
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1.9k
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Model Adjustment For Microarray
model microarray written 6.1 years ago by jerome.lane.34 • 60 • updated 2.8 years ago by Biostar ♦♦ 20
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1
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1
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Any tutorial for metabolic model reconstruction?
model kbase optflux written 4.2 years ago by Dgg32 • 60 • updated 2.9 years ago by flight505 • 0
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1
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951
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1
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Model Matrix Design - Replicates Within and Between Batches
model replicate model matrix deseq written 3.0 years ago by adamlangenbucher • 0 • updated 3.0 years ago by russhh • 4.6k
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1
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1
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Perturbed vs. Unperturbed Models
model written 3.2 years ago by ' • 170
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1.9k
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DESeq2 model matrix with interaction term
model deseq2 design interaction term rna-seq written 3.4 years ago by george.bask • 60
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1
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13k
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1
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R use models from survival analysis and do prediction
model R machine learning survival written 5.0 years ago by hdy • 100 • updated 3.5 years ago by openabstract • 0
3
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1
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702
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1
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What are the possible applications of Whole-Cell Modeling?
genome model cell biology complexity written 3.5 years ago by jcbtbs • 0 • updated 3.5 years ago by Jean-Karim Heriche ♦ 20k
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Weights for dependent variable using limma voom
model limma rna-seq regression written 4.2 years ago by lkmklsmn • 890
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1.3k
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Full version of E. coli SBML model file ?
gene pathway metabolism sbml model written 4.2 years ago by jolespin • 120
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1
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2.6k
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1
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ProtTest and PhyML
model prottest phyml lg written 4.2 years ago by Michel Edwar • 70 • updated 4.2 years ago by h.mon ♦ 26k
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4
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4
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Evolutionary distance models
model evolution distance written 4.4 years ago by samuel.zachej • 20
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2
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6 follow
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Mr. Bayes Protein Models OR How to implement prottest output in mrbayes?
mrbayes model bayesian phylogenetics prottest written 6.0 years ago by kanwalashraf07 • 30 • updated 4.7 years ago by Michael Dondrup ♦ 46k
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extract common CDS from two gff3 files (using confidence interval)
gene model comparison biopython python written 4.7 years ago by mahomarr • 0 • updated 4.7 years ago by RamRS ♦ 23k
4
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2
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7.7k
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2
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Paml - Branch-Site Models
model paml written 8.3 years ago by Kartik Sunagar • 290 • updated 4.8 years ago by bagdevi.mishra • 50
11
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3
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3.8k
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7 follow
3
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Determining Programmatically Whether Or Not A Reaction Is Reversible In Kegg (Or Metacyc)
model pathway kegg written 8.5 years ago by Michael Dondrup ♦ 46k • updated 4.9 years ago by Biostar ♦♦ 20
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2.3k
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1
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how to extract genes from GO category from a non model organism
model non go written 4.9 years ago by upendrakumar.devisetty • 350 • updated 4.9 years ago by Renesh • 1.6k
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