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Adjusting for batch effect and covariates with ComBat
combat rna-seq batch effect written 17 minutes ago by juara • 10
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Multi-group DE scRNA-seq comps without replicates
scrna-seq deseq2 seurat rna-seq written 20 minutes ago by LacquerHed • 0
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Biopython - AttributeError: when downloading from genbank
software error biopython written 1 hour ago by Wilber0x • 10 • updated 32 minutes ago by genomax ♦ 91k
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How to run DESeq2 for multiple factors
next-gen deseq2 rna-seq written 34 minutes ago by Manoj • 80
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5 follow
1
answer
R: Plotting MSMC/PSMC results using ggplot2
R ggplot msmc written 12 months ago by miles.thorburn • 110 • updated 2 hours ago by david.4.ray • 10
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EC number regular expression
perl regular expression ec enzyme catalogue written 6.2 years ago by Lee Katz • 3.0k • updated 2 hours ago by O.rka • 220
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1
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How to distinguish selection vs population demography from Tajima's D test
tajima vcf snp population genetics written 5 hours ago by nitinra • 0 • updated 2 hours ago by h.mon ♦ 31k
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1
answer
1.8k
views
1
answer
Fastqvalidator compile problem
fastqvalidator compile written 4.3 years ago by cristina_sabiers • 70 • updated 2 hours ago by Biostar ♦♦ 20
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33
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1
answer
Obtaining gene sets from KEGG or other sources
gene sets kegg gsea written 4 hours ago by jleehan • 40 • updated 3 hours ago by jared.andrews07 ♦ 7.6k
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263 follow
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News: The Biostar Handbook. A bioinformatics e-book for beginners.
tutorial news training handbook written 3.9 years ago by Istvan Albert ♦♦ 85k • updated 3 hours ago by Shalu Jhanwar • 470
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R - How to convert a sequence in a fasta file into a matrix
fasta R part_of_an_exercise sequence matrix written 8 hours ago by kbaitsi • 0
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How to look for enrichment of pathways using a list of EC numbers (enzyme)?
enrichment picrust enzyme gsea gene set written 4 hours ago by O.rka • 220
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5 follow
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FDR for multiple contrasts
fdr proteomics p.adjust written 6 hours ago by A. Domingues • 2.3k • updated 4 hours ago by dariober ♦ 11k
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how to process vcf files for GWAS analysis
vcf gwas next-gen sequencing written 1 day ago by Manoj • 80
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20
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DeepMAsED installation and dependencies
deepmased scipy tensorflow bash written 5 hours ago by v.berriosfarias • 0
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24
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SV calling with duplication amplification
sv written 5 hours ago by vctrm67 • 20
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33
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Strandness of ENCODE RNA-seq data
assembly encode rna-seq written 5 hours ago by husensofteng • 270
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32
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Gene set enrichment analysis from ChIP-seq data
R chip-seq written 5 hours ago by asmariyaz23 • 10
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37
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1
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Stringtie 2.1.4: Error running prepDE.py
stringtie written 21 hours ago by venura • 60
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17
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36 follow
17
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Tool to generate proportional Venn Diagrams?
visualization written 9.5 years ago by Ryan D • 3.3k • updated 6 hours ago by thulsen • 0
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News: Online Training: Epigenomics
news next-gen chip-seq rna-seq written 6 hours ago by carlopecoraro2 • 1.8k
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Differences between number of expressed genes obtained with RSEM and htseq-count
gene abundance htseq-count rna-seq rsem written 7 hours ago by concetta • 0
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1
answer
39
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1
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How good is the Human Protein Reference Database?
database written 7 hours ago by sakina302 • 0 • updated 7 hours ago by genomax ♦ 91k
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25
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Run Abyss2.0 for paired ended reads
assembly written 8 hours ago by taiyakisukisukijp • 0
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128
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miRNA target IDs to gene names
rna-seq written 8 weeks ago by m17 • 0 • updated 8 hours ago by Biostar ♦♦ 20
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40
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esearch error "WebEnv value not found in search output - WebEnv1 Db value not found in fetch input" though search process continues
ncbi esearch entrez genbank written 8 hours ago by rob_DNA • 0
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Picrust2: High level of description
picrust picrust2 written 9 hours ago by Claire • 0 • updated 9 hours ago by ATpoint ♦ 40k
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KEGG pathway IDs
#16srrna #pathway_analysis written 19 hours ago by mrashad • 40
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interpretation of trajectory and batch effect
trajectory monocle3 batch effect written 12 hours ago by tushard1987 • 0
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Downloading HLA typing for human
wgs neoantigen written 11 hours ago by A • 3.9k • updated 9 hours ago by ATpoint ♦ 40k
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