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VEP FASTA "toplevel" vs "primary_assembly"
fasta ensembl vep written 11 minutes ago by cocchi.e89 • 10
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Finding SNPs per gene for SNP Density in UNIX
varscan grep unix snp written 3.5 years ago by crawlthrutacos • 0 • updated 31 minutes ago by Biostar ♦♦ 20
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patients hg19 VEP Fasta and CACHE GRCh37
ensembl grch37 vep hg19 written 36 minutes ago by cocchi.e89 • 10
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gatk SelectVariants odd behavior
selectvariants gatk vcf filtering snp written 1 hour ago by jon.klonowski • 0
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DEG and low counts
rnaseq deseq2 ma plot low-counts written 2 hours ago by NielQC • 10
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How to convert vcf file to frequency file for sweepfinder2
software error written 2 hours ago by 1771012116 • 0
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error RepeatMasker Installation
perl written 4 hours ago by frida • 0 • updated 3 hours ago by genomax ♦ 65k
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Count number of monophyletic groups within pylogeny
phylogeny monophyletic written 8 hours ago by Darill • 20 • updated 3 hours ago by jrj.healey ♦ 11k
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Correlating miRNA count from DeSEQ2 with Transcript FPKM from cuffdiff
cuffdiif normalization deseq2 transcript mirna written 4 days ago by arisarkar88 • 0 • updated 4 hours ago by Kevin Blighe ♦ 41k
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R analysis for read counts using edgeR
rna-seq written 6 hours ago by Liftedkris • 0 • updated 4 hours ago by ATpoint ♦ 15k
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correct mark duplicated error using python and pysam to filter out secondary alignments
python pysam written 4 hours ago by bioguy24 • 180
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200 follow
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News: The Biostar Handbook. A bioinformatics e-book for beginners.
tutorial news training handbook written 2.4 years ago by Istvan Albert ♦♦ 80k • updated 4 hours ago by Baby Bioinformatician • 20
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fastqc of chipseq dataset - two peaks in GC content
gc content peaks chip-seq fastqc written 29 days ago by Assa Yeroslaviz • 1.2k • updated 6 hours ago by Biostar ♦♦ 20
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How should i determine outFilterMultimapNmax in rna seq analysis, P.s im working on pseudogenes.
pseudogenes star rna-seq written 14 hours ago by sabaghianamir70 • 0 • updated 7 hours ago by Kevin Blighe ♦ 41k
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6 follow
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General question about batch effect, read trimming and what to do when the adapter trimming step is not working appropriately.
trimmomatic adapters trimming rna-seq written 5 days ago by Mozart • 110
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How can I draw gating networks using the Cytoscape software for meta-analysis of GWAS data? Can anyone help me?
gene written 10 hours ago by somayeh bakhshalizadeh • 20
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Identify jumbled transcripts (scrambled exons) using HISAT2, stringtie, and GFFcompare?
stringtie rna-seq gffcompare hisat2 written 1 day ago by wolfgang.rumpf • 0 • updated 11 hours ago by danbileedg2019 • 0
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News: Training in Advanced Transcriptomics (RNASeq) Analysis @ NIH, USA
next-gen news training analysis rna-seq bioinformatics written 12 hours ago by AABI • 120
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5 follow
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how to remove pig sequences from metagenomics data
next-gen written 8 weeks ago by g.feng • 0 • updated 12 hours ago by Biostar ♦♦ 20
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What percent of reads should align to a reference gene to successfully validate it through RT-PCR?
gene rt-pcr rna-seq validation written 1 day ago by Glory Basumata • 10
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Assembler for only nanopore data
assembly genomics abyss ont written 3 days ago by ringourquia • 10 • updated 14 hours ago by harish • 180
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BCF Tools Filter on 1000Genomes Annotation
annotation bcftools vcftools filter written 17 hours ago by jon.klonowski • 0
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133
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XPEHH output file blank in SELSCAN
snp written 8 weeks ago by azizul • 0 • updated 18 hours ago by Biostar ♦♦ 20
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"high" quality RNA but poor RNAseq results
rna-seq written 21 hours ago by CrazyB • 210 • updated 19 hours ago by Charles Warden ♦ 6.6k
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How to separate chrY from a WGS vcf file?
wgs tabix dantelabs yfull bam written 20 hours ago by krt • 0
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109
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bcf convert 23andme to vcf
bcftools snp written 10 days ago by stuartkkim • 0
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63
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Exacting all the headers in a fasta file using R
R sequence written 22 hours ago by xuenanwang • 0 • updated 20 hours ago by Pierre Lindenbaum ♦ 119k
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Help a SNP newbie out
genome software error sequencing snp assembly written 20 hours ago by sarah.goldstein • 0 • updated 20 hours ago by Pierre Lindenbaum ♦ 119k
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How to find gene groups which determine the cell clusters?
gene R alignment rna-seq sequencing written 20 hours ago by Jon • 90
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PLINK vcf to binary files error: Unused command line option: --vcf
vcf plink genomics written 21 hours ago by jon.klonowski • 0 • updated 20 hours ago by chrchang523 ♦ 4.9k
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