Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : all time
all time
today
this week
this month
this year
0 results • Page
1 of 1
Sort: Rank
Rank
Views
Votes
Replies
Topic contains no posts.
No posts found.
0 results • Page
1 of 1
Recent Votes
pathway mapping of annotated genes (of bacteria)
C: what is in the fasta.fai
C: what is in the fasta.fai
A: Can'T Locate Vcf.Pm Vcftools
C: python function to kmer with windown size
A: R: How to correctly compute p-value of a k-mer?
Answer: Exctract unmapped reads from BLAST
Recent Locations •
All
France,
just now
United Kingdom,
just now
United Kingdom,
just now
Israel,
just now
Italy,
just now
Serbia,
2 minutes ago
United Kingdom,
2 minutes ago
Recent Awards •
All
Popular Question
to
Apex92
▴ 200
Scholar
to
AsoInfo
▴ 300
Popular Question
to
Gene_MMP8
▴ 210
Popular Question
to
Abhishek
• 0
Scholar
to
GenoMax
117k
Scholar
to
JACKY
▴ 10
Scholar
to
Marco Pannone
▴ 290
Recent Replies
Comment: Computing allele frequencies per individual for a set of SNPs in PLINK
by
pifferdavide
▴ 100
Thanks and yes I had tried that but failed. I used the --const-fid (converts sample IDs to within-family IDs while setting all family IDs t…
Comment: Question regarding normalization in Seurat
by
ATpoint
62k
It is the sum of counts for that cell, so basically if a given cell has a given column in the count matrix it is the colSum of that column.
Comment: Clustered, annotated dotplot to scRNA-Seq data
by
fracarb8
▴ 810
Have a look at `Clustered_DotPlot` from `scCustomize`.
Comment: Align short sequence against ONT reads
by
kirillkirilenko.tomsk
• 0
It won't work because minimap2 aligns against a large reference sequence. What I want to do is to align each read in .fastq files against s…
Comment: PCA plot for miRNA
by
struggler
• 0
Hi Abhishek, For miRNA, first I predicted novel miRNA by miRDP2 and then aligning clean reads over it to get count file. 1>made database …
Answer: Align short sequence against ONT reads
by
colindaven
★ 3.8k
Very weird question, but .... - just use the gene/exon as a reference sequence - use minimap2 to align the ONT reads against this …
Comment: how to get a sequence from read fragments with ref sequence?
by
Aaron
• 0
Thank you. Let me try.
Comment: Determine sex/ gender of a mouse cell line via sequencing data
by
Amos Bairoch
▴ 110
As I am trying to get as much information as possible on the sex of cell lines in the Cellosaurus, can you tell me which mouse cell line yo…
Comment: PCA plot for miRNA
by
Abhishek
• 0
What methods were used to quantify mRNA and miRNA from the raw fastq files ?
Comment: Sjdboverhang Option In Star
by
Thind amarinder
▴ 260
This is what I found. https://biocorecrg.github.io/RNAseq_course_2019/alnpractical.html It usually equals to the minimum read size minus 1;…
Comment: Sjdboverhang Option In Star
by
Thind amarinder
▴ 260
This is what I found. [https://biocorecrg.github.io/RNAseq_course_2019/alnpractical.html][1] It usually equals to the minimum read size min…
Comment: fineSTRUCTURE Resources
by
Juan MONROY-NIETO
• 0
try this https://www.biostars.org/p/221872/#391811
Comment: Error with TCGA package - TCGAbiolinks
by
Kevin Blighe
81k
Please post on Bioconductor Support: https://support.bioconductor.org/
Comment: Ribosomal Depletion
by
andres.firrincieli
★ 2.5k
It is easier and do his job. But if you are planning to do differential expression then follow @grant.hovhannisyan suggestion
Comment: Ribosomal Depletion
by
grant.hovhannisyan
★ 2.4k
then I recommend not bothering about removing the rRNA data during the mapping - just map all your data to the entire reference, do the cou…
Traffic: 1866 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6