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I want Blast old
ncbi blastall blast written 2 hours ago by betoven966 • 0 • updated 45 minutes ago by a.zielezinski ♦ 8.3k
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17
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is Amazon Web Services (AWS) useful?
bam rna-seq written 1 hour ago by ahadli.farid • 10
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How to perform differential gene expression analysis between two closely related organisms?
rna-seq written 1 day ago by gyulap • 20
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p vale or log2 FC to z score
rna-seq written 1 hour ago by kanwarjag • 890
3
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0
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175
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Rarefaction on R
R written 7 weeks ago by BrINClHOF • 0 • updated 2 hours ago by Biostar ♦♦ 20
361
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16
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25k
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166 follow
16
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News: The Biostar Handbook. A bioinformatics e-book for beginners.
tutorial news training handbook written 19 months ago by Istvan Albert ♦♦ 77k • updated 2 hours ago by Vijay Lakhujani ♦ 2.8k
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62
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Convert (Copy Number Variation) CNV to gene
gene genome copy number variation cnv written 4 hours ago by Saeed • 0
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1
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134
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1
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fastPHASE -F provided to estimate haplotype frequencies, but no freqs in output
bioinformatics phaseing fastphase genomics written 3 months ago by lakemonster • 10 • updated 4 hours ago by 1490784292 • 0
3
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1
answer
65
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1
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sorting a BAM file
bam sort written 6 hours ago by Bogdan • 530 • updated 5 hours ago by Philipp Bayer ♦ 5.5k
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51
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Potential Problems with BAM file header, r package input, or RNASeq data pipeline
software error glmvc bam rna-seq R written 7 hours ago by ss650012 • 0
1
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3
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92
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3
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CWL: Getting output file of a CommandLineTool using glob
common workflow language cwl written 2 days ago by skanwal • 20 • updated 7 hours ago by inutano • 0
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66
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normal sample of ovarian cancer in TCGA dataset
rna-seq written 16 hours ago by yueli7 • 20 • updated 8 hours ago by Kevin Blighe ♦ 24k
2
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1
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57
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1
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Questions regarding VST/rlog correction to plot sample distances between RNA-seq samples
R deseq rna-seq written 13 hours ago by salamandra • 130 • updated 8 hours ago by Kevin Blighe ♦ 24k
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IGV terminology questions: "inferred" insert size vs. "expected" insert size and other
next-gen written 1 day ago by wendyy11212 • 0
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1
answer
451
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1
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file "_peaks.bed" on macs2
macs2 chip-seq peakcall written 13 months ago by Brice222 • 30 • updated 8 hours ago by Biostar ♦♦ 20
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52
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Fishing nucleotide sequences from genome files given aligned protein FASTA files using biopython
gene assembly fasta written 11 hours ago by mirali1025 • 0 • updated 9 hours ago by genomax ♦ 52k
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78
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1
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Retrieve TCGA file ID and associated barcode with TCGAbiolinks: "GDC server down"
tcgabiolinks genomicdatacommons tcga written 3 days ago by user31888 • 20 • updated 10 hours ago by Kevin Blighe ♦ 24k
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49
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Tutorial: Y-DNA and mtDNA Haplogroup Predictor
tutorial haplogroup written 12 hours ago by Shicheng Guo • 5.2k
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52
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RNA-seq: Can we obtain distances between samples of different experiments?
sample clustering rna-seq written 12 hours ago by salamandra • 130
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62
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Trinity Inchworm Error - what does it mean?
rnaseq trinity inchworm error written 16 hours ago by sierraallinone • 0 • updated 12 hours ago by genomax ♦ 52k
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2
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163
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6 follow
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Inferring genotype based on RNA sequnces
rna-seq snp written 4 weeks ago by omer.k • 20 • updated 14 hours ago by igor ♦ 6.4k
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How to extract normalized matrix after using calcNormFact function (with TMM method) ? edgeR
R edger rna-seq written 1 day ago by Katerina • 0 • updated 16 hours ago by h.mon ♦ 16k
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1
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950
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1
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VCF reference and alternative allele
vcf genome genotype sequencing written 23 months ago by onemoreuser • 10 • updated 16 hours ago by waakurugu.akurugu • 0
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answers
61
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GSEA output interpretation
gene rna-seq written 1 day ago by krushnach80 • 320
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1
answer
201
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1
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RSEM calculate expression Invalid arguments, but where?
rna-seq rsem written 3 months ago by mad6kj • 0 • updated 17 hours ago by wuh19850917 • 0
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50
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Nanopore SNP and indels calling tool
snps indels tools calling nanopore written 17 hours ago by tarek.mohamed • 180
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57
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Quality Check Your Samples and Biological Replicates
rna-seq written 18 hours ago by eyonesi • 0
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1
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87
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5 follow
1
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Affymetrix Human Genome U133 Plus 2.0 Array
R written 2 days ago by sujasubramanian • 20 • updated 18 hours ago by Kevin Blighe ♦ 24k
2
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1
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341
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1
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SNP Analysis on Single Cell Data from 10x
next-gen snp rna-seq written 5 months ago by rohanverma2.2017 • 10 • updated 19 hours ago by Kevin Blighe ♦ 24k
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53
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Immunogenic signature in genesset
msigdb rnaseq immunogenic signatures written 1 day ago by archie • 50 • updated 19 hours ago by Kevin Blighe ♦ 24k
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