myvariant Posts

C: Could the batch effect be a set of numeric values in DEseq2? by Cecelia • 10
Thanks Devon. Your comments are always helpful!
C: [limma] LogFC interpretation by russhh • 3.8k
That would give you an approximation to the intensity values from the array. However, some of you...
C: [limma] LogFC interpretation by felix.lappe • 0
Thank you very much, I see my mistake. Just to be sure: If I want to retrieve the absolute expre...
C: bcftools merge: does it only merge overlapping variants or all by isabel.hostettler.14 • 10
Okay thanks. But if I do it that way it will still be present in one part of the dataset (for the...
A: [limma] LogFC interpretation by russhh • 3.8k
The data stored in `exprs` is already log-transformed. The intensities on the array will be in th...
C: bcftools merge: does it only merge overlapping variants or all by finswimmer ♦ 5.4k
Hello again, please use the `ADD REPLY` button below the post you like to reply to. I'm not awa...
A: [limma] LogFC interpretation by Devon Ryan ♦ 84k
The logFC of log2 transformed values are (approximately) the difference in the group means, which...
C: Why people are not working on gene prioritization and candidate gene selection f by Michael Dondrup ♦ 44k
That's a bit of a false premise in your head-line, because some researchers and groups are certai...
C: hisat2 warning message dunring alignment of fasta file with reference genome by shuksi1984 • 30
Header and sequence are in two separate lines.
A: bcftools merge: does it only merge overlapping variants or all by isabel.hostettler.14 • 10
Thank you very much for the answer. Is there an option to only merge the overlapping variants fro...
C: gene expression analysis using RNA seq data by maryam.akram001 • 0
yes you are right..After normalizing with DESeq2 or edgeR will i be able to apply particle swarm ...
C: Bowtie2 alignment with file.txt by genomax ♦ 55k
`-1` and `-2` options are comma separate lists of file names. Not a separate txt file like you sh...

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