myvariant Posts

C: What are the strands of structural variant breakpoints? by renny • 0
Have you been able to find an answer on this? I was wondering the same thing. I was following the...
C: Combining two rnaseq platforms in one by F • 3.2k
Sorry, what could be controls to look at variation within the datasets?
C: How can I get the sequence of 5' and 3' UTR regions of bacterial genome? by joannerandy80 • 10
Thanks.. I believe you mean by "range from the beginning of the gene..." actually "range from the...
C: How can I get the sequence of 5' and 3' UTR regions of bacterial genome? by joannerandy80 • 10
Thanks Healey. I am trying to find accessible open areas in the mRNA secondary structures of a fe...
C: error running bbduk to trim primers by caverill • 40
From the [bbduk guide][1]: there is certainly a way to do this, however I was wondering if it was...
C: error running bbduk to trim primers by caverill • 40
Wow. I knew bbduk could handle `N` characters, but I guess I've always passed on all possible com...
A: Meta_analysis of different platforms of microarray data by Kevin Blighe ♦ 35k
If the condition under study is the same in each experiment, process each experiment independentl...
C: Humbly Requesting Interviews & Responses on How to Improve Bioinformatics Softwa by jared.andrews07 • 1.8k
This is incredibly broad. Without more specific questions, you're unlikely to get any useful feed...
C: ballgown has "." as Gene Names by aditi.qamra • 250
Can you post your code here?
C: Removing UMI with UMI tools? by i.sudbery ♦ 3.0k
My bad, the search for the barcode anchors at the 5' end of the read, so you need to specify that...
C: Combining two rnaseq platforms in one by F • 3.2k
Thanks a lot Technician says library preparaion and every thing is the same only company names ...
A: how to interpret NES(normalized enrichment score)? by johnsonnathant • 20
I assume the 'NES' type abbreviation is coming from the GSEA analysis that can be commonly run vi...

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