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Is FPM the only normalisation method recommended for CircRNAs?
circrna rna-seq normalisation written 7 weeks ago by mimA • 30 • updated 7 weeks ago by Kevin Blighe ♦ 61k
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Difference of DiffBind library size normalisation vs DESeq2 library size normalisation
diffbind deseq2 chip-seq rna-seq normalisation written 9 weeks ago by bioinfouser • 70 • updated 9 weeks ago by Rory Stark • 710
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Does result data after DESeq2 analysis contain normalised counts ?
R deseq2 normalisation rna-seq written 9 weeks ago by hariprasadp.iitkgp • 0 • updated 9 weeks ago by ATpoint ♦ 36k
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Help with Salmon --> tximport --> edgeR
tximport salmon rna-seq edger normalisation written 11 weeks ago by u3005992 • 0
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How can I normalise GDC TCGA HTSeq Count data (tumour only)
htseq tcga rna-seq normalisation counts written 7 months ago by joker33 • 0 • updated 7 months ago by mahmoud.s.fahmy • 0
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Creating a score for gene-ontology representation
R scaling rna-seq normalisation written 8 months ago by n.anuragsharma • 30 • updated 7 months ago by Jean-Karim Heriche ♦ 22k
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8 follow
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Maths implications: log2 transformation before or after normalisation
log2 gene expression normalisation transformation written 8 months ago by gablenord • 10 • updated 8 months ago by Kevin Blighe ♦ 61k
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RNASeq: Normalization of sample with allele specific duplication
duplication rna-seq normalisation allele specific written 9 months ago by Ankit • 140 • updated 9 months ago by h.mon ♦ 30k
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How to normalise RNA-sequencing data that only consists of coverage for around 250 genes?
R rna-seq normalisation sequencing written 9 months ago by dwooi7417 • 0 • updated 9 months ago by Charles Warden ♦ 7.8k
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What batch correction was applied to pan-Cancer mRNA expression data?
mrna pan-cancer atlas tcga normalisation written 18 months ago by user31888 • 80 • updated 11 months ago by igor ♦ 11k
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bamCompare The best normalization for weak signal ChIP-Seq
ses chip-seq normalisation camcompare written 12 months ago by ysia2000 • 10
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Analyzing ChIP-seq without input
chip-seq normalisation written 12 months ago by Assa Yeroslaviz • 1.3k
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Applications of TPM normalisation
deseq2 rna-seq normalisation dge written 14 months ago by rmf • 940
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Normalising ChIP-seq data to RPM using a 1 or 2 count for paired-end data?
paired-end chip-seq normalisation written 5.4 years ago by James Ashmore • 2.9k • updated 17 months ago by Biostar ♦♦ 20
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Highly uneven RINs, mapping rates, and methods to deal with this (normalisation, salmon)
salmon rna-seq normalisation written 17 months ago by chris86 • 340
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Difference between microarray normalisation methods
microarray normalisation written 20 months ago by masicioglu • 0
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Normalisation of read mapping counts to account for contig length
otu metagenome normalisation read mapping written 23 months ago by valerie • 0
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Use normalised reads for HISAT2/Braker1
gene prediction braker normalisation hisat2 written 2.1 years ago by ersgupta • 0
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Normalisation of Microbiome Data for Beta Diversity Analysis
beta-diversity microbiome normalisation written 2.8 years ago by qwrissie • 0 • updated 2.7 years ago by Biostar ♦♦ 20
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How does differences in library size infuences ChIP-Seq experiments?
chip-seq library normalisation written 3.1 years ago by Assa Yeroslaviz • 1.3k • updated 3.1 years ago by Istvan Albert ♦♦ 84k
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SingleCell RNaseq normalisation
singlecell rnaseq normalisation spike_in written 3.1 years ago by nadia_boufaied • 10
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IGB normalisation of reads
rnaseq next-gen igb normalisation rna-seq written 3.4 years ago by shimbalama • 0 • updated 3.3 years ago by Mason Meyer • 110
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Normalisation of arrays with global changes expected
microarray normalisation limma written 3.4 years ago by i.sudbery ♦ 8.2k • updated 3.4 years ago by patrick.bradley • 30
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RNA-Seq data: The "right" normalisation and unit for the job
units rna-seq normalisation written 3.7 years ago by Sirio • 30 • updated 3.7 years ago by Devon Ryan ♦ 95k
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Removing GC content bias and trended bias from ChIP-seq data
csaw chip-seq edger cqn normalisation written 3.7 years ago by James Ashmore • 2.9k
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Quantile normalisation: raw rpkm or log2rpkm?
rnaseq quantile normalisation written 3.8 years ago by YaGalbi • 1.5k • updated 3.8 years ago by Michael Dondrup ♦ 47k
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normalisation method for microarray
methods microarray normalisation written 4.4 years ago by raya.girish • 20
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Filtering samples or not before normalisation for samples from several groups
filter gene expression microarray normalisation written 4.5 years ago by Zhilong Jia • 1.6k • updated 4.5 years ago by Devon Ryan ♦ 95k
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how to normalise Sangar ab1 raw trace data?
sangar base calling ab1 normalisation sequencing written 4.7 years ago by crivenster • 50 • updated 4.7 years ago by h.mon ♦ 30k
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QuasiSeq vs. DESeq2 results
deseq2 quasiseq erccdashboard normalisation written 5.1 years ago by Assa Yeroslaviz • 1.3k • updated 5.0 years ago by Biostar ♦♦ 20
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