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thank you for your answer. sorry if mine is a stupid question, as i am quite new to this, what does it mean "what is expected based on libr…
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For the MACS2 callpeak I use the following conditions:
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gget info https://github.com/pachterlab/gget
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Thank you very much. This is helpful. Now I tried implementing the code and it did give me a NameError: name 'category' not defined referri…
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`404: Error Not Found`
(Now seriously, you forgot to copy the error ;) )
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The paper you reference ([Chen *et al*. 2019](https://doi.org/10.1093/bioinformatics/btz015)) includes the following excerpt, emphasis mine…
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I know the reason now. DESeqDataSet will automatically calculate count of other bins and generat column sample in colData. Previously, I ma…
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### Issue with pypdb route
The pypdb route fails because the API pypdb access changed that it uses so that [the information no longer incl…
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Thanks - now I understood. Please see my answer.
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The following code produces the output you provided. Hope you find this code helpful.
from Bio import SeqIO
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You can use an API from SIFT and parse the JSON output, e.g., https://www.ebi.ac.uk/pdbe/api/mappings/uniprot/1kq2
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Great. So that is actually purposeful that there are no sequence ids common between the files. The idea is to add the sequence id's from bo…
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Also the sequence record in the gbk is incomplete. Please provide the full sequence record from the beginning to the end (//) or more than …
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Thank you so much for your help!
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