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4
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2
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165
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ATAC-seq macs2 peak calling bampe mode extension shift
macs peaks chip-seq atac-seq written 9 days ago by josruirod • 10 • updated 8 days ago by Ricardo D'O. Albanus • 50
7
votes
2
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103
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7 follow
2
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Peak calling using macs2?
macs2 chip-seq peaks peak-calling written 11 days ago by star • 60 • updated 11 days ago by Ram ♦ 15k
23
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4
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12k
views
4
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ATAC-seq peak calling with MACS
macs peaks chip-seq atac-seq written 21 months ago by igor ♦ 6.2k • updated 6 weeks ago by ZheFrench • 130
1
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0
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140
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0
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Bam to BigWig loss of data at MACS peaks (nothing in the BigWig why?)
chip-seq peaks bigwig bam written 9 weeks ago by contreras.xavier • 0 • updated 9 weeks ago by genomax ♦ 49k
13
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1
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2.0k
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1
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Tutorial: Visualization of ChIP-Seq peak overlaps using HOMER mergePeaks and UpSetR
R tutorial peaks chip-seq homer written 2.1 years ago by steve • 1.5k
3
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1
answer
308
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1
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Tool for finding peaks from Chip-seq data at multiple regions.
peaks chip-seq tool written 9 months ago by sangram_keshari • 30
1
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0
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470
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0
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Metrics for comparing Hi-C and ATAC-seq
hi-c peaks metrics atac-seq written 9 months ago by iMorbit • 10
5
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2
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568
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7 follow
2
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ChIP-Seq identification of peaks
histone modification peaks chip-seq written 10 months ago by TulsaPrim • 0 • updated 9 months ago by mforde84 • 1.1k
2
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1
answer
769
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1
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Difference between "peaks" and "hotspots" in Output.type of ENCODE DNase-seq data sets
encode peaks dnase-seq hotspots written 11 months ago by panyard • 10 • updated 11 months ago by Alex Reynolds ♦ 24k
1
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0
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869
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0
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MACS2 - centering peaks
macs2 peaks chip-seq centering written 12 months ago by YaGalbi • 1.3k
1
vote
2
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467
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2
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Find the highest value in an interval defined in an other file
R peaks written 14 months ago by maude • 0 • updated 13 months ago by Rashedul Islam • 220
0
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0
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704
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0
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How do I select top 100,000 non-overlapping peaks from MACS2 narrow peaks output?
peaks atac overlapping macs2 narrow written 15 months ago by YaGalbi • 1.3k • updated 13 months ago by Biostar ♦♦ 20
2
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1
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1.0k
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1
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Filter MACS peaks by enrichment/FDR?
macs peaks next-gen chip-seq sequencing written 13 months ago by ggonzalezp • 0 • updated 13 months ago by YaGalbi • 1.3k
1
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2
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542
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6 follow
2
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compare peaks in a gene list (coordinates)
gene bed peaks chip-seq written 14 months ago by Lila M • 370 • updated 14 months ago by vchris_ngs • 4.5k
1
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1
answer
412
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1
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Selecting relevant binding sites according to MACS data
macs peaks analysis written 15 months ago by robbenstijn • 0 • updated 14 months ago by le2336 • 60
3
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1
answer
503
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1
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Define unique intervals from a set of peaks
overlapping regions peaks uniq intervals written 16 months ago by fusion.slope • 150 • updated 16 months ago by Alex Reynolds ♦ 24k
4
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1
answer
707
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1
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FAIRE-seq - actively maintained peak-callers
faire-seq peaks chip-seq written 16 months ago by boczniak767 • 600 • updated 16 months ago by EagleEye • 5.3k
3
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1
answer
651
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1
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Filtering bed file
bed peaks written 18 months ago by #### • 170 • updated 18 months ago by berge2015 • 80
10
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5
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1.3k
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5
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How to visualize selected few ChIPseq peaks
macs2 peaks chip-seq written 20 months ago by Mike • 980 • updated 20 months ago by dariober ♦ 9.1k
4
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2
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1.7k
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2
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How to select top significant ChiPseq peaks from MACS2 output file
macs2 peaks chip-seq written 20 months ago by Mike • 980 • updated 20 months ago by dariober ♦ 9.1k
0
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0
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590
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0
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After Annotation in R , the binding sites are less than the starting downloaded from ENCODE Chip-seq Matrix
peaks chip-seq written 21 months ago by atsalaki • 10
2
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1
answer
1.1k
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1
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Identify Target genes of an enhancer
enhancer peaks written 23 months ago by Bioinformatist Newbie • 220 • updated 21 months ago by Giovanni M Dall'Olio ♦ 26k
9
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3
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1.2k
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3
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How can i get only the upregulated and downregulated genes from chip-seq peak files
annotation peaks chip-seq written 24 months ago by atsalaki • 10
1
vote
1
answer
691
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1
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does peak in CHIP-seq mean the sequence depth in treatment sample will be bigger than control ?
macs peaks chip-seq written 23 months ago by jimmy_zeng • 90 • updated 23 months ago by peeyushsahu • 250
1
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2
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1.2k
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2
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Threshold for calling DNAse-seq peaks ON or OFF
cutoff peaks dnase-seq roadmap written 2.2 years ago by Bioinformatist Newbie • 220 • updated 2.2 years ago by Alex Reynolds ♦ 24k
1
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0
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691
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0
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Statistically robust approach of assigning presence or absence of Histone peaks
histone peaks orthologus regions cross-species written 2.3 years ago by Saad Khan • 310
1
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1
answer
859
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1
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Chipseq peak data download
chipseq peaks written 2.5 years ago by kanwarjag • 890 • updated 2.5 years ago by Emily_Ensembl ♦ 15k
4
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1
answer
916
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1
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Plot of intergenomic distances between all bound TF sites?
peaks chip-seq written 2.6 years ago by bede.portz • 470 • updated 2.6 years ago by Alex Reynolds ♦ 24k
1
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2
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1.5k
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2
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What is the best way to plot distribution of peak heights?
R ngs peaks chip-seq annotation written 2.6 years ago by 1888 • 50
11
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1
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8.9k
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1
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What is the difference between narrow peak, Broad peak and a gapped peak of a chip-seq experiment and is it okay to use all of these regions for downstream analysis
chip-seq peaks narrow gapped broad written 2.7 years ago by Saad Khan • 310 • updated 2.7 years ago by TriS • 3.4k
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