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Calculate correlations between ChipSeq data sets
peaks chipseq macs2 correlation bedgraph written 7 months ago by Assa Yeroslaviz1.4k • updated 7 months ago by Rory Stark790
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Get MACs2 peaks associated with specific genes
macs2 peaks atac-seq written 9 months ago by ahmed.saadawi0 • updated 9 months ago by Biostar ♦♦ 20
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fastqc of chipseq dataset - two peaks in GC content
gc content peaks chip-seq fastqc written 19 months ago by Assa Yeroslaviz1.4k • updated 18 months ago by Biostar ♦♦ 20
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create a RC matrix with narrowPeak data
peaks chip-seq rcmatrix written 2.3 years ago by chavezfigueredo.alejandra0 • updated 2.2 years ago by Rory Stark790
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How to correlate chip seq peaks?
pearson peaks correlation chip seq spearman written 2.3 years ago by Zee_S60 • updated 2.3 years ago by Rory Stark790
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ATAC-seq macs2 peak calling bampe mode extension shift
macs peaks chip-seq atac-seq written 2.4 years ago by nanoide50 • updated 2.4 years ago by Ricardo A.90
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Peak calling using macs2?
macs2 chip-seq peaks peak-calling written 2.4 years ago by star260 • updated 2.4 years ago by RamRS30k
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ATAC-seq peak calling with MACS
macs peaks chip-seq atac-seq written 4.1 years ago by igor11k • updated 2.5 years ago by ZheFrench300
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Bam to BigWig loss of data at MACS peaks (nothing in the BigWig why?)
chip-seq peaks bigwig bam written 2.5 years ago by contreras.xavier0 • updated 2.5 years ago by genomax91k
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ChIP-Seq identification of peaks
histone modification peaks chip-seq written 3.2 years ago by TulsaPrim0 • updated 3.1 years ago by mforde841.3k
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MACS2 - centering peaks
macs2 peaks chip-seq centering written 3.4 years ago by YaGalbi1.5k
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Find the highest value in an interval defined in an other file
R peaks written 3.5 years ago by maude0 • updated 3.4 years ago by Rashedul Islam370
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Filter MACS peaks by enrichment/FDR?
macs peaks next-gen chip-seq sequencing written 3.5 years ago by ggonzalezp10 • updated 3.4 years ago by YaGalbi1.5k
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compare peaks in a gene list (coordinates)
gene bed peaks chip-seq written 3.5 years ago by Lila M 860 • updated 3.5 years ago by ivivek_ngs5.0k
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Selecting relevant binding sites according to MACS data
macs peaks analysis written 3.6 years ago by robbenstijn0 • updated 3.6 years ago by le233670
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Define unique intervals from a set of peaks
overlapping regions peaks uniq intervals written 3.7 years ago by fusion.slope240 • updated 3.7 years ago by Alex Reynolds31k
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FAIRE-seq - actively maintained peak-callers
faire-seq peaks chip-seq written 3.7 years ago by boczniak767690 • updated 3.7 years ago by EagleEye6.7k
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Filtering bed file
bed peaks written 3.9 years ago by ####210 • updated 3.9 years ago by berge201590
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How to visualize selected few ChIPseq peaks
macs2 peaks chip-seq written 4.0 years ago by Mike1.6k • updated 4.0 years ago by dariober11k
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