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0
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1
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create a RC matrix with narrowPeak data
peaks chip-seq rcmatrix written 9 weeks ago by chavezfigueredo.alejandra • 0 • updated 7 weeks ago by Rory Stark • 460
0
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1
answer
177
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1
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Catalogue of conserved CTCF ChIP-seq peaks/binding sites across mouse tissues?
genome peaks chip-seq written 11 weeks ago by andromeda • 0 • updated 8 weeks ago by kspata • 30
0
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1
answer
158
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1
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How to correlate chip seq peaks?
pearson peaks correlation chip seq spearman written 11 weeks ago by Zee_S • 20 • updated 9 weeks ago by Rory Stark • 460
4
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2
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417
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2
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ATAC-seq macs2 peak calling bampe mode extension shift
macs peaks chip-seq atac-seq written 3 months ago by nanoide • 10 • updated 3 months ago by Ricardo D'O. Albanus • 70
8
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2
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438
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8 follow
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Peak calling using macs2?
macs2 chip-seq peaks peak-calling written 3 months ago by star • 60 • updated 3 months ago by Ram ♦ 17k
25
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4
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13k
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4
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ATAC-seq peak calling with MACS
macs peaks chip-seq atac-seq written 2.1 years ago by igor ♦ 6.6k • updated 4 months ago by ZheFrench • 140
1
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0
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233
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0
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Bam to BigWig loss of data at MACS peaks (nothing in the BigWig why?)
chip-seq peaks bigwig bam written 5 months ago by contreras.xavier • 0 • updated 5 months ago by genomax ♦ 55k
13
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1
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2.3k
views
1
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Tutorial: Visualization of ChIP-Seq peak overlaps using HOMER mergePeaks and UpSetR
R tutorial peaks chip-seq homer written 2.3 years ago by steve • 1.7k
3
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1
answer
370
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1
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Tool for finding peaks from Chip-seq data at multiple regions.
peaks chip-seq tool written 12 months ago by sangram_keshari • 30
1
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0
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596
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0
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Metrics for comparing Hi-C and ATAC-seq
hi-c peaks metrics atac-seq written 12 months ago by iMorbit • 10
5
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2
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676
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7 follow
2
answers
ChIP-Seq identification of peaks
histone modification peaks chip-seq written 13 months ago by TulsaPrim • 0 • updated 12 months ago by mforde84 • 1.2k
2
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1
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1.0k
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1
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Difference between "peaks" and "hotspots" in Output.type of ENCODE DNase-seq data sets
encode peaks dnase-seq hotspots written 14 months ago by panyard • 10 • updated 14 months ago by Alex Reynolds ♦ 25k
1
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0
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1.0k
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MACS2 - centering peaks
macs2 peaks chip-seq centering written 15 months ago by YaGalbi • 1.3k
1
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2
answers
543
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2
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Find the highest value in an interval defined in an other file
R peaks written 17 months ago by maude • 0 • updated 16 months ago by Rashedul Islam • 290
0
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0
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842
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0
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How do I select top 100,000 non-overlapping peaks from MACS2 narrow peaks output?
peaks atac overlapping macs2 narrow written 18 months ago by YaGalbi • 1.3k • updated 16 months ago by Biostar ♦♦ 20
2
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1
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1.3k
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1
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Filter MACS peaks by enrichment/FDR?
macs peaks next-gen chip-seq sequencing written 16 months ago by ggonzalezp • 0 • updated 16 months ago by YaGalbi • 1.3k
1
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2
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618
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6 follow
2
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compare peaks in a gene list (coordinates)
gene bed peaks chip-seq written 17 months ago by Lila M • 390 • updated 17 months ago by vchris_ngs • 4.5k
1
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1
answer
483
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1
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Selecting relevant binding sites according to MACS data
macs peaks analysis written 19 months ago by robbenstijn • 0 • updated 18 months ago by le2336 • 60
3
votes
1
answer
570
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1
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Define unique intervals from a set of peaks
overlapping regions peaks uniq intervals written 19 months ago by fusion.slope • 150 • updated 19 months ago by Alex Reynolds ♦ 25k
4
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1
answer
843
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1
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FAIRE-seq - actively maintained peak-callers
faire-seq peaks chip-seq written 19 months ago by boczniak767 • 600 • updated 19 months ago by EagleEye ♦ 5.7k
3
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1
answer
774
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1
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Filtering bed file
bed peaks written 21 months ago by #### • 170 • updated 21 months ago by berge2015 • 80
10
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5
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1.6k
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5
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How to visualize selected few ChIPseq peaks
macs2 peaks chip-seq written 23 months ago by Mike • 1.0k • updated 23 months ago by dariober ♦ 9.4k
4
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2
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2.1k
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2
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How to select top significant ChiPseq peaks from MACS2 output file
macs2 peaks chip-seq written 23 months ago by Mike • 1.0k • updated 23 months ago by dariober ♦ 9.4k
0
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0
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646
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After Annotation in R , the binding sites are less than the starting downloaded from ENCODE Chip-seq Matrix
peaks chip-seq written 2.0 years ago by atsalaki • 10
2
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1
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1.2k
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1
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Identify Target genes of an enhancer
enhancer peaks written 2.2 years ago by Bioinformatist Newbie • 230 • updated 2.0 years ago by Giovanni M Dall'Olio ♦ 26k
9
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3
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1.4k
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3
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How can i get only the upregulated and downregulated genes from chip-seq peak files
annotation peaks chip-seq written 2.2 years ago by atsalaki • 10
1
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1
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759
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1
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does peak in CHIP-seq mean the sequence depth in treatment sample will be bigger than control ?
macs peaks chip-seq written 2.2 years ago by jimmy_zeng • 90 • updated 2.2 years ago by peeyushsahu • 260
1
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2
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1.3k
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2
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Threshold for calling DNAse-seq peaks ON or OFF
cutoff peaks dnase-seq roadmap written 2.5 years ago by Bioinformatist Newbie • 230 • updated 2.5 years ago by Alex Reynolds ♦ 25k
1
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0
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744
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0
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Statistically robust approach of assigning presence or absence of Histone peaks
histone peaks orthologus regions cross-species written 2.5 years ago by Saad Khan • 310
1
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1
answer
916
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1
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Chipseq peak data download
chipseq peaks written 2.8 years ago by kanwarjag • 900 • updated 2.8 years ago by Emily_Ensembl ♦ 15k
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