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After Annotation in R , the binding sites are less than the starting downloaded from ENCODE Chip-seq Matrix
peaks chip-seq written 4.1 years ago by atsalaki • 20 • updated 7 weeks ago by Biostar ♦♦ 20
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303
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5 follow
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Calculate correlations between ChipSeq data sets
peaks chipseq macs2 correlation bedgraph written 7 months ago by Assa Yeroslaviz • 1.4k • updated 7 months ago by Rory Stark • 790
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366
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Get MACs2 peaks associated with specific genes
macs2 peaks atac-seq written 9 months ago by ahmed.saadawi • 0 • updated 9 months ago by Biostar ♦♦ 20
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Difference between "peaks" and "hotspots" in Output.type of ENCODE DNase-seq data sets
encode peaks dnase-seq hotspots written 3.3 years ago by panyard • 10 • updated 9 months ago by ben.kunfang • 10
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Unsupervised clustering of super-enhancers from Chip Seq data generated from ROSE
rose super enhancers h3k27ac peaks chip-seq written 12 months ago by Researcher • 60
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197
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UCSC Genome Browser - custom track: File too large
uscs genome browser ngs peaks sequencing reads written 12 months ago by concat • 0
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341
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Downstream of Csaw differential binding region
csaw peaks chip-seq differential binding written 14 months ago by Jingyue • 30
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Tutorial: Visualization of ChIP-Seq peak overlaps using HOMER mergePeaks and UpSetR
R tutorial peaks chip-seq homer written 4.4 years ago by steve • 2.6k
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fastqc of chipseq dataset - two peaks in GC content
gc content peaks chip-seq fastqc written 19 months ago by Assa Yeroslaviz • 1.4k • updated 18 months ago by Biostar ♦♦ 20
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Is it possible to control the coordinate of the peak that HOMER takes into account to annotate?
macs2 homer peaks chip-seq annotation written 18 months ago by nanoide • 50 • updated 18 months ago by jared.andrews07 ♦ 7.5k
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create a RC matrix with narrowPeak data
peaks chip-seq rcmatrix written 2.3 years ago by chavezfigueredo.alejandra • 0 • updated 2.2 years ago by Rory Stark • 790
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Catalogue of conserved CTCF ChIP-seq peaks/binding sites across mouse tissues?
genome peaks chip-seq written 2.3 years ago by andromeda • 0 • updated 2.2 years ago by kspata • 70
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How to correlate chip seq peaks?
pearson peaks correlation chip seq spearman written 2.3 years ago by Zee_S • 60 • updated 2.3 years ago by Rory Stark • 790
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ATAC-seq macs2 peak calling bampe mode extension shift
macs peaks chip-seq atac-seq written 2.4 years ago by nanoide • 50 • updated 2.4 years ago by Ricardo A. • 90
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8 follow
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Peak calling using macs2?
macs2 chip-seq peaks peak-calling written 2.4 years ago by star • 260 • updated 2.4 years ago by RamRS ♦ 30k
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ATAC-seq peak calling with MACS
macs peaks chip-seq atac-seq written 4.1 years ago by igor ♦ 11k • updated 2.5 years ago by ZheFrench • 300
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Bam to BigWig loss of data at MACS peaks (nothing in the BigWig why?)
chip-seq peaks bigwig bam written 2.5 years ago by contreras.xavier • 0 • updated 2.5 years ago by genomax ♦ 91k
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Tool for finding peaks from Chip-seq data at multiple regions.
peaks chip-seq tool written 3.1 years ago by sangram_keshari • 240
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Metrics for comparing Hi-C and ATAC-seq
hi-c peaks metrics atac-seq written 3.1 years ago by iMorbit • 10
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7 follow
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ChIP-Seq identification of peaks
histone modification peaks chip-seq written 3.2 years ago by TulsaPrim • 0 • updated 3.1 years ago by mforde84 • 1.3k
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MACS2 - centering peaks
macs2 peaks chip-seq centering written 3.4 years ago by YaGalbi • 1.5k
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Find the highest value in an interval defined in an other file
R peaks written 3.5 years ago by maude • 0 • updated 3.4 years ago by Rashedul Islam • 370
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How do I select top 100,000 non-overlapping peaks from MACS2 narrow peaks output?
peaks atac overlapping macs2 narrow written 3.6 years ago by YaGalbi • 1.5k • updated 3.4 years ago by Biostar ♦♦ 20
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6 follow
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Filter MACS peaks by enrichment/FDR?
macs peaks next-gen chip-seq sequencing written 3.5 years ago by ggonzalezp • 10 • updated 3.4 years ago by YaGalbi • 1.5k
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6 follow
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compare peaks in a gene list (coordinates)
gene bed peaks chip-seq written 3.5 years ago by Lila M • 860 • updated 3.5 years ago by ivivek_ngs • 5.0k
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Selecting relevant binding sites according to MACS data
macs peaks analysis written 3.6 years ago by robbenstijn • 0 • updated 3.6 years ago by le2336 • 70
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Define unique intervals from a set of peaks
overlapping regions peaks uniq intervals written 3.7 years ago by fusion.slope • 240 • updated 3.7 years ago by Alex Reynolds ♦ 31k
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FAIRE-seq - actively maintained peak-callers
faire-seq peaks chip-seq written 3.7 years ago by boczniak767 • 690 • updated 3.7 years ago by EagleEye ♦ 6.7k
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1.5k
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1
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Filtering bed file
bed peaks written 3.9 years ago by #### • 210 • updated 3.9 years ago by berge2015 • 90
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5
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How to visualize selected few ChIPseq peaks
macs2 peaks chip-seq written 4.0 years ago by Mike • 1.6k • updated 4.0 years ago by dariober ♦ 11k
<prev • 43 results • page 1 of 2 • next >
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