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Unsupervised clustering of super-enhancers from Chip Seq data generated from ROSE
rose super enhancers h3k27ac peaks chip-seq written 9 weeks ago by Researcher • 50
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UCSC Genome Browser - custom track: File too large
uscs genome browser ngs peaks sequencing reads written 10 weeks ago by concat • 0
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174
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Downstream of Csaw differential binding region
csaw peaks chip-seq differential binding written 4 months ago by Jingyue • 30
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Tutorial: Visualization of ChIP-Seq peak overlaps using HOMER mergePeaks and UpSetR
R tutorial peaks chip-seq homer written 3.6 years ago by steve • 2.4k
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fastqc of chipseq dataset - two peaks in GC content
gc content peaks chip-seq fastqc written 8 months ago by Assa Yeroslaviz • 1.2k • updated 7 months ago by Biostar ♦♦ 20
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Is it possible to control the coordinate of the peak that HOMER takes into account to annotate?
macs2 homer peaks chip-seq annotation written 8 months ago by nanoide • 30 • updated 8 months ago by jared.andrews07 • 4.2k
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create a RC matrix with narrowPeak data
peaks chip-seq rcmatrix written 17 months ago by chavezfigueredo.alejandra • 0 • updated 16 months ago by Rory Stark • 550
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Catalogue of conserved CTCF ChIP-seq peaks/binding sites across mouse tissues?
genome peaks chip-seq written 17 months ago by andromeda • 0 • updated 16 months ago by kspata • 60
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How to correlate chip seq peaks?
pearson peaks correlation chip seq spearman written 17 months ago by Zee_S • 50 • updated 17 months ago by Rory Stark • 550
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ATAC-seq macs2 peak calling bampe mode extension shift
macs peaks chip-seq atac-seq written 18 months ago by nanoide • 30 • updated 18 months ago by Ricardo A. • 90
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Peak calling using macs2?
macs2 chip-seq peaks peak-calling written 18 months ago by star • 190 • updated 18 months ago by RamRS ♦ 25k
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ATAC-seq peak calling with MACS
macs peaks chip-seq atac-seq written 3.3 years ago by igor ♦ 8.9k • updated 19 months ago by ZheFrench • 270
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Bam to BigWig loss of data at MACS peaks (nothing in the BigWig why?)
chip-seq peaks bigwig bam written 20 months ago by contreras.xavier • 0 • updated 20 months ago by genomax ♦ 75k
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Tool for finding peaks from Chip-seq data at multiple regions.
peaks chip-seq tool written 2.2 years ago by sangram_keshari • 230
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Metrics for comparing Hi-C and ATAC-seq
hi-c peaks metrics atac-seq written 2.3 years ago by iMorbit • 10
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7 follow
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ChIP-Seq identification of peaks
histone modification peaks chip-seq written 2.3 years ago by TulsaPrim • 0 • updated 2.3 years ago by mforde84 • 1.2k
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Difference between "peaks" and "hotspots" in Output.type of ENCODE DNase-seq data sets
encode peaks dnase-seq hotspots written 2.4 years ago by panyard • 10 • updated 2.4 years ago by Alex Reynolds ♦ 29k
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MACS2 - centering peaks
macs2 peaks chip-seq centering written 2.5 years ago by YaGalbi • 1.4k
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Find the highest value in an interval defined in an other file
R peaks written 2.7 years ago by maude • 0 • updated 2.6 years ago by Rashedul Islam • 340
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How do I select top 100,000 non-overlapping peaks from MACS2 narrow peaks output?
peaks atac overlapping macs2 narrow written 2.8 years ago by YaGalbi • 1.4k • updated 2.6 years ago by Biostar ♦♦ 20
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6 follow
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Filter MACS peaks by enrichment/FDR?
macs peaks next-gen chip-seq sequencing written 2.6 years ago by ggonzalezp • 10 • updated 2.6 years ago by YaGalbi • 1.4k
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6 follow
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compare peaks in a gene list (coordinates)
gene bed peaks chip-seq written 2.7 years ago by Lila M • 800 • updated 2.7 years ago by ivivek_ngs • 4.8k
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Selecting relevant binding sites according to MACS data
macs peaks analysis written 2.8 years ago by robbenstijn • 0 • updated 2.7 years ago by le2336 • 70
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Define unique intervals from a set of peaks
overlapping regions peaks uniq intervals written 2.8 years ago by fusion.slope • 200 • updated 2.8 years ago by Alex Reynolds ♦ 29k
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FAIRE-seq - actively maintained peak-callers
faire-seq peaks chip-seq written 2.9 years ago by boczniak767 • 680 • updated 2.9 years ago by EagleEye ♦ 6.5k
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Filtering bed file
bed peaks written 3.0 years ago by #### • 190 • updated 3.0 years ago by berge2015 • 90
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How to visualize selected few ChIPseq peaks
macs2 peaks chip-seq written 3.2 years ago by Mike • 1.4k • updated 3.2 years ago by dariober ♦ 10k
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How to select top significant ChiPseq peaks from MACS2 output file
macs2 peaks chip-seq written 3.2 years ago by Mike • 1.4k • updated 3.2 years ago by dariober ♦ 10k
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After Annotation in R , the binding sites are less than the starting downloaded from ENCODE Chip-seq Matrix
peaks chip-seq written 3.2 years ago by atsalaki • 10
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Identify Target genes of an enhancer
enhancer peaks written 3.4 years ago by Bioinformatist Newbie • 240 • updated 3.3 years ago by Giovanni M Dall'Olio ♦ 26k
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