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0
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233
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create a RC matrix with narrowPeak data
peaks chip-seq rcmatrix written 5 months ago by chavezfigueredo.alejandra • 0 • updated 4 months ago by Rory Stark • 480
0
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1
answer
233
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1
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Catalogue of conserved CTCF ChIP-seq peaks/binding sites across mouse tissues?
genome peaks chip-seq written 5 months ago by andromeda • 0 • updated 4 months ago by kspata • 40
0
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1
answer
253
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1
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How to correlate chip seq peaks?
pearson peaks correlation chip seq spearman written 5 months ago by Zee_S • 20 • updated 5 months ago by Rory Stark • 480
4
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2
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683
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2
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ATAC-seq macs2 peak calling bampe mode extension shift
macs peaks chip-seq atac-seq written 6 months ago by nanoide • 10 • updated 6 months ago by Ricardo A. • 80
8
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2
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654
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8 follow
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Peak calling using macs2?
macs2 chip-seq peaks peak-calling written 6 months ago by star • 70 • updated 6 months ago by RamRS ♦ 19k
25
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4
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15k
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4
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ATAC-seq peak calling with MACS
macs peaks chip-seq atac-seq written 2.3 years ago by igor ♦ 7.1k • updated 7 months ago by ZheFrench • 150
1
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0
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284
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Bam to BigWig loss of data at MACS peaks (nothing in the BigWig why?)
chip-seq peaks bigwig bam written 8 months ago by contreras.xavier • 0 • updated 8 months ago by genomax ♦ 59k
13
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1
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2.4k
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1
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Tutorial: Visualization of ChIP-Seq peak overlaps using HOMER mergePeaks and UpSetR
R tutorial peaks chip-seq homer written 2.6 years ago by steve • 1.8k
3
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1
answer
411
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1
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Tool for finding peaks from Chip-seq data at multiple regions.
peaks chip-seq tool written 15 months ago by sangram_keshari • 120
1
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0
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706
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0
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Metrics for comparing Hi-C and ATAC-seq
hi-c peaks metrics atac-seq written 15 months ago by iMorbit • 10
5
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2
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763
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7 follow
2
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ChIP-Seq identification of peaks
histone modification peaks chip-seq written 16 months ago by TulsaPrim • 0 • updated 15 months ago by mforde84 • 1.2k
2
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1
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1.2k
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1
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Difference between "peaks" and "hotspots" in Output.type of ENCODE DNase-seq data sets
encode peaks dnase-seq hotspots written 17 months ago by panyard • 10 • updated 17 months ago by Alex Reynolds ♦ 26k
1
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1.2k
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0
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MACS2 - centering peaks
macs2 peaks chip-seq centering written 18 months ago by YaGalbi • 1.4k
1
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2
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609
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2
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Find the highest value in an interval defined in an other file
R peaks written 20 months ago by maude • 0 • updated 19 months ago by Rashedul Islam • 290
0
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0
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966
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0
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How do I select top 100,000 non-overlapping peaks from MACS2 narrow peaks output?
peaks atac overlapping macs2 narrow written 21 months ago by YaGalbi • 1.4k • updated 19 months ago by Biostar ♦♦ 20
2
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1
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1.6k
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1
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Filter MACS peaks by enrichment/FDR?
macs peaks next-gen chip-seq sequencing written 19 months ago by ggonzalezp • 0 • updated 19 months ago by YaGalbi • 1.4k
1
vote
2
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726
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6 follow
2
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compare peaks in a gene list (coordinates)
gene bed peaks chip-seq written 20 months ago by Lila M • 410 • updated 20 months ago by vchris_ngs • 4.6k
1
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1
answer
516
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1
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Selecting relevant binding sites according to MACS data
macs peaks analysis written 21 months ago by robbenstijn • 0 • updated 20 months ago by le2336 • 60
3
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1
answer
648
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1
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Define unique intervals from a set of peaks
overlapping regions peaks uniq intervals written 22 months ago by fusion.slope • 200 • updated 22 months ago by Alex Reynolds ♦ 26k
4
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1
answer
914
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1
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FAIRE-seq - actively maintained peak-callers
faire-seq peaks chip-seq written 22 months ago by boczniak767 • 620 • updated 22 months ago by EagleEye ♦ 6.0k
3
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1
answer
872
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1
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Filtering bed file
bed peaks written 2.0 years ago by #### • 170 • updated 2.0 years ago by berge2015 • 80
10
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5
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1.8k
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5
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How to visualize selected few ChIPseq peaks
macs2 peaks chip-seq written 2.2 years ago by Mike • 1.1k • updated 2.2 years ago by dariober ♦ 9.7k
4
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2
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2.4k
views
2
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How to select top significant ChiPseq peaks from MACS2 output file
macs2 peaks chip-seq written 2.2 years ago by Mike • 1.1k • updated 2.2 years ago by dariober ♦ 9.7k
0
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0
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680
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0
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After Annotation in R , the binding sites are less than the starting downloaded from ENCODE Chip-seq Matrix
peaks chip-seq written 2.2 years ago by atsalaki • 10
2
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1
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1.3k
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1
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Identify Target genes of an enhancer
enhancer peaks written 2.4 years ago by Bioinformatist Newbie • 230 • updated 2.3 years ago by Giovanni M Dall'Olio ♦ 26k
9
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3
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1.5k
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3
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How can i get only the upregulated and downregulated genes from chip-seq peak files
annotation peaks chip-seq written 2.5 years ago by atsalaki • 10
1
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1
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799
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1
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does peak in CHIP-seq mean the sequence depth in treatment sample will be bigger than control ?
macs peaks chip-seq written 2.5 years ago by jimmy_zeng • 90 • updated 2.5 years ago by peeyushsahu • 250
1
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2
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1.4k
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2
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Threshold for calling DNAse-seq peaks ON or OFF
cutoff peaks dnase-seq roadmap written 2.7 years ago by Bioinformatist Newbie • 230 • updated 2.7 years ago by Alex Reynolds ♦ 26k
1
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0
answers
781
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0
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Statistically robust approach of assigning presence or absence of Histone peaks
histone peaks orthologus regions cross-species written 2.8 years ago by Saad Khan • 310
1
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1
answer
960
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1
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Chipseq peak data download
chipseq peaks written 3.0 years ago by kanwarjag • 910 • updated 3.0 years ago by Emily_Ensembl ♦ 16k
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