Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing: peaks • reset
or   Classic search
<prev • 37 results • page 1 of 2 • next >
2
votes
0
answers
71
views
0
answers
fastqc of chipseq dataset - two peaks in GC content
gc content peaks chip-seq fastqc written 4 days ago by Assa Yeroslaviz • 1.2k
0
votes
1
answer
315
views
1
answer
create a RC matrix with narrowPeak data
peaks chip-seq rcmatrix written 8 months ago by chavezfigueredo.alejandra • 0 • updated 8 months ago by Rory Stark • 500
0
votes
1
answer
342
views
1
answer
Catalogue of conserved CTCF ChIP-seq peaks/binding sites across mouse tissues?
genome peaks chip-seq written 8 months ago by andromeda • 0 • updated 8 months ago by kspata • 40
1
vote
1
answer
379
views
1
answer
How to correlate chip seq peaks?
pearson peaks correlation chip seq spearman written 8 months ago by Zee_S • 20 • updated 8 months ago by Rory Stark • 500
4
votes
2
answers
1.1k
views
2
answers
ATAC-seq macs2 peak calling bampe mode extension shift
macs peaks chip-seq atac-seq written 9 months ago by nanoide • 30 • updated 9 months ago by Ricardo A. • 90
8
votes
2
answers
830
views
8 follow
2
answers
Peak calling using macs2?
macs2 chip-seq peaks peak-calling written 9 months ago by star • 130 • updated 9 months ago by RamRS ♦ 20k
29
votes
3
answers
16k
views
3
answers
ATAC-seq peak calling with MACS
macs peaks chip-seq atac-seq written 2.6 years ago by igor ♦ 7.4k • updated 10 months ago by ZheFrench • 210
1
vote
0
answers
346
views
0
answers
Bam to BigWig loss of data at MACS peaks (nothing in the BigWig why?)
chip-seq peaks bigwig bam written 11 months ago by contreras.xavier • 0 • updated 11 months ago by genomax ♦ 64k
13
votes
1
answer
2.6k
views
1
answer
Tutorial: Visualization of ChIP-Seq peak overlaps using HOMER mergePeaks and UpSetR
R tutorial peaks chip-seq homer written 2.9 years ago by steve • 1.9k
3
votes
1
answer
462
views
1
answer
Tool for finding peaks from Chip-seq data at multiple regions.
peaks chip-seq tool written 18 months ago by sangram_keshari • 130
1
vote
0
answers
827
views
0
answers
Metrics for comparing Hi-C and ATAC-seq
hi-c peaks metrics atac-seq written 18 months ago by iMorbit • 10
5
votes
2
answers
890
views
7 follow
2
answers
ChIP-Seq identification of peaks
histone modification peaks chip-seq written 19 months ago by TulsaPrim • 0 • updated 19 months ago by mforde84 • 1.2k
2
votes
1
answer
1.4k
views
1
answer
Difference between "peaks" and "hotspots" in Output.type of ENCODE DNase-seq data sets
encode peaks dnase-seq hotspots written 20 months ago by panyard • 10 • updated 20 months ago by Alex Reynolds ♦ 27k
1
vote
0
answers
1.3k
views
0
answers
MACS2 - centering peaks
macs2 peaks chip-seq centering written 21 months ago by YaGalbi • 1.4k
1
vote
2
answers
676
views
2
answers
Find the highest value in an interval defined in an other file
R peaks written 24 months ago by maude • 0 • updated 22 months ago by Rashedul Islam • 290
0
votes
0
answers
1.1k
views
0
answers
How do I select top 100,000 non-overlapping peaks from MACS2 narrow peaks output?
peaks atac overlapping macs2 narrow written 2.0 years ago by YaGalbi • 1.4k • updated 22 months ago by Biostar ♦♦ 20
2
votes
1
answer
1.9k
views
1
answer
Filter MACS peaks by enrichment/FDR?
macs peaks next-gen chip-seq sequencing written 22 months ago by ggonzalezp • 0 • updated 22 months ago by YaGalbi • 1.4k
1
vote
2
answers
826
views
6 follow
2
answers
compare peaks in a gene list (coordinates)
gene bed peaks chip-seq written 23 months ago by Lila M • 460 • updated 23 months ago by ivivek_ngs • 4.7k
1
vote
1
answer
557
views
1
answer
Selecting relevant binding sites according to MACS data
macs peaks analysis written 2.1 years ago by robbenstijn • 0 • updated 24 months ago by le2336 • 60
3
votes
1
answer
719
views
1
answer
Define unique intervals from a set of peaks
overlapping regions peaks uniq intervals written 2.1 years ago by fusion.slope • 200 • updated 2.1 years ago by Alex Reynolds ♦ 27k
4
votes
1
answer
1.0k
views
1
answer
FAIRE-seq - actively maintained peak-callers
faire-seq peaks chip-seq written 2.1 years ago by boczniak767 • 630 • updated 2.1 years ago by EagleEye ♦ 6.2k
3
votes
1
answer
982
views
1
answer
Filtering bed file
bed peaks written 2.3 years ago by #### • 180 • updated 2.3 years ago by berge2015 • 80
10
votes
5
answers
2.1k
views
5
answers
How to visualize selected few ChIPseq peaks
macs2 peaks chip-seq written 2.4 years ago by Mike • 1.2k • updated 2.4 years ago by dariober ♦ 9.9k
4
votes
2
answers
2.7k
views
2
answers
How to select top significant ChiPseq peaks from MACS2 output file
macs2 peaks chip-seq written 2.5 years ago by Mike • 1.2k • updated 2.5 years ago by dariober ♦ 9.9k
0
votes
0
answers
722
views
0
answers
After Annotation in R , the binding sites are less than the starting downloaded from ENCODE Chip-seq Matrix
peaks chip-seq written 2.5 years ago by atsalaki • 10
2
votes
1
answer
1.5k
views
1
answer
Identify Target genes of an enhancer
enhancer peaks written 2.7 years ago by Bioinformatist Newbie • 230 • updated 2.6 years ago by Giovanni M Dall'Olio ♦ 26k
9
votes
3
answers
1.6k
views
3
answers
How can i get only the upregulated and downregulated genes from chip-seq peak files
annotation peaks chip-seq written 2.7 years ago by atsalaki • 10
1
vote
1
answer
870
views
1
answer
does peak in CHIP-seq mean the sequence depth in treatment sample will be bigger than control ?
macs peaks chip-seq written 2.7 years ago by jimmy_zeng • 90 • updated 2.7 years ago by SP • 250
1
vote
2
answers
1.5k
views
2
answers
Threshold for calling DNAse-seq peaks ON or OFF
cutoff peaks dnase-seq roadmap written 3.0 years ago by Bioinformatist Newbie • 230 • updated 3.0 years ago by Alex Reynolds ♦ 27k
1
vote
0
answers
827
views
0
answers
Statistically robust approach of assigning presence or absence of Histone peaks
histone peaks orthologus regions cross-species written 3.0 years ago by Saad Khan • 330
<prev • 37 results • page 1 of 2 • next >
Recent Votes
Recent Locations • All »
  • United States, 5 minutes ago
  • Brazil, 6 minutes ago
  • CIMMYT, Mexico, 7 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1883 users visited in the last hour