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<prev • 58 results • page 1 of 2 • next >
9
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Hapmap 3 in hg19/GRCh37 plink format PED and MAP
hapmap 3 hg18 map ped hg19 written 10 months ago by Shicheng Guo • 7.4k
9
votes
1
answer
21k
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1
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Convert VCFf file to plink ped/map format while filtering the SNPs
plink map ped vcftools written 4.4 years ago by roll • 240 • updated 3 months ago by zx8754 ♦ 6.5k
29
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2
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584
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8 follow
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Perl/Python script: phased vcf to phased tped
vcf ped phased written 3 months ago by Shicheng Guo • 7.4k
0
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0
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149
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0
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how to deal with 0 in allele from ped/map files
plink ped map written 3 months ago by Victor • 10
4
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0
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653
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0
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How to convert txt or csv files into ped files?
R plink ped python written 7 months ago by sjunlee89 • 0 • updated 4 months ago by zx8754 ♦ 6.5k
8
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1
answer
2.5k
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1
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Impute: File Formats ?
linkage haplotype ped written 8.6 years ago by Pierre Lindenbaum ♦ 116k • updated 5 months ago by RamRS ♦ 20k
0
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0
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227
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make ped file from SNPChip final_report
snp plink ped written 6 months ago by mary • 200 • updated 6 months ago by Biostar ♦♦ 20
0
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0
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309
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0
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make ped file
ped written 7 months ago by keivanrz • 0 • updated 7 months ago by Pierre Lindenbaum ♦ 116k
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2
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6 follow
2
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How To Convert .Ped To .Vcf File
vcf convert ped written 6.7 years ago by cbm • 20 • updated 9 months ago by Kevin Blighe ♦ 37k
1
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1
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6.4k
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1
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Remove Duplicate Individuals From Plink Ped File Using Plink
gwas plink ped genotype written 5.1 years ago by venkateshr89 • 690 • updated 11 months ago by Vale • 0
2
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1
answer
1.0k
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1
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Using snpStats to read a pedfile, object 'm' not found
R plink ped written 2.3 years ago by nadrianam • 30 • updated 12 months ago by Kevin Blighe ♦ 37k
1
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1
answer
2.9k
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1
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Reading a .ped file in R?
R plink ped written 2.3 years ago by nadrianam • 30 • updated 12 months ago by fatmasayed93 • 0
0
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1
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428
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1
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How unphased VCF is converted into ped file?
vcf ddrad phaseing freebayes ped written 12 months ago by jingjin2203 • 0 • updated 12 months ago by Kevin Blighe ♦ 37k
0
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1
answer
909
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1
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PLINK2 recode ped flag issue
vcf plink2 plink ped written 16 months ago by emyli • 0 • updated 16 months ago by tarek.mohamed • 230
0
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0
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751
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0
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Is it possible to convert back to .ped from .raw (made with plink)?
R raw plink ped written 17 months ago by meri.kaustio • 0
0
votes
1
answer
757
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1
answer
illumina genotype reports _lgen to ped using plink
ped lgen illumina genotype report plink written 17 months ago by tarek.mohamed • 230 • updated 17 months ago by chrchang523 ♦ 4.6k
1
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1
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1.9k
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1
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Fail to open file in plink
ped open file written 18 months ago by janhuang.cn • 120 • updated 18 months ago by RamRS ♦ 20k
0
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0
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682
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How to compare genotype calls of the SNPS on chrom X for the GWAS samples between plink file vs Affymetrix genotype output file?
gwas affymetrix plink ped genotype written 19 months ago by bioinforesearchquestions • 200 • updated 19 months ago by Biostar ♦♦ 20
2
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3
answers
6.7k
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3
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Vcftools Can'T Create Ped Map File Due To Ulimit Of Allowed Open Files.
vcf vcftools ped plink written 6.7 years ago by Kevin • 600 • updated 23 months ago by a.molkenov • 0
1
vote
1
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988
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1
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Is there a way to tell PLINK and VCFtools to sort the samples in a particular order?
bed vcftools plink ped sort written 2.1 years ago by beausoleilmo • 230 • updated 2.1 years ago by chrchang523 ♦ 4.6k
0
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1
answer
742
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1
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Latest release of '1000 genomes data'
vcf 1000 genomes data map ped written 2.1 years ago by tesfadej2003 • 10
0
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1
answer
1.3k
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1
answer
plink PED file - randomly select allele at heterozygous site and convert to homozygous
ped adna plink snp genotype written 3.1 years ago by stolarek.ir • 570 • updated 2.2 years ago by zf1992lss • 0
0
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3.1k
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How to convert txt file to ped and map using plink
map plink ped txt written 2.2 years ago by BlackHole • 0
0
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0
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831
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0
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Question: Error converting MAP/PED to GEN in Gtools
gen gtools map ped written 2.3 years ago by sultan.chaudhury • 0
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0
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1.3k
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0
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Compare genotypes from sequencing (vcf) and microarrays (ped)
vcf snp ped sequencing written 2.5 years ago by w0nderingatwork • 40
4
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1
answer
1.7k
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1
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how to add pedigree info into VCF
vcf pedigree ped written 2.9 years ago by CrazyB • 200 • updated 2.9 years ago by RamRS ♦ 20k
3
votes
1
answer
956
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1
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convert plink to weka
weka plink ped map written 3.1 years ago by marwa.cs91 • 20
2
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1
answer
1.3k
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1
answer
Can PLINK handle gzipped ped / map files?
plink ped written 3.1 years ago by Juan Manuel Berros • 80 • updated 3.1 years ago by chrchang523 ♦ 4.6k
0
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1
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1.3k
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1
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How to handle missing values using Expectation Maximization
expectation maximization plink ped map written 3.2 years ago by marwa.cs91 • 20 • updated 3.2 years ago by Jean-Karim Heriche ♦ 18k
2
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1
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2.0k
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1
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Pedigree file information
pedigree plink ped .ped written 3.3 years ago by Mani • 20 • updated 3.3 years ago by Pierre Lindenbaum ♦ 116k
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