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<prev • 61 results • page 1 of 3 • next >
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Calculating Kappa value between two SNP matrices in R
kappa gwas snp ped R written 4 weeks ago by elite420 • 0
11
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1
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1.4k
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8 follow
1
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Hapmap 3 in hg19/GRCh37 plink format PED and MAP
hapmap 3 hg18 map ped hg19 written 14 months ago by Shicheng Guo • 7.5k • updated 5 weeks ago by melissawongukm • 10
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1
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2.5k
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1
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Simple Question About .Ped Format For Gatk And Plink
exome gatk plink ped written 6.4 years ago by el2622 • 0 • updated 5 weeks ago by Biostar ♦♦ 20
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78
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DGRP data set
mapfile bimfile ped dgrp written 10 weeks ago by mvanligten14 • 0
3
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1
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284
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1
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How can I convert .ped file to bed+bim+fam file using plink 1.9?
gene snp next-gen plink ped written 12 weeks ago by sofie_carolina • 20 • updated 12 weeks ago by genomax ♦ 68k
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Convert VCFf file to plink ped/map format while filtering the SNPs
plink map ped vcftools written 4.7 years ago by roll • 280 • updated 3 months ago by hakimeazarafra • 0
3
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1
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2.6k
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1
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Fail to open file in plink
plink ped written 22 months ago by janhuang.cn • 150 • updated 4 months ago by zx8754 ♦ 7.5k
29
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2
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698
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8 follow
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Perl/Python script: phased vcf to phased tped
vcf ped phased written 7 months ago by Shicheng Guo • 7.5k
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227
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how to deal with 0 in allele from ped/map files
plink ped map written 7 months ago by Victor • 10
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1.1k
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How to convert txt or csv files into ped files?
R plink ped python written 11 months ago by sjunlee89 • 0 • updated 8 months ago by zx8754 ♦ 7.5k
8
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1
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2.7k
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1
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Impute: File Formats ?
linkage haplotype ped written 8.9 years ago by Pierre Lindenbaum ♦ 120k • updated 9 months ago by RamRS ♦ 22k
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312
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make ped file from SNPChip final_report
snp plink ped written 11 months ago by mary • 200 • updated 10 months ago by Biostar ♦♦ 20
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make ped file
ped written 11 months ago by keivanrz • 0 • updated 11 months ago by Pierre Lindenbaum ♦ 120k
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6 follow
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How To Convert .Ped To .Vcf File
vcf convert ped written 7.0 years ago by cbm • 20 • updated 13 months ago by Kevin Blighe ♦ 44k
1
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1
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6.9k
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1
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Remove Duplicate Individuals From Plink Ped File Using Plink
gwas plink ped genotype written 5.4 years ago by venkateshr89 • 690 • updated 15 months ago by Vale • 0
2
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1
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1.2k
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1
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Using snpStats to read a pedfile, object 'm' not found
R plink ped written 2.6 years ago by nadrianam • 30 • updated 16 months ago by Kevin Blighe ♦ 44k
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1
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3.4k
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1
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Reading a .ped file in R?
R plink ped written 2.6 years ago by nadrianam • 30 • updated 16 months ago by fatmasayed93 • 0
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1
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514
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1
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How unphased VCF is converted into ped file?
vcf ddrad phaseing freebayes ped written 16 months ago by jingjin2203 • 30 • updated 16 months ago by Kevin Blighe ♦ 44k
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1
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1.1k
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1
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PLINK2 recode ped flag issue
vcf plink2 plink ped written 20 months ago by emyli • 10 • updated 20 months ago by tarek.mohamed • 250
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880
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Is it possible to convert back to .ped from .raw (made with plink)?
R raw plink ped written 21 months ago by meri.kaustio • 0
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1
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901
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1
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illumina genotype reports _lgen to ped using plink
ped lgen illumina genotype report plink written 21 months ago by tarek.mohamed • 250 • updated 21 months ago by chrchang523 ♦ 5.2k
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784
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How to compare genotype calls of the SNPS on chrom X for the GWAS samples between plink file vs Affymetrix genotype output file?
gwas affymetrix plink ped genotype written 23 months ago by bioinforesearchquestions • 230 • updated 23 months ago by Biostar ♦♦ 20
2
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3
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7.1k
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3
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Vcftools Can'T Create Ped Map File Due To Ulimit Of Allowed Open Files.
vcf vcftools ped plink written 7.1 years ago by Kevin • 630 • updated 2.3 years ago by a.molkenov • 0
1
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1
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1.1k
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1
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Is there a way to tell PLINK and VCFtools to sort the samples in a particular order?
bed vcftools plink ped sort written 2.4 years ago by beausoleilmo • 230 • updated 2.4 years ago by chrchang523 ♦ 5.2k
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1
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836
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1
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Latest release of '1000 genomes data'
vcf 1000 genomes data map ped written 2.4 years ago by tesfadej2003 • 10
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1
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1.4k
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1
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plink PED file - randomly select allele at heterozygous site and convert to homozygous
ped adna plink snp genotype written 3.4 years ago by stolarek.ir • 580 • updated 2.5 years ago by zf1992lss • 0
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How to convert txt file to ped and map using plink
map plink ped txt written 2.5 years ago by BlackHole • 0
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0
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943
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Question: Error converting MAP/PED to GEN in Gtools
gen gtools map ped written 2.6 years ago by sultan.chaudhury • 0
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1.4k
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0
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Compare genotypes from sequencing (vcf) and microarrays (ped)
vcf snp ped sequencing written 2.9 years ago by w0nderingatwork • 40
4
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1
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1.9k
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1
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how to add pedigree info into VCF
vcf pedigree ped written 3.2 years ago by CrazyB • 210 • updated 3.2 years ago by RamRS ♦ 22k
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