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2
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86
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Problems awking columns from map file
ped awk map convertf unix written 24 days ago by Nuthatch • 0 • updated 24 days ago by Bastien Hervé ♦ 4.8k
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0
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101
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0
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How to extract a subset of samples from plink .bed files
bed plink ped written 4 weeks ago by eyb • 190
3
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2
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165
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2
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How to check if a word is present in a column of a .ped file
ped bash written 8 weeks ago by Nuthatch • 0 • updated 8 weeks ago by chrchang523 ♦ 7.3k
1
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0
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112
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0
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Problems removing a subset of individuals from ped files
remove plink ped written 8 weeks ago by Nuthatch • 0
11
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1
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2.5k
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8 follow
1
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Hapmap3 in hg19/GRCh37 plink format PED and MAP
hapmap 3 hg18 map ped hg19 written 2.6 years ago by Shicheng Guo • 8.4k
7
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2
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5 follow
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Plink Raw Format To Ped Format
snps plink ped written 7.0 years ago by kapoor.manav • 40 • updated 13 months ago by klkeysb • 10
0
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0
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293
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0
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Calculating Kappa value between two SNP matrices in R
kappa gwas snp ped R written 17 months ago by elite420 • 0
6
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1
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2.9k
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1
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Simple Question About .Ped Format For Gatk And Plink
exome gatk plink ped written 7.8 years ago by el2622 • 0 • updated 17 months ago by Biostar ♦♦ 20
0
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0
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238
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0
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DGRP data set
mapfile bimfile ped dgrp written 18 months ago by mvanligten14 • 0
3
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1
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2.3k
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1
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How can I convert .ped file to bed+bim+fam file using plink 1.9?
gene snp next-gen plink ped written 19 months ago by sofie_carolina • 20 • updated 19 months ago by genomax ♦ 91k
16
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2
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31k
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6 follow
2
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Convert VCFf file to plink ped/map format while filtering the SNPs
plink map ped vcftools written 6.1 years ago by roll • 330 • updated 20 months ago by hakimeazarafra • 0
4
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1
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5.0k
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1
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Fail to open file in plink
plink ped written 3.2 years ago by janhuang.cn • 150 • updated 20 months ago by zx8754 ♦ 9.7k
29
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2
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1.1k
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8 follow
2
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Perl/Python script: phased vcf to phased tped
vcf ped phased written 23 months ago by Shicheng Guo • 8.4k
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0
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467
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0
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how to deal with 0 in allele from ped/map files
plink ped map written 24 months ago by Victor • 10
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3.1k
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0
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How to convert txt or csv files into ped files?
R plink ped python written 2.2 years ago by sjunlee89 • 0 • updated 2.1 years ago by zx8754 ♦ 9.7k
8
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1
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3.4k
views
1
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Impute: File Formats ?
linkage haplotype ped written 10.2 years ago by Pierre Lindenbaum ♦ 131k • updated 2.1 years ago by RamRS ♦ 30k
0
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0
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690
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0
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make ped file from SNPChip final_report
snp plink ped written 2.2 years ago by mary • 210 • updated 2.2 years ago by Biostar ♦♦ 20
0
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0
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906
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0
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make ped file
ped written 2.3 years ago by keivanrz • 0 • updated 2.3 years ago by Pierre Lindenbaum ♦ 131k
8
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2
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13k
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7 follow
2
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How To Convert .Ped To .Vcf File
vcf convert ped written 8.3 years ago by cbm • 20 • updated 2.4 years ago by regmkbl ♦ 66k
1
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1
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8.2k
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1
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Remove Duplicate Individuals From Plink Ped File Using Plink
gwas plink ped genotype written 6.8 years ago by venks • 710 • updated 2.6 years ago by Ginevra • 0
2
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1
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1.7k
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1
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Using snpStats to read a pedfile, object 'm' not found
R plink ped written 4.0 years ago by nadrianam • 40 • updated 2.7 years ago by regmkbl ♦ 66k
2
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1
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5.2k
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1
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Reading a .ped file in R?
R plink ped written 4.0 years ago by nadrianam • 40 • updated 2.7 years ago by fatmasayed93 • 0
0
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1
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762
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1
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How unphased VCF is converted into ped file?
vcf ddrad phaseing freebayes ped written 2.7 years ago by jingjin2203 • 40 • updated 2.7 years ago by regmkbl ♦ 66k
0
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1
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1.8k
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1
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PLINK2 recode ped flag issue
vcf plink2 plink ped written 3.0 years ago by emyli • 10 • updated 3.0 years ago by tarek.mohamed • 270
0
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0
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1.4k
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0
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Is it possible to convert back to .ped from .raw (made with plink)?
R raw plink ped written 3.1 years ago by meri.kaustio • 0
0
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1
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1.4k
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1
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illumina genotype reports _lgen to ped using plink
ped lgen illumina genotype report plink written 3.1 years ago by tarek.mohamed • 270 • updated 3.1 years ago by chrchang523 ♦ 7.3k
0
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0
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1.1k
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0
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How to compare genotype calls of the SNPS on chrom X for the GWAS samples between plink file vs Affymetrix genotype output file?
gwas affymetrix plink ped genotype written 3.3 years ago by bioinforesearchquestions • 280 • updated 3.3 years ago by Biostar ♦♦ 20
2
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3
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7.9k
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3
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Vcftools Can'T Create Ped Map File Due To Ulimit Of Allowed Open Files.
vcf vcftools ped plink written 8.4 years ago by Kevin • 640 • updated 3.6 years ago by a.molkenov • 0
1
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1
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1.8k
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1
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Is there a way to tell PLINK and VCFtools to sort the samples in a particular order?
bed vcftools plink ped sort written 3.7 years ago by beausoleilmo • 330 • updated 3.7 years ago by chrchang523 ♦ 7.3k
0
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1
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1.1k
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1
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Latest release of '1000 genomes data'
vcf 1000 genomes data map ped written 3.8 years ago by tesfadej2003 • 10
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