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11
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1
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1.6k
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8 follow
1
answer
Hapmap3 in hg19/GRCh37 plink format PED and MAP
hapmap 3 hg18 map ped hg19 written 18 months ago by Shicheng Guo • 7.8k
7
votes
2
answers
5.7k
views
5 follow
2
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Plink Raw Format To Ped Format
snps plink ped written 6.0 years ago by kapoor.manav • 40 • updated 5 weeks ago by klkeysb • 10
0
votes
0
answers
148
views
0
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Calculating Kappa value between two SNP matrices in R
kappa gwas snp ped R written 4 months ago by elite420 • 0
6
votes
1
answer
2.6k
views
1
answer
Simple Question About .Ped Format For Gatk And Plink
exome gatk plink ped written 6.7 years ago by el2622 • 0 • updated 5 months ago by Biostar ♦♦ 20
0
votes
0
answers
126
views
0
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DGRP data set
mapfile bimfile ped dgrp written 6 months ago by mvanligten14 • 0
3
votes
1
answer
668
views
1
answer
How can I convert .ped file to bed+bim+fam file using plink 1.9?
gene snp next-gen plink ped written 6 months ago by sofie_carolina • 20 • updated 6 months ago by genomax ♦ 73k
13
votes
2
answers
26k
views
2
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Convert VCFf file to plink ped/map format while filtering the SNPs
plink map ped vcftools written 5.0 years ago by roll • 290 • updated 7 months ago by hakimeazarafra • 0
3
votes
1
answer
3.2k
views
1
answer
Fail to open file in plink
plink ped written 2.2 years ago by janhuang.cn • 150 • updated 8 months ago by zx8754 ♦ 8.2k
29
votes
2
answers
791
views
8 follow
2
answers
Perl/Python script: phased vcf to phased tped
vcf ped phased written 11 months ago by Shicheng Guo • 7.8k
0
votes
0
answers
296
views
0
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how to deal with 0 in allele from ped/map files
plink ped map written 11 months ago by Victor • 10
4
votes
0
answers
1.6k
views
0
answers
How to convert txt or csv files into ped files?
R plink ped python written 15 months ago by sjunlee89 • 0 • updated 12 months ago by zx8754 ♦ 8.2k
8
votes
1
answer
2.9k
views
1
answer
Impute: File Formats ?
linkage haplotype ped written 9.2 years ago by Pierre Lindenbaum ♦ 123k • updated 13 months ago by RamRS ♦ 24k
0
votes
0
answers
402
views
0
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make ped file from SNPChip final_report
snp plink ped written 14 months ago by mary • 210 • updated 14 months ago by Biostar ♦♦ 20
0
votes
0
answers
561
views
0
answers
make ped file
ped written 15 months ago by keivanrz • 0 • updated 15 months ago by Pierre Lindenbaum ♦ 123k
6
votes
2
answers
11k
views
6 follow
2
answers
How To Convert .Ped To .Vcf File
vcf convert ped written 7.3 years ago by cbm • 20 • updated 17 months ago by Kevin Blighe ♦ 49k
1
vote
1
answer
7.2k
views
1
answer
Remove Duplicate Individuals From Plink Ped File Using Plink
gwas plink ped genotype written 5.8 years ago by venkateshr89 • 690 • updated 19 months ago by Vale • 0
2
votes
1
answer
1.3k
views
1
answer
Using snpStats to read a pedfile, object 'm' not found
R plink ped written 2.9 years ago by nadrianam • 30 • updated 20 months ago by Kevin Blighe ♦ 49k
1
vote
1
answer
3.9k
views
1
answer
Reading a .ped file in R?
R plink ped written 3.0 years ago by nadrianam • 30 • updated 20 months ago by fatmasayed93 • 0
0
votes
1
answer
582
views
1
answer
How unphased VCF is converted into ped file?
vcf ddrad phaseing freebayes ped written 20 months ago by jingjin2203 • 40 • updated 20 months ago by Kevin Blighe ♦ 49k
0
votes
1
answer
1.3k
views
1
answer
PLINK2 recode ped flag issue
vcf plink2 plink ped written 2.0 years ago by emyli • 10 • updated 2.0 years ago by tarek.mohamed • 250
0
votes
0
answers
986
views
0
answers
Is it possible to convert back to .ped from .raw (made with plink)?
R raw plink ped written 2.1 years ago by meri.kaustio • 0
0
votes
1
answer
1.0k
views
1
answer
illumina genotype reports _lgen to ped using plink
ped lgen illumina genotype report plink written 2.1 years ago by tarek.mohamed • 250 • updated 2.1 years ago by chrchang523 ♦ 5.6k
0
votes
0
answers
892
views
0
answers
How to compare genotype calls of the SNPS on chrom X for the GWAS samples between plink file vs Affymetrix genotype output file?
gwas affymetrix plink ped genotype written 2.3 years ago by bioinforesearchquestions • 260 • updated 2.2 years ago by Biostar ♦♦ 20
2
votes
3
answers
7.4k
views
3
answers
Vcftools Can'T Create Ped Map File Due To Ulimit Of Allowed Open Files.
vcf vcftools ped plink written 7.4 years ago by Kevin • 630 • updated 2.6 years ago by a.molkenov • 0
1
vote
1
answer
1.3k
views
1
answer
Is there a way to tell PLINK and VCFtools to sort the samples in a particular order?
bed vcftools plink ped sort written 2.7 years ago by beausoleilmo • 250 • updated 2.7 years ago by chrchang523 ♦ 5.6k
0
votes
1
answer
910
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1
answer
Latest release of '1000 genomes data'
vcf 1000 genomes data map ped written 2.8 years ago by tesfadej2003 • 10
0
votes
1
answer
1.4k
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1
answer
plink PED file - randomly select allele at heterozygous site and convert to homozygous
ped adna plink snp genotype written 3.7 years ago by stolarek.ir • 600 • updated 2.9 years ago by zf1992lss • 0
0
votes
0
answers
3.8k
views
0
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How to convert txt file to ped and map using plink
map plink ped txt written 2.9 years ago by BlackHole • 0
0
votes
0
answers
1.0k
views
0
answers
Question: Error converting MAP/PED to GEN in Gtools
gen gtools map ped written 3.0 years ago by sultan.chaudhury • 0
0
votes
0
answers
1.6k
views
0
answers
Compare genotypes from sequencing (vcf) and microarrays (ped)
vcf snp ped sequencing written 3.2 years ago by w0nderingatwork • 40
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