Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing selected topics • reset
or   Classic search
<prev • 66 results • page 1 of 3 • next >
0
votes
0
answers
109
views
0
answers
monozygotic twins ped file specification
gatk pedigree twin ped written 6 weeks ago by cocchi.e89 • 120
2
votes
1
answer
138
views
1
answer
Problems awking columns from map file
ped awk map convertf unix written 3 months ago by Nuthatch • 0 • updated 3 months ago by Bastien Hervé ♦ 4.9k
0
votes
0
answers
239
views
0
answers
How to extract a subset of samples from plink .bed files
bed plink ped written 4 months ago by eyb • 190
3
votes
2
answers
207
views
2
answers
How to check if a word is present in a column of a .ped file
ped bash written 4 months ago by Nuthatch • 0 • updated 4 months ago by chrchang523 ♦ 7.6k
1
vote
0
answers
170
views
0
answers
Problems removing a subset of individuals from ped files
remove plink ped written 5 months ago by Nuthatch • 0
11
votes
1
answer
2.7k
views
8 follow
1
answer
Hapmap3 in hg19/GRCh37 plink format PED and MAP
hapmap 3 hg18 map ped hg19 written 2.8 years ago by Shicheng Guo • 8.5k
7
votes
2
answers
6.5k
views
5 follow
2
answers
Plink Raw Format To Ped Format
snps plink ped written 7.3 years ago by kapoor.manav • 40 • updated 16 months ago by klkeysb • 10
0
votes
0
answers
328
views
0
answers
Calculating Kappa value between two SNP matrices in R
kappa gwas snp ped R written 20 months ago by elite420 • 0
6
votes
1
answer
2.9k
views
1
answer
Simple Question About .Ped Format For Gatk And Plink
exome gatk plink ped written 8.0 years ago by el2622 • 0 • updated 20 months ago by Biostar ♦♦ 20
0
votes
0
answers
267
views
0
answers
DGRP data set
mapfile bimfile ped dgrp written 21 months ago by mvanligten14 • 0
3
votes
1
answer
2.8k
views
1
answer
How can I convert .ped file to bed+bim+fam file using plink 1.9?
gene snp next-gen plink ped written 22 months ago by sofie_carolina • 20 • updated 22 months ago by GenoMax ♦ 94k
17
votes
2
answers
33k
views
6 follow
2
answers
Convert VCFf file to plink ped/map format while filtering the SNPs
plink map ped vcftools written 6.3 years ago by roll • 330 • updated 23 months ago by hakimeazarafra • 0
4
votes
1
answer
5.6k
views
1
answer
Fail to open file in plink
plink ped written 3.4 years ago by janhuang.cn • 150 • updated 23 months ago by zx8754 ♦ 9.9k
29
votes
2
answers
1.2k
views
8 follow
2
answers
Perl/Python script: phased vcf to phased tped
vcf ped phased written 2.2 years ago by Shicheng Guo • 8.5k
0
votes
0
answers
509
views
0
answers
how to deal with 0 in allele from ped/map files
plink ped map written 2.2 years ago by Victor • 10
4
votes
0
answers
3.5k
views
0
answers
How to convert txt or csv files into ped files?
R plink ped python written 2.5 years ago by sjunlee89 • 0 • updated 2.3 years ago by zx8754 ♦ 9.9k
8
votes
1
answer
3.5k
views
1
answer
Impute: File Formats ?
linkage haplotype ped written 10.5 years ago by Pierre Lindenbaum ♦ 133k • updated 2.3 years ago by _r_am ♦ 32k
0
votes
0
answers
764
views
0
answers
make ped file from SNPChip final_report
snp plink ped written 2.5 years ago by mary • 210 • updated 2.4 years ago by Biostar ♦♦ 20
0
votes
0
answers
1.0k
views
0
answers
make ped file
ped written 2.5 years ago by keivanrz • 0 • updated 2.5 years ago by Pierre Lindenbaum ♦ 133k
8
votes
2
answers
13k
views
7 follow
2
answers
How To Convert .Ped To .Vcf File
vcf convert ped written 8.6 years ago by cbm • 20 • updated 2.7 years ago by Kevin Blighe ♦ 69k
1
vote
1
answer
8.6k
views
1
answer
Remove Duplicate Individuals From Plink Ped File Using Plink
gwas plink ped genotype written 7.0 years ago by venks • 720 • updated 2.9 years ago by Ginevra • 0
2
votes
1
answer
1.8k
views
1
answer
Using snpStats to read a pedfile, object 'm' not found
R plink ped written 4.2 years ago by nadrianam • 40 • updated 2.9 years ago by Kevin Blighe ♦ 69k
2
votes
1
answer
5.5k
views
1
answer
Reading a .ped file in R?
R plink ped written 4.2 years ago by nadrianam • 40 • updated 2.9 years ago by fatmasayed93 • 0
0
votes
1
answer
804
views
1
answer
How unphased VCF is converted into ped file?
vcf ddrad phaseing freebayes ped written 3.0 years ago by jingjin2203 • 40 • updated 3.0 years ago by Kevin Blighe ♦ 69k
0
votes
1
answer
1.9k
views
1
answer
PLINK2 recode ped flag issue
vcf plink2 plink ped written 3.3 years ago by emyli • 10 • updated 3.3 years ago by tarek.mohamed • 270
0
votes
0
answers
1.5k
views
0
answers
Is it possible to convert back to .ped from .raw (made with plink)?
R raw plink ped written 3.3 years ago by meri.kaustio • 0
0
votes
1
answer
1.5k
views
1
answer
illumina genotype reports _lgen to ped using plink
ped lgen illumina genotype report plink written 3.4 years ago by tarek.mohamed • 270 • updated 3.4 years ago by chrchang523 ♦ 7.6k
0
votes
0
answers
1.1k
views
0
answers
How to compare genotype calls of the SNPS on chrom X for the GWAS samples between plink file vs Affymetrix genotype output file?
gwas affymetrix plink ped genotype written 3.5 years ago by bioinforesearchquestions • 280 • updated 3.5 years ago by Biostar ♦♦ 20
2
votes
3
answers
8.1k
views
3
answers
Vcftools Can'T Create Ped Map File Due To Ulimit Of Allowed Open Files.
vcf vcftools ped plink written 8.6 years ago by Kevin • 640 • updated 3.9 years ago by a.molkenov • 0
1
vote
1
answer
1.9k
views
1
answer
Is there a way to tell PLINK and VCFtools to sort the samples in a particular order?
bed vcftools plink ped sort written 4.0 years ago by beausoleilmo • 360 • updated 4.0 years ago by chrchang523 ♦ 7.6k
<prev • 66 results • page 1 of 3 • next >
Recent Votes
Recent Locations • All »
  • Belgium, Brussels, 3 minutes ago
  • Canada, 3 minutes ago
  • USA, 7 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1379 users visited in the last hour