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make ped file
ped written 7 days ago by keivanrz • 0 • updated 7 days ago by Pierre Lindenbaum ♦ 110k
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6 follow
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How To Convert .Ped To .Vcf File
vcf convert ped written 6.1 years ago by cbm • 20 • updated 9 weeks ago by Kevin Blighe ♦ 24k
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443
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6 follow
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Hapmap 3 in hg19/GRCh37 plink format PED and MAP
hapmap 3 hg18 map ped hg19 written 3 months ago by Shicheng Guo • 5.2k
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1
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1
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Remove Duplicate Individuals From Plink Ped File Using Plink
gwas plink ped genotype written 4.5 years ago by venkateshr89 • 690 • updated 4 months ago by Vale • 0
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1
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802
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Using snpStats to read a pedfile, object 'm' not found
R plink ped written 20 months ago by nadrianam • 30 • updated 4 months ago by Kevin Blighe ♦ 24k
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Reading a .ped file in R?
R plink ped written 20 months ago by nadrianam • 30 • updated 4 months ago by fatmasayed93 • 0
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254
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How unphased VCF is converted into ped file?
vcf ddrad phaseing freebayes ped written 5 months ago by jingjin2203 • 0 • updated 5 months ago by Kevin Blighe ♦ 24k
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PLINK2 recode ped flag issue
vcf plink2 plink ped written 9 months ago by emyli • 0 • updated 9 months ago by tarek.mohamed • 180
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Is it possible to convert back to .ped from .raw (made with plink)?
R raw plink ped written 10 months ago by meri.kaustio • 0
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452
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illumina genotype reports _lgen to ped using plink
ped lgen illumina genotype report plink written 10 months ago by tarek.mohamed • 180 • updated 10 months ago by chrchang523 ♦ 3.6k
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Fail to open file in plink
ped open file written 11 months ago by janhuang.cn • 80 • updated 11 months ago by Ram ♦ 16k
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How to compare genotype calls of the SNPS on chrom X for the GWAS samples between plink file vs Affymetrix genotype output file?
gwas affymetrix plink ped genotype written 12 months ago by bioinforesearchquestions • 140 • updated 12 months ago by Biostar ♦♦ 20
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Vcftools Can'T Create Ped Map File Due To Ulimit Of Allowed Open Files.
vcf vcftools ped plink written 6.1 years ago by Kevin • 590 • updated 16 months ago by a.molkenov • 0
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Is there a way to tell PLINK and VCFtools to sort the samples in a particular order?
bed vcftools plink ped sort written 18 months ago by beausoleilmo • 190 • updated 18 months ago by chrchang523 ♦ 3.6k
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538
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1
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Latest release of '1000 genomes data'
vcf 1000 genomes data map ped written 18 months ago by tesfadej2003 • 10
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1
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1.0k
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1
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plink PED file - randomly select allele at heterozygous site and convert to homozygous
ped adna plink snp genotype written 2.5 years ago by stolarek.ir • 550 • updated 19 months ago by zf1992lss • 0
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How to convert txt file to ped and map using plink
map plink ped txt written 19 months ago by BlackHole • 0
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670
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Question: Error converting MAP/PED to GEN in Gtools
gen gtools map ped written 21 months ago by sultan.chaudhury • 0
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Compare genotypes from sequencing (vcf) and microarrays (ped)
vcf snp ped sequencing written 23 months ago by w0nderingatwork • 40
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1.4k
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how to add pedigree info into VCF
vcf pedigree ped written 2.3 years ago by CrazyB • 190 • updated 2.3 years ago by Ram ♦ 16k
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1
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1
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convert plink to weka
weka plink ped map written 2.5 years ago by marwa.cs91 • 20
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1
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1.1k
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1
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Can PLINK handle gzipped ped / map files?
plink ped written 2.6 years ago by Juan Manuel Berros • 70 • updated 2.6 years ago by chrchang523 ♦ 3.6k
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1.1k
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How to handle missing values using Expectation Maximization
expectation maximization plink ped map written 2.6 years ago by marwa.cs91 • 20 • updated 2.6 years ago by Jean-Karim Heriche ♦ 16k
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1
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1.5k
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Pedigree file information
pedigree plink ped .ped written 2.7 years ago by Mani • 20 • updated 2.7 years ago by Pierre Lindenbaum ♦ 110k
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5 follow
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Converting Tped To Ped
plink ped written 4.8 years ago by Click downvote • 620 • updated 2.7 years ago by Simo • 30
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Calculate Allele Frequency from PLINK PED/MAP files
allele frequency snp plink ped map written 2.8 years ago by shahil229.sa • 0
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Understanding AWClust's SNP file data format and converting a PED file to it
snp allele plink ped written 3.0 years ago by aritra90 • 20 • updated 3.0 years ago by Biostar ♦♦ 20
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1
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PED & MAP file extension
plink ped map written 3.2 years ago by Rakan • 0 • updated 3.0 years ago by Fabio Marroni • 1.8k
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Merge VCF files from different individuals
vcf merge ped written 3.2 years ago by jmmonroykuhn • 20
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ped to HGDP format conversion
hgdp ped written 3.2 years ago by eyb • 150
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