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11
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1
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2.1k
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8 follow
1
answer
Hapmap3 in hg19/GRCh37 plink format PED and MAP
hapmap 3 hg18 map ped hg19 written 2.3 years ago by Shicheng Guo • 8.3k
7
votes
2
answers
6.1k
views
5 follow
2
answers
Plink Raw Format To Ped Format
snps plink ped written 6.7 years ago by kapoor.manav • 40 • updated 9 months ago by klkeysb • 10
0
votes
0
answers
267
views
0
answers
Calculating Kappa value between two SNP matrices in R
kappa gwas snp ped R written 13 months ago by elite420 • 0
6
votes
1
answer
2.8k
views
1
answer
Simple Question About .Ped Format For Gatk And Plink
exome gatk plink ped written 7.5 years ago by el2622 • 0 • updated 14 months ago by Biostar ♦♦ 20
0
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0
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219
views
0
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DGRP data set
mapfile bimfile ped dgrp written 15 months ago by mvanligten14 • 0
3
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1
answer
1.7k
views
1
answer
How can I convert .ped file to bed+bim+fam file using plink 1.9?
gene snp next-gen plink ped written 15 months ago by sofie_carolina • 20 • updated 15 months ago by genomax ♦ 85k
16
votes
2
answers
30k
views
6 follow
2
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Convert VCFf file to plink ped/map format while filtering the SNPs
plink map ped vcftools written 5.8 years ago by roll • 310 • updated 16 months ago by hakimeazarafra • 0
3
votes
1
answer
4.4k
views
1
answer
Fail to open file in plink
plink ped written 2.9 years ago by janhuang.cn • 150 • updated 16 months ago by zx8754 ♦ 9.3k
29
votes
2
answers
1.0k
views
8 follow
2
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Perl/Python script: phased vcf to phased tped
vcf ped phased written 20 months ago by Shicheng Guo • 8.3k
0
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0
answers
427
views
0
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how to deal with 0 in allele from ped/map files
plink ped map written 20 months ago by Victor • 10
4
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0
answers
2.6k
views
0
answers
How to convert txt or csv files into ped files?
R plink ped python written 23 months ago by sjunlee89 • 0 • updated 21 months ago by zx8754 ♦ 9.3k
8
votes
1
answer
3.2k
views
1
answer
Impute: File Formats ?
linkage haplotype ped written 9.9 years ago by Pierre Lindenbaum ♦ 129k • updated 21 months ago by RamRS ♦ 27k
0
votes
0
answers
615
views
0
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make ped file from SNPChip final_report
snp plink ped written 23 months ago by mary • 210 • updated 23 months ago by Biostar ♦♦ 20
0
votes
0
answers
804
views
0
answers
make ped file
ped written 24 months ago by keivanrz • 0 • updated 24 months ago by Pierre Lindenbaum ♦ 129k
8
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2
answers
12k
views
7 follow
2
answers
How To Convert .Ped To .Vcf File
vcf convert ped written 8.0 years ago by cbm • 20 • updated 2.1 years ago by Kevin Blighe ♦ 61k
1
vote
1
answer
7.9k
views
1
answer
Remove Duplicate Individuals From Plink Ped File Using Plink
gwas plink ped genotype written 6.5 years ago by venks • 710 • updated 2.3 years ago by Ginevra • 0
2
votes
1
answer
1.6k
views
1
answer
Using snpStats to read a pedfile, object 'm' not found
R plink ped written 3.7 years ago by nadrianam • 30 • updated 2.4 years ago by Kevin Blighe ♦ 61k
1
vote
1
answer
4.8k
views
1
answer
Reading a .ped file in R?
R plink ped written 3.7 years ago by nadrianam • 30 • updated 2.4 years ago by fatmasayed93 • 0
0
votes
1
answer
712
views
1
answer
How unphased VCF is converted into ped file?
vcf ddrad phaseing freebayes ped written 2.4 years ago by jingjin2203 • 40 • updated 2.4 years ago by Kevin Blighe ♦ 61k
0
votes
1
answer
1.7k
views
1
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PLINK2 recode ped flag issue
vcf plink2 plink ped written 2.7 years ago by emyli • 10 • updated 2.7 years ago by tarek.mohamed • 260
0
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0
answers
1.3k
views
0
answers
Is it possible to convert back to .ped from .raw (made with plink)?
R raw plink ped written 2.8 years ago by meri.kaustio • 0
0
votes
1
answer
1.3k
views
1
answer
illumina genotype reports _lgen to ped using plink
ped lgen illumina genotype report plink written 2.8 years ago by tarek.mohamed • 260 • updated 2.8 years ago by chrchang523 ♦ 7.1k
0
votes
0
answers
1.1k
views
0
answers
How to compare genotype calls of the SNPS on chrom X for the GWAS samples between plink file vs Affymetrix genotype output file?
gwas affymetrix plink ped genotype written 3.0 years ago by bioinforesearchquestions • 280 • updated 3.0 years ago by Biostar ♦♦ 20
2
votes
3
answers
7.7k
views
3
answers
Vcftools Can'T Create Ped Map File Due To Ulimit Of Allowed Open Files.
vcf vcftools ped plink written 8.1 years ago by Kevin • 630 • updated 3.3 years ago by a.molkenov • 0
1
vote
1
answer
1.6k
views
1
answer
Is there a way to tell PLINK and VCFtools to sort the samples in a particular order?
bed vcftools plink ped sort written 3.5 years ago by beausoleilmo • 310 • updated 3.5 years ago by chrchang523 ♦ 7.1k
0
votes
1
answer
1.1k
views
1
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Latest release of '1000 genomes data'
vcf 1000 genomes data map ped written 3.5 years ago by tesfadej2003 • 10
0
votes
1
answer
1.6k
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1
answer
plink PED file - randomly select allele at heterozygous site and convert to homozygous
ped adna plink snp genotype written 4.4 years ago by stolarek.ir • 650 • updated 3.6 years ago by zf1992lss • 0
0
votes
0
answers
4.5k
views
0
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How to convert txt file to ped and map using plink
map plink ped txt written 3.6 years ago by BlackHole • 0
0
votes
0
answers
1.2k
views
0
answers
Question: Error converting MAP/PED to GEN in Gtools
gen gtools map ped written 3.7 years ago by sultan.chaudhury • 0
0
votes
0
answers
1.8k
views
0
answers
Compare genotypes from sequencing (vcf) and microarrays (ped)
vcf snp ped sequencing written 3.9 years ago by w0nderingatwork • 40
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