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written 5 months ago by
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Recent Replies
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C: Shifting reads for ATAC-seq alignments by
Ravi Patel • 0
Hello James, If I understand your `awk` command correctly, $2 represents 5' end of R1 (/left-mo...
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A: Reads per COG normalization by
Mensur Dlakic • 40
> Is there some way to normalize the number of reads mapped to each COG taken this information...
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A: Megahit Assembly - command line error by
Mensur Dlakic • 40
This part of your command **./megahit** means that you have a *megahit* executable in the present...
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C: Reads per COG normalization by
Asaf ♦ 5.9k
There are a lot of ways to normalize the data, the only question is why do you want to normalize it?
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C: Megahit Assembly - command line error by
Asaf ♦ 5.9k
Do you get an error?
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C: limma voom - mean variance trend by
furrdinand • 0
Yes, I used calcNormFactors with the TMM method prior to voom normalization on the dge object.
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C: ABySS OpenMP version by
SMK • 1.4k
No worries, updated by [https://www.biostars.org/u/23882/][1] already. [1]: https://www.biost...
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A: How to find out human mtDNA genes in d-loop control region for Indian origin onl by
grant.hovhannisyan • 1.6k
D-loop is a non-coding region, so it does not contain genes. Most probably you are looking for m...
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C: Distinguishing between different formats for VCF file indexes by
cmdcolin • 1.2k
Probably you can tell by the file extension. IDX is a "tribble index" and TBI is a tabix index
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C: ABySS OpenMP version by
SMK • 1.4k
You might need to edit the post (not to use the code chunk mode) to increase the readability.
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A: Filtered a .vcf file based on id of a second file by
cerriguglielmo • 0
Ok, the sample file contains the id while the file contains all data: The command that generate t...
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C: How to do data cleaning for VCF genetic file by
Shicheng Guo • 7.5k
the remaining task includes: Statistics: Alternative allele frequency > 0.5 sites: 3...
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