Showing: rnaseqreset
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Error upon running HTseq with paired end aligned BAM (coordinate sorted) files
htseq rnaseq written 21 days ago by bnayer260 • updated 21 days ago by h.mon24k
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SNP calling using samtools
rnaseq samtools bcftools snp mpileup written 10 weeks ago by ankit4035hinsu10 • updated 7 weeks ago by Biostar ♦♦ 20
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Problem in running STAR
rnaseq star written 8 weeks ago by majeedaasim30
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News: BETA Testing Opportunity for new RNA-seq data analysis tool
news ngs beta omics multi-omics rnaseq written 9 weeks ago by polina990 • updated 9 weeks ago by WouterDeCoster37k
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Trimmomatic confirmation, multiple indeces per sample?!
trimmomatic rnaseq trimming written 3 months ago by T_1820 • updated 3 months ago by finswimmer11k
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WGCNA threshold values
rnaseq wgcna threshold clustering written 3 months ago by priyankaraina1010 • updated 3 months ago by Kevin Blighe39k
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STAR alignment error: quantmod not found
rnaseq alignment star written 3 months ago by prabin.dm30 • updated 3 months ago by Devon Ryan88k
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Tutorial: retrieve full TCGA datasets from cBioportal with R
data_retrieval tutorial tcga R cbioportal rnaseq written 2.4 years ago by TriS3.6k • updated 4 months ago by akshayb0420
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comparing two ratios in RNASeq data
rnaseq deseq2 written 4 months ago by mike60 • updated 4 months ago by Martombo2.4k
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CIGAR and sequence length are inconsistent after HISAT alignment
rnaseq hisat alignment written 4 months ago by DVA500 • updated 4 months ago by Devon Ryan88k
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Sequenced sample twice, can I merge the fastqs to analyze?
rnaseq fastq written 5 months ago by Pin.Bioinf240 • updated 5 months ago by geek_y9.3k
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RNAseq computer source for TopHat and Cufflinks
rnaseq cufflinks written 5 months ago by agata88770 • updated 5 months ago by Charles Warden6.4k
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How to create design matrix for confounder (here sunlight) in edgeR ?
rnaseq edger written 5 months ago by Bj√∂rn40 • updated 5 months ago by b.nota6.3k
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Why can't I replicate DESeq's Log2FC calculation?
rnaseq deseq2 deseq rna-seq written 3.1 years ago by Kristin Muench380 • updated 6 months ago by RamRS20k
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Problem with bad quality bases in RNAseq
rnaseq written 3.7 years ago by silas00880 • updated 6 months ago by Biostar ♦♦ 20
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Trying to add ensembl_transcript_id using Biomart
rnaseq biomart written 6 months ago by sandKings10 • updated 6 months ago by krushnach80470
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