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Music SMG test for non coding regions

non-coding roi music maf written 10 months ago by anshupa.vssut • 20 • updated 10 months ago by WouterDeCoster ♦ 21k

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Recent Replies

A: AB1 Files free download by sacha • 800
I have some files in my cutepeaks github repository. https://github.com/labsquare/CutePeaks/tree...
C: AB1 Files free download by Pierre Lindenbaum ♦ 98k
https://www.google.com/search?q=filetype%3Aab1+sequence
C: VCF file analysis to find genome wide association by arash.iranzadeh1980 • 10
Thank you very much, seems useful.
C: Different PCA plots using rlog and vsd on the same data set by Devon Ryan ♦ 70k
You'll need to upload them elsewhere and then link to them.
C: Extract all paired reads from sam file by reza • 140
do you want to extract paired end reads that map to reference in to fastq files?
A: single cell RNAseq best tool and work flow by geek_y ♦ 8.0k
A very recent workflow of single cell RNA analysis, includes the code and data sets. https://f10...
C: Different PCA plots using rlog and vsd on the same data set by lirongrossmann • 10
I would love to! Is there a way to upload the plots?
C: Selecting genes that best separate between two groups by lirongrossmann • 10
I initially wrote my response as a comment but was asked to write it as a reply to your comment. ...
A: linc noncoding RNA from chIPseq by geek_y ♦ 8.0k
As a first step, you can take the LncRNAs from the standard annotations, and check if there is an...
C: Different PCA plots using rlog and vsd on the same data set by geek_y ♦ 8.0k
You should post the PCA Plot. You can anonymise the sample labels if you don't wish to show the s...
C: Narrow & Broad peaks from 'macs2 bdgdiff' by anupriyaverma1408 • 100
Yes, MAnorm sounds better. The MAnorm's manual says that it gives M & A values too. Can I say...
A: VCF file analysis to find genome wide association by Kevin Blighe • 1.2k
I would normalise the VCF file and convert it to PLINK format as per my thread HERE, and then run...

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