Showing: shellreset
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Find bams with identical names and merge them
shell picard samtools sam bam written 6 weeks ago by brendes20 • updated 6 weeks ago by cpad011211k
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grep/awk issue: can't extract sequences from a fasta file
fasta extraction sequence grep shell written 8 months ago by benoit.kunath10 • updated 3 months ago by Biostar ♦♦ 20
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Forum: Awk in Bioinformatics
perl forum shell awk written 5 months ago by Shicheng Guo7.4k
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taxa names in phylogenetic tree
perl phylogenetics newick shell written 4 months ago by erick_rc930 • updated 4 months ago by Pierre Lindenbaum116k
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Convert gff3 to gtf with R or shell
gff3 R ngs shell gtf written 6 months ago by bioinfo8100
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Is there a code to find consensus motif
python C shell awk written 6 months ago by vinayjrao110 • updated 6 months ago by Carlo Yague4.4k
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Selecting intergenic regions
grep shell file-handling written 8 months ago by vinayjrao110 • updated 8 months ago by M2015701160
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reduce size of string
python sequence shell written 9 months ago by Jason0 • updated 9 months ago by cpad011211k
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How to extract specific rows based on row number from a file
extract shell file-handling written 9 months ago by vinayjrao110 • updated 9 months ago by shenwei3564.5k
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Replace <*> column with nucleotide in python or R or Shell
nucleotide python replace shell R written 11 months ago by Kritika260 • updated 11 months ago by Bastien Hervé3.3k
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updating a cell in a file
sed shell awk written 11 months ago by vinayjrao110 • updated 11 months ago by Shred140
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extracting a specific field from .bed file and sort into new file
bed bash script shell python written 16 months ago by g.sathish.k0 • updated 16 months ago by Pierre Lindenbaum116k
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Mistakes in a bash script for adding taxid for nt database
taxid efetch nt database shell bash written 20 months ago by wyc66121710 • updated 20 months ago by Istvan Albert ♦♦ 79k
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shell script for bowtie/bwa alignment pair end reads
illumina fastq shell bwa bowtie written 4.1 years ago by Paul1.3k • updated 21 months ago by emad.albarouki0
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Simple amino acid polymorphism count
alignment unix shell written 23 months ago by stutterdust0 • updated 22 months ago by st.ph.n2.4k
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replace vcf file ID column
vcf phython replace column shell linux written 23 months ago by tanya.copley10 • updated 23 months ago by Pierre Lindenbaum116k
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