Showing: snakemakereset
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Seeking help with snakemake
snakemake written 6 days ago by Ming40
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8 follow
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Running python script in Snakemake without input/output
snakemake written 15 days ago by Hansen_86910 • updated 15 days ago by Eric Lim1.6k
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snakemake and Star aligner code issue
snakemake written 8 weeks ago by lawrence.hsu10 • updated 8 weeks ago by letlovelead13130
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Snakemake FastQC MissingOutputFiles ErrorM
snakemake fastqc written 8 weeks ago by lasejourny10 • updated 8 weeks ago by bari.ballew190
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381
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Snakemake input and wildcards
python snakemake written 11 weeks ago by Rox1.1k • updated 11 weeks ago by Thibault D.650
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missingoutputexception, snakemake after completing 95% analysis
snakemake rna-seq fastqc written 4 months ago by arshil0 • updated 11 weeks ago by Biostar ♦♦ 20
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Forum: Snakemake vs. Nextflow: strengths and weaknesses
forum snakemake nextflow written 2.4 years ago by ropolocan600 • updated 3 months ago by Shicheng Guo7.8k
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268
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Snakemake: output folder a as dependency to a different rule
snakemake rna-seq written 3 months ago by Veewhy10 • updated 3 months ago by gb1.2k
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56 follow
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316
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MissingInputException in snakemake workflow
snakemake written 3 months ago by jmat0 • updated 3 months ago by Medhat8.5k
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HIsat2 bam and summary output - multiple output file type
snakemake rna-seq sequencing written 4 months ago by Payal40 • updated 4 months ago by Carlo Yague4.7k
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snakemake wildcard for fastq files
config.yaml snakemake rna-seq written 5 months ago by arshil0 • updated 5 months ago by bari.ballew190
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260
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Appropriate use of wildcards for single instances in Snakemake
wildcards snakemake garfield written 5 months ago by camerond100 • updated 5 months ago by Jeremy Leipzig18k
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Snakemake logging error
log snakemake written 5 months ago by camerond100
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352
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Issue running deeptools on cluster via snakemake
deeptools snakemake written 6 months ago by camerond100 • updated 6 months ago by russhh4.8k
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beginner snakemake scatter gather help
snakemake written 8 months ago by Richard570
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605
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5 follow
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4
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377
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Create snakefile based on R script
R python snakemake snakefile written 10 months ago by r.tor40 • updated 10 months ago by WouterDeCoster42k
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