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Recent Replies
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C: Meta-analysis on microaray data, when a sinlge experiment contains diferent tiss by
catechize.2.learn • 80
Thank you indeed very much. Is there a quantitative measure in common use for such situations? A...
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A: How to download large amount of data from NCBI? by
genomax ♦ 71k
Besides the NCBI eUtils options noted you can also take a look at Kai Blin's NCBI [genome downloa...
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A: Meta-analysis on microaray data, when a sinlge experiment contains diferent tiss by
Kevin Blighe ♦ 48k
The transcriptional profiles of neurons and PBMCs are 'quite' (very) different, so, you may consi...
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C: Link pathways to Gene Onthologies from RNA-seq differential expressed genes by
lucatucciarone • 50
Unfortunately not, it's from the IPA knowledgeabase. I wanna say I'm not married to IPA, I can ...
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A: How to download large amount of data from NCBI? by
joe • 60
It seems like you're trying to do this through a web browser, which will just lead to frustration...
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C: merge Bam files and get VCF file by
Pierre Lindenbaum ♦ 123k
i you have defined read-groups, for each sample, there should be no difference event if you merg...
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C: merge Bam files and get VCF file by
khatami.mahshid • 10
I have read the link you shared, I didn't understand it properly. how should my bam file header b...
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A: merge Bam files and get VCF file by
Pierre Lindenbaum ♦ 123k
my answer depends of your sam header+ read-group ( https://gatkforums.broadinstitute.org/gatk/dis...
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A: where to download mm9.fa masked? by
Jean-Karim Heriche ♦ 20k
You can get this from the [Ensembl FTP site][1]. Since this is an old version, you'll have to fig...
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C: May I use NB.MClust package for RNASeq genes clustering instead of samples clust by
J. Smith • 0
Thanks a lot for your response.
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C: Multiple alignment software by
fishgolden • 410
They are amino acid sequences thus they must be reverse translated into nucleotide when you bench...
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C: Multiple alignment software by
Joe ♦ 14k
Why not? It’s literally for benchmarking nucleotide alignments as you say. It’s a good litmus te...
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