wgsim Posts

Latest

Open

RNA-Seq

ChIP-Seq

SNP

Assembly

Tutorials

Tools

Jobs

Forum

Planet

All »

Home

Welcome to Biostar! about • faq • rss

Community

Log In

Sign Up

Add New Post

Showing: wgsim • reset

or Classic search

votes

answers

views

answers

Benchmarking single SNP mapping

snps bowtie wgsim bwa mapping written 26 days ago by Josh Herr ♦ 5.5k • updated 14 days ago by Biostar ♦♦ 20

votes

answer

124

views

answer

The reads simluted with wgsim

illumina next-gen wgsim sequencing written 9 weeks ago by 934963534 • 10 • updated 9 weeks ago by Istvan Albert ♦♦ 76k

votes

answers

162

views

answers

How to interepet wgsim roc results

next-gen alignment roc wgsim written 3 months ago by Agaz Hussain Wani • 40

votes

answer

509

views

answer

wgsim no output

reads assembly wgsim written 12 months ago by robinjugas • 0

votes

answers

967

views

answers

Tutorial: Using wgsim to generate mate pair and single reads

tutorial wgsim written 2.6 years ago by Luke Crichton • 310

votes

answers

1.1k

views

answers

simulate reads with zero mutations

wgsim written 3.1 years ago by jyu429 • 120

vote

answer

1.2k

views

answer

Help understanding wgsim_eval.pl output

alignment wgsim bam bwa written 3.3 years ago by Daniel Standage ♦ 3.7k • updated 3.3 years ago by Devon Ryan ♦ 79k

votes

answer

1.8k

views

answer

wgsim - number of reads in ouput does not match set parameter

simulation wgsim read simulation written 4.1 years ago by Brett Kennedy • 50 • updated 4.1 years ago by Istvan Albert ♦♦ 76k

Recent Votes

Recent Locations • All »

United States, 2 minutes ago
Germany, 3 minutes ago
UFRJ, Rio de Janeiro, Brazil, 5 minutes ago
WashingtonDC, 5 minutes ago
United States, 5 minutes ago
Russian Federation, 6 minutes ago

Recent Awards • All »

Autobiographer to daniellegrimaldi • 0
Popular Question to Mehmet • 330
Popular Question to Mehmet • 330
Commentator to Jean-Karim Heriche ♦ 15k
Teacher to Kevin Blighe ♦ 19k
Scholar to cschu181 • 1.1k

Recent Replies

C: Demultiplex file on MG-RAST server by daniellegrimaldi • 0
I tried metazen. it didn't work. I've tried several different things. Mg-rast shows that the name...
C: statistics data, observed vs expected values by Jean-Karim Heriche ♦ 15k
What do you mean by "to classify the genomes according to their observed and expected values" ? T...
C: Does high or low GC content affect base quality? by Tania • 120
No, I have a variant with very low GC content. Found in all affected except one person. This pers...
C: Getting average fragment length for single end reads by genomax ♦ 48k
There is no way to calculate average fragment size based on single-end sequencing data. You may b...
C: Does high or low GC content affect base quality? by genomax ♦ 48k
I don't think there should be a big difficulty proving a variant by Sanger sequencing. Sounds lik...
C: Demultiplex file on MG-RAST server by genomax ♦ 48k
> the message "could not validate metadata" appears I would suggest looking into that. Did yo...
C: How to merge chr+strand+coordinate+score from multiple files? by Alex Reynolds ♦ 24k
Can you remove the column headers from your input files? I'd be curious to see if that fixes the ...
A: Getting average fragment length for single end reads by dark.lord • 0
Is it wrong to use the one-liner provided here to calculate average fragment size and sd? https:/...
C: Exon number of chromosomal position by cpad0112 • 5.3k
Intersect vcf with gtf with exon coordinates.
C: How to merge chr+strand+coordinate+score from multiple files? by cpad0112 • 5.3k
with individual scores in a single column: $ cat test1.txt <(tail -n+2 test2.txt) | datam...
C: Differential Expression analysis using Wald-Test by Kevin Blighe ♦ 19k
I believe you should loop over your genes and test each independently via the Wald test. After yo...
C: Differential Expression analysis using Wald-Test by Duckula • 0
Dear Kevin, Thanks a lot for your comprehensive answer. I really do appreciate it! I am going to...

Content

Help

About
FAQ

Access

RSS
Stats
API

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Traffic: 738 users visited in the last hour