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225

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Benchmarking single SNP mapping

snps bowtie wgsim bwa mapping written 6 months ago by Josh Herr ♦ 5.6k • updated 6 months ago by Biostar ♦♦ 20

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267

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The reads simluted with wgsim

illumina next-gen wgsim sequencing written 8 months ago by 934963534 • 10 • updated 8 months ago by Istvan Albert ♦♦ 78k

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280

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How to interepet wgsim roc results

next-gen alignment roc wgsim written 8 months ago by Agaz Hussain Wani • 40

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645

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wgsim no output

reads assembly wgsim written 18 months ago by robinjugas • 0

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1.1k

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Tutorial: Using wgsim to generate mate pair and single reads

tutorial wgsim written 3.1 years ago by Luke Crichton • 320

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1.3k

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simulate reads with zero mutations

wgsim written 3.6 years ago by jyu429 • 120

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1.4k

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Help understanding wgsim_eval.pl output

alignment wgsim bam bwa written 3.8 years ago by Daniel Standage ♦ 3.8k • updated 3.8 years ago by Devon Ryan ♦ 86k

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2.0k

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wgsim - number of reads in ouput does not match set parameter

simulation wgsim read simulation written 4.5 years ago by Brett Kennedy • 50 • updated 4.5 years ago by Istvan Albert ♦♦ 78k

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Recent Replies

C: Documentation on VCI files? Or convert VCI to VCF? by QVINTVS_FABIVS_MAXIMVS • 2.1k
Thanks a ton, this is what I was looking for.
C: Documentation on VCI files? Or convert VCI to VCF? by h.mon ♦ 21k
I think VCI is a format from the g2gtools package. It is created from vcf files. Apparently, ther...
C: Documentation on VCI files? Or convert VCI to VCF? by QVINTVS_FABIVS_MAXIMVS • 2.1k
Diversity Outbred cohort of mouse lines that are derived from 8 founder strains. These mice are e...
C: How can keep the change in my fastq file when i use grep and sed to edit it? by h.mon ♦ 21k
And adding "ILLUMINA" to the headers will make markduplicate work? Are you referring to Picard Ma...
C: How can keep the change in my fastq file when i use grep and sed to edit it? by Zeason • 0
i will try it and thanks a lot :) maybe my question is really stupid , but i really suffered from...
C: How can keep the change in my fastq file when i use grep and sed to edit it? by Zeason • 0
thank you very much ,i will try it
C: Documentation on VCI files? Or convert VCI to VCF? by h.mon ♦ 21k
Where did you obtain this file? What are the DO mouse lines?
C: How can keep the change in my fastq file when i use grep and sed to edit it? by Zeason • 0
can you just explain the meaning of "1~4" to me ? thanks a lot
C: How can keep the change in my fastq file when i use grep and sed to edit it? by Zeason • 0
i just want change the each id of my reads . i think the way you recommend will change the qualit...
A: Paired DMR methylation caller by Charles Warden ♦ 5.6k
[methylKit][1] allows use of a covariate, and tends to be relatively sensitive. If you have pre-...
C: Reference Genome how does it validate by premraj.preeti • 0
Thanks for the reply. Yes I meant human genome.
C: Why tumor samples of a same TCGA donor get different VAF via WGS and ATAC seq? by solo7773 • 60
Thanks ATpoint for your great answer.

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