Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : questions
1
vote
2
replies
855
views
How to run UMAP on single cell results from 2 different runs?
single-cell seurat cellranger
updated 17 months ago by 3.9k • written 17 months ago by ▴ 150
1
vote
3
replies
740
views
How to check gene properties (eg GC, repetitiveness, average expression level)?
deseq2 kallisto RNA-seq
updated 15 months ago by 43k • written 18 months ago by ▴ 150
0
votes
10
replies
1.3k
views
Can I demultiplex run based on i5 sequence?
demultiplexing bcl2fastq
updated 18 months ago by 142k • written 18 months ago by ▴ 150
3
votes
13
replies
3.2k
views
How to choose parameters for kallisto single end mode?
kallisto RNA-seq
updated 12 months ago by 100k • written 18 months ago by ▴ 150
7
votes
3
replies
2.0k
views
Should I merge my technical replicates for bulk RNA seq?
RNA-seq DESeq2
updated 15 months ago by 43k • written 19 months ago by ▴ 150
4
votes
4
replies
1.0k
views
Can I perform DE analysis with Seurat if I only have one sample per condition?
single RNA Seq cell seurat
updated 19 months ago by 3.9k • written 19 months ago by ▴ 150
0
votes
0
replies
368
views
How do I get estimated gene counts for a reference that contains GFP using Kallisto?
gene ensembl tximport kallisto
20 months ago by bioinfo ▴ 150
4
votes
4
replies
1.4k
views
How can I confirm that I installed bcl2fastq correctly?
bcl2fastq linux ubuntu
20 months ago by bioinfo ▴ 150
3
votes
2
replies
624
views
Why do I get a positive gene expression with qPCR for one my genes but in with when doing bulk RNA seq I get a count of 0?
gene qpcr kallisto seq expression rna
updated 21 months ago by ★ 6.0k • written 21 months ago by ▴ 150
1
vote
3
replies
792
views
How to filter .fa file by gene_biotype
rna-seq kallisto
updated 23 months ago by 43k • written 24 months ago by ▴ 150
0
votes
7
replies
1.2k
views
6 follow
How to create kallisto index that does not include ribosomal genes
enseml kallisto RNA-seq
updated 17 months ago by 43k • written 24 months ago by ▴ 150
0
votes
0
replies
376
views
Replicates in sc-RNA seq have different amount of cells-Can I still use them for the analysis?
Cell seurat Single
updated 24 months ago by 82k • written 24 months ago by ▴ 150
2
votes
4
replies
1.0k
views
Can I use the transcripts_to_genes.txt file from kallisto for bulk RNA seq data?
kallisto
updated 2.1 years ago by 43k • written 2.1 years ago by ▴ 150
2
votes
3
replies
1.1k
views
Ensembl version for mapping and annotating genes
rna-seq kallisto
updated 23 months ago by 43k • written 2.1 years ago by ▴ 150
6
votes
2
replies
600
views
Ensembl version
ensembl kallisto
updated 17 months ago by 43k • written 2.1 years ago by ▴ 150
2
votes
2
replies
2.4k
views
Cellranger command for RNA velocity
cellranger Cell velocity RNA Single
updated 2.3 years ago by 8.9k • written 2.3 years ago by ▴ 150
4
votes
2
replies
937
views
Estimated gene counts with tximport
RNA-seq ensembl tximport kallisto
updated 23 months ago by 43k • written 2.4 years ago by ▴ 150
3
votes
3
replies
1.3k
views
Will Kallisto show a decrease in the TPM value if I have knocked out 2 of the 8 exons from a gene?
RNA-seq
updated 23 months ago by 43k • written 2.5 years ago by ▴ 150
2
votes
2
replies
1.2k
views
How to demultiplex a single indexed library on a dual indexed flow cell?
Cell Single
updated 2.5 years ago by 142k • written 2.5 years ago by ▴ 150
69 results • Page 2 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6