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0
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Comment: C: When should you left-align INDELs (and why?)
5.9 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.5k
12
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5
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5.2k
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When should you left-align INDELs (and why?)
Left align indel VCF
5.9 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.5k
0
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0
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4.9k
views
Answer: A: How do I interpret alternative allele <CN2> for structural variants in 1000 geno
5.9 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.5k
0
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1
reply
1.1k
views
Recalculate QUAL for SNPs in VCF
haplotype caller vcf SNP snv
5.9 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.5k
0
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0
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2.4k
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Comment: C: Recalculate QUAL and INFO fields for a subset of samples in a VCF
5.9 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.5k
1
vote
3
replies
2.6k
views
Count SNPs per individual FAST!
plink SNP gwas
updated 6.0 years ago by 10k • written 6.0 years ago by ★ 2.5k
0
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0
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2.6k
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Comment: C: Count SNPs per individual FAST!
6.0 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.5k
0
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0
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9.5k
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Comment: C: Random Forest returns "New factor levels not present in the training data"
6.1 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.5k
0
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2
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9.5k
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Comment: C: Random Forest returns "New factor levels not present in the training data"
6.2 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.5k
0
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0
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1.2k
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Software to Filter de novo INDELs
de novo indels software
6.2 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.5k
0
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1
reply
2.6k
views
Comment: C: How to treat heterozygous GATK calls on haploid chromosomes (sex chrom in males)
6.2 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.5k
0
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0
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8.4k
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Comment: C: ChromHMM 15 State Descriptions (Genic Enhancer)
6.2 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.5k
2
votes
0
replies
1.7k
views
Answer: A: identification of common CNVs
6.2 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.5k
0
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1
reply
1.6k
views
Print Minimum Depth from a VCF
bcftools vcf
updated 6.3 years ago by 161k • written 6.3 years ago by ★ 2.5k
0
votes
1
reply
1.5k
views
UCSC Roadmap Epigenomics Hub: "Summary" tracks
roadmap ucsc
updated 6.3 years ago by ▴ 50 • written 6.4 years ago by ★ 2.5k
0
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0
replies
5.4k
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Comment: C: bedtools coverage bed
6.3 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.5k
0
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0
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4.9k
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Comment: C: bcftools merge failed: incorrect number of PL fields
6.3 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.5k
0
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1
reply
4.9k
views
Comment: C: bcftools merge failed: incorrect number of PL fields
6.3 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.5k
6
votes
5
replies
4.9k
views
bcftools merge failed: incorrect number of PL fields
bcftools merge vcf
6.3 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.5k
0
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0
replies
2.0k
views
Answer: A: Mutation analysis on RNAseq
6.4 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.5k
0
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1
reply
2.0k
views
Comment: C: How to determine parent of origin of phased variants when all members are het
6.4 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.5k
2
votes
3
replies
2.0k
views
How to determine parent of origin of phased variants when all members are het
phase vcf
updated 6.4 years ago by 47k • written 6.4 years ago by ★ 2.5k
0
votes
0
replies
1.8k
views
Comment: C: RefSeq Transcript without a 5'UTR?
6.4 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.5k
4
votes
2
replies
1.8k
views
RefSeq Transcript without a 5'UTR?
refseq
6.4 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.5k
0
votes
3
replies
1.9k
views
Physical/Fragment Coverage for Paired-Ends: Read Length
coverage
updated 6.5 years ago by 104k • written 6.5 years ago by ★ 2.5k
3
votes
2
replies
4.6k
views
pysam + multiple_iterators = Type Error during multiprocessing
python
6.6 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.5k
2
votes
1
reply
4.6k
views
Answer: A: pysam + multiple_iterators = Type Error during multiprocessing
6.6 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.5k
6
votes
6
replies
7.3k
views
pysam: filtering reads based on flag
python samtools pysam hts
updated 17 months ago by 43k • written 8.8 years ago by ★ 2.5k
0
votes
1
reply
1.1k
views
Order mapped segements based on positions within the orginal read
long-read
6.8 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.5k
0
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1
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2.1k
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Comment: C: How to Define Structural Variation Breakpoint Positions?
7.0 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.5k
7
votes
3
replies
2.1k
views
How to Define Structural Variation Breakpoint Positions?
Structural Variation SV Breakpoint
updated 7.0 years ago by ★ 2.9k • written 7.0 years ago by ★ 2.5k
2
votes
0
replies
3.3k
views
Comment: C: Calculating Coverage Using CIGAR String
7.0 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.5k
1
vote
0
replies
1.7k
views
Comment: C: BWA MEM Supplementary Tag Position (0 or 1 based)
7.0 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.5k
6
votes
3
replies
1.7k
views
BWA MEM Supplementary Tag Position (0 or 1 based)
bwa supplementary tag
7.0 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.5k
2
votes
1
reply
3.3k
views
Comment: C: Calculating Coverage Using CIGAR String
7.0 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.5k
2
votes
1
reply
3.3k
views
Comment: C: Calculating Coverage Using CIGAR String
7.0 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.5k
22
votes
6
replies
3.3k
views
Calculating Coverage Using CIGAR String
samtools bamtools coverage
7.0 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.5k
7
votes
1
reply
1.7k
views
LAST Aligner: last-train output
last
7.0 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.5k
11
votes
1
reply
3.7k
views
Oxford Nanopore BWA MEM alignments
Oxford Nanopore long reads bwa bwa mem
updated 7.0 years ago by 47k • written 7.0 years ago by ★ 2.5k
0
votes
0
replies
3.2k
views
Machine Learning on noisy genome data. Scikit-learn python
scikit-learn python machine learning statistics
updated 7.1 years ago by 20 • written 8.7 years ago by ★ 2.5k
3
votes
1
reply
2.2k
views
Defining LoF mutations with Annovar
SNV Annovar
updated 7.2 years ago by ★ 1.4k • written 7.2 years ago by ★ 2.5k
0
votes
2
replies
2.5k
views
Hardy-Weinberg Equilbrium for multiple loci
HWE
updated 7.4 years ago by 47k • written 7.4 years ago by ★ 2.5k
0
votes
0
replies
1.5k
views
HLI (10k WGS paper) Extented Confidence Regions Positions for SNV analysis
HLI SNV SNP GiaB
7.4 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.5k
0
votes
1
reply
1.4k
views
Mendelian Inheritance Rate (CNV)
CNV Mendel Mendelian Inheritance
7.7 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.5k
0
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0
replies
6.0k
views
Comment: C: IGV: highlight both primary and supplementary alignments of a read
7.7 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.5k
8
votes
4
replies
6.0k
views
IGV: highlight both primary and supplementary alignments of a read
IGV
updated 7.7 years ago by ▴ 300 • written 7.7 years ago by ★ 2.5k
0
votes
2
replies
1.8k
views
Is it possible to get LD statistics keeping haplotype in mind?
LD PLINK R2 Haplotype SHAPEIT
7.8 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.5k
6
votes
0
replies
3.5k
views
Answer: A: Structural Variation Detection Software for very large (2 Mbp - 10 mbp) deletion
7.8 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.5k
0
votes
0
replies
2.6k
views
Combining ENCODE narrowPeak BED files across replicates
ENCODE bed
7.8 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.5k
0
votes
0
replies
13k
views
Comment: C: List all available databases for ANNOVAR
7.9 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.5k
242 results • Page 2 of 5
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