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1
vote
1
reply
364
views
Problem with Mirdeep2 and Randfold output
mirdeep2
Randfold
5 days ago by
otieno43
▴ 30
1
vote
0
replies
364
views
Answer:
Answer: Problem with Mirdeep2 and Randfold output
5 days ago by
otieno43
▴ 30
0
votes
0
replies
426
views
Comment:
Comment: UMI_extract for paired end reads of micro_RNA
6 weeks ago by
otieno43
▴ 30
1
vote
5
replies
426
views
UMI_extract for paired end reads of micro_RNA
UMI-tools
UMI
miRNA
updated 6 weeks ago by
ATpoint
82k • written 6 weeks ago by
otieno43
▴ 30
0
votes
1
reply
426
views
Comment:
Comment: UMI_extract for paired end reads of micro_RNA
6 weeks ago by
otieno43
▴ 30
0
votes
1
reply
236
views
How to use topGO tool for enrichment analysis of non-model organisms
topGO
updated 10 weeks ago by
dthorbur
★ 1.9k • written 10 weeks ago by
otieno43
▴ 30
0
votes
0
replies
233
views
Problem with mirdeep2: The mapped reference id from refdb.arf is not an id of the genome fasta file
mirdeep2
updated 3 months ago by
Ram
43k • written 3 months ago by
otieno43
▴ 30
0
votes
3
replies
559
views
Extracting list of identical items from several excel files
from
excel
items
Extract
file
updated 5 months ago by
DonPhager
• 0 • written 5 months ago by
otieno43
▴ 30
0
votes
0
replies
252
views
How to deal with mirdeep2 output "miRBase miRNAs not detected by miRDeep2"
miRNAs
miRBase
5 months ago by
otieno43
▴ 30
0
votes
0
replies
554
views
Comment:
Comment: How to use awk and grep -v option to exclude several patterns from several lines
5 months ago by
otieno43
▴ 30
2
votes
2
replies
554
views
How to use awk and grep -v option to exclude several patterns from several lines
AWK
GREP
updated 5 months ago by
zx8754
11k • written 5 months ago by
otieno43
▴ 30
0
votes
1
reply
1.0k
views
Comment:
Comment: Alignment of mirna on specific organism data from mirbase
6 months ago by
otieno43
▴ 30
0
votes
9
replies
1.0k
views
Alignment of mirna on specific organism data from mirbase
mirbase
miRNA
updated 6 months ago by
Pierre Lindenbaum
161k • written 6 months ago by
otieno43
▴ 30
0
votes
1
reply
476
views
How to obtain unmapped reads from the paired end samples using hisat2
fastq
hisat2
updated 13 months ago by
Ram
43k • written 15 months ago by
otieno43
▴ 30
0
votes
1
reply
689
views
Minimum number of UMI counts/cell
scRNAseq
updated 16 months ago by
ATpoint
82k • written 16 months ago by
otieno43
▴ 30
0
votes
0
replies
1.5k
views
Comment:
Comment: How to obtain a data frame from "SeuratObject".
16 months ago by
otieno43
▴ 30
0
votes
2
replies
1.5k
views
How to obtain a data frame from "SeuratObject".
Count
matrix
16 months ago by
otieno43
▴ 30
0
votes
0
replies
1.1k
views
Comment:
Comment: STAR alignment and HTseq-count
16 months ago by
otieno43
▴ 30
0
votes
2
replies
1.1k
views
STAR alignment and HTseq-count
and
alignment
HTseq-count
STAR
16 months ago by
otieno43
▴ 30
0
votes
1
reply
1.8k
views
Comment:
Comment: How to use RSEM to quantify genes and transcript expression from STAR outpute fi
20 months ago by
otieno43
▴ 30
0
votes
1
reply
1.8k
views
Comment:
Comment: How to use RSEM to quantify genes and transcript expression from STAR outpute fi
updated 20 months ago by
Ram
43k • written 20 months ago by
otieno43
▴ 30
1
vote
4
replies
1.8k
views
How to use RSEM to quantify genes and transcript expression from STAR outpute file (Aligned.toTranscriptome.out.bam)
RSEM
STAR
updated 20 months ago by
Ram
43k • written 20 months ago by
otieno43
▴ 30
1
vote
3
replies
866
views
How to improve alignment of scRNA-seq data in using CellRanger
scRNAseq
updated 21 months ago by
dsull
★ 5.8k • written 21 months ago by
otieno43
▴ 30
0
votes
0
replies
866
views
Comment:
Comment: How to improve alignment of scRNA-seq data in using CellRanger
21 months ago by
otieno43
▴ 30
0
votes
0
replies
562
views
Comment:
Comment: How solve solve error associated with cell clustering: quickCluster
21 months ago by
otieno43
▴ 30
0
votes
2
replies
562
views
How solve solve error associated with cell clustering: quickCluster
scRNAseq
21 months ago by
otieno43
▴ 30
0
votes
1
reply
937
views
calculateQCMetrics defunct, how to calculate the quality metrics by perCellQCMetrics
scRNAseq
updated 21 months ago by
Nitin Narwade
★ 1.6k • written 21 months ago by
otieno43
▴ 30
0
votes
0
replies
848
views
Comment:
Comment: Use of Scater for QC in scRNA-seq Analysis: How to remove cells with less than c
22 months ago by
otieno43
▴ 30
2
votes
2
replies
848
views
Use of Scater for QC in scRNA-seq Analysis: How to remove cells with less than certain number of genes supported with certain number of reads
SingleCellExperiment
22 months ago by
otieno43
▴ 30
0
votes
0
replies
2.3k
views
Comment:
Comment: Extract transcript fasta sequences using gtf
23 months ago by
otieno43
▴ 30
0
votes
1
reply
2.3k
views
Comment:
Comment: Extract transcript fasta sequences using gtf
23 months ago by
otieno43
▴ 30
2
votes
5
replies
2.3k
views
Extract transcript fasta sequences using gtf
transcript
using
fasta
gtf
sequences
updated 23 months ago by
rpolicastro
13k • written 23 months ago by
otieno43
▴ 30
3
votes
2
replies
2.7k
views
Where and How to find TruSeq Universal Adapter file: TruSeq3-PE.fa
Trimmomatic
adapters
Trimming
using
2.2 years ago by
otieno43
▴ 30
0
votes
0
replies
2.7k
views
Comment:
Comment: Where and How to find TruSeq Universal Adapter file: TruSeq3-PE.fa
2.2 years ago by
otieno43
▴ 30
0
votes
1
reply
1.5k
views
Comment:
Comment: Error in executing STAR Aligner
2.2 years ago by
otieno43
▴ 30
0
votes
1
reply
1.5k
views
Comment:
Comment: Error in executing STAR Aligner
2.2 years ago by
otieno43
▴ 30
0
votes
5
replies
1.5k
views
Error in executing STAR Aligner
Exit
code
102
updated 2.2 years ago by
Jeremy Leipzig
22k • written 2.2 years ago by
otieno43
▴ 30
37 results • Page
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