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1
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4
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1.4k
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Problem with Mirdeep2 and Randfold output
mirdeep2 Randfold
updated 11 weeks ago by • 0 • written 17 months ago by ▴ 40
1
vote
3
replies
918
views
How to plot PCA for DEGs
DEG for PCA_plot
updated 8 months ago by ▴ 190 • written 8 months ago by ▴ 40
0
votes
0
replies
918
views
Comment: Comment: How to plot PCA for DEGs
8 months ago by otieno43 ▴ 40
0
votes
0
replies
465
views
Splitting single cell data
ScRNA
9 months ago by otieno43 ▴ 40
0
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0
replies
1.5k
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Comment: Comment: How to make .fasta file
9 months ago by otieno43 ▴ 40
0
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0
replies
1.5k
views
Comment: Comment: How to make .fasta file
9 months ago by otieno43 ▴ 40
0
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0
replies
1.5k
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Comment: Comment: How to make .fasta file
9 months ago by otieno43 ▴ 40
0
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0
replies
1.5k
views
Comment: Comment: How to make .fasta file
9 months ago by otieno43 ▴ 40
3
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8
replies
1.5k
views
How to make .fasta file
.fasta file
9 months ago by otieno43 ▴ 40
0
votes
0
replies
1.1k
views
Comment: Comment: Discripancy in miRDeep2.pl and quantifier.pl outputs
9 months ago by otieno43 ▴ 40
1
vote
2
replies
1.1k
views
Discripancy in miRDeep2.pl and quantifier.pl outputs
miRDeep2
9 months ago by otieno43 ▴ 40
0
votes
1
reply
521
views
UMI tools to extract Paired end miRNA reads
paired umi_extract
updated 11 months ago by ★ 1.3k • written 11 months ago by ▴ 40
0
votes
1
reply
930
views
Comment: Comment: Error in as.unit(e2) : object is not coercible to a unit
11 months ago by otieno43 ▴ 40
0
votes
3
replies
930
views
Error in as.unit(e2) : object is not coercible to a unit
R Venn-diagram venn
updated 11 months ago by 45k • written 11 months ago by ▴ 40
0
votes
0
replies
1.9k
views
Comment: Comment: Alignment of multiple files using STARSolo
13 months ago by otieno43 ▴ 40
0
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1
reply
1.9k
views
Comment: Comment: Alignment of multiple files using STARSolo
13 months ago by otieno43 ▴ 40
1
vote
8
replies
1.9k
views
Alignment of multiple files using STARSolo
STARSolo
13 months ago by otieno43 ▴ 40
0
votes
1
reply
1.9k
views
Comment: Comment: Alignment of multiple files using STARSolo
13 months ago by otieno43 ▴ 40
0
votes
0
replies
1.9k
views
Comment: Comment: Alignment of multiple files using STARSolo
updated 13 months ago by 154k • written 13 months ago by ▴ 40
0
votes
2
replies
1.8k
views
How to use topGO tool for enrichment analysis of non-model organisms
topGO
updated 15 months ago by • 0 • written 19 months ago by ▴ 40
1
vote
0
replies
1.4k
views
Answer: Answer: Problem with Mirdeep2 and Randfold output
17 months ago by otieno43 ▴ 40
0
votes
0
replies
1.5k
views
Comment: Comment: UMI_extract for paired end reads of micro_RNA
18 months ago by otieno43 ▴ 40
1
vote
5
replies
1.5k
views
UMI_extract for paired end reads of micro_RNA
UMI-tools UMI miRNA
updated 18 months ago by 89k • written 18 months ago by ▴ 40
0
votes
1
reply
1.5k
views
Comment: Comment: UMI_extract for paired end reads of micro_RNA
18 months ago by otieno43 ▴ 40
0
votes
0
replies
517
views
Problem with mirdeep2: The mapped reference id from refdb.arf is not an id of the genome fasta file
mirdeep2
updated 21 months ago by 45k • written 21 months ago by ▴ 40
0
votes
3
replies
1.2k
views
Extracting list of identical items from several excel files
from excel items Extract file
updated 22 months ago by • 0 • written 22 months ago by ▴ 40
0
votes
0
replies
555
views
How to deal with mirdeep2 output "miRBase miRNAs not detected by miRDeep2"
miRNAs miRBase
23 months ago by otieno43 ▴ 40
0
votes
0
replies
1.5k
views
Comment: Comment: How to use awk and grep -v option to exclude several patterns from several lines
23 months ago by otieno43 ▴ 40
2
votes
2
replies
1.5k
views
How to use awk and grep -v option to exclude several patterns from several lines
AWK GREP
updated 23 months ago by 12k • written 23 months ago by ▴ 40
0
votes
1
reply
2.2k
views
Comment: Comment: Alignment of mirna on specific organism data from mirbase
23 months ago by otieno43 ▴ 40
0
votes
9
replies
2.2k
views
Alignment of mirna on specific organism data from mirbase
mirbase miRNA
updated 23 months ago by 166k • written 24 months ago by ▴ 40
0
votes
1
reply
830
views
How to obtain unmapped reads from the paired end samples using hisat2
fastq hisat2
updated 2.5 years ago by 45k • written 2.7 years ago by ▴ 40
0
votes
1
reply
1.0k
views
Minimum number of UMI counts/cell
scRNAseq
updated 2.8 years ago by 89k • written 2.8 years ago by ▴ 40
0
votes
0
replies
2.7k
views
Comment: Comment: How to obtain a data frame from "SeuratObject".
2.8 years ago by otieno43 ▴ 40
0
votes
2
replies
2.7k
views
How to obtain a data frame from "SeuratObject".
Count matrix
2.8 years ago by otieno43 ▴ 40
0
votes
0
replies
1.7k
views
Comment: Comment: STAR alignment and HTseq-count
2.8 years ago by otieno43 ▴ 40
0
votes
2
replies
1.7k
views
STAR alignment and HTseq-count
and alignment HTseq-count STAR
2.8 years ago by otieno43 ▴ 40
0
votes
1
reply
2.8k
views
Comment: Comment: How to use RSEM to quantify genes and transcript expression from STAR outpute fi
3.1 years ago by otieno43 ▴ 40
0
votes
1
reply
2.8k
views
Comment: Comment: How to use RSEM to quantify genes and transcript expression from STAR outpute fi
updated 3.1 years ago by 45k • written 3.1 years ago by ▴ 40
1
vote
4
replies
2.8k
views
How to use RSEM to quantify genes and transcript expression from STAR outpute file (Aligned.toTranscriptome.out.bam)
RSEM STAR
updated 3.1 years ago by 45k • written 3.1 years ago by ▴ 40
1
vote
3
replies
1.4k
views
How to improve alignment of scRNA-seq data in using CellRanger
scRNAseq
updated 3.2 years ago by ★ 7.7k • written 3.2 years ago by ▴ 40
0
votes
0
replies
1.4k
views
Comment: Comment: How to improve alignment of scRNA-seq data in using CellRanger
3.2 years ago by otieno43 ▴ 40
0
votes
0
replies
921
views
Comment: Comment: How solve solve error associated with cell clustering: quickCluster
3.2 years ago by otieno43 ▴ 40
0
votes
2
replies
921
views
How solve solve error associated with cell clustering: quickCluster
scRNAseq
3.2 years ago by otieno43 ▴ 40
0
votes
1
reply
1.4k
views
calculateQCMetrics defunct, how to calculate the quality metrics by perCellQCMetrics
scRNAseq
updated 3.2 years ago by ★ 1.7k • written 3.2 years ago by ▴ 40
0
votes
0
replies
1.4k
views
Comment: Comment: Use of Scater for QC in scRNA-seq Analysis: How to remove cells with less than c
3.3 years ago by otieno43 ▴ 40
2
votes
2
replies
1.4k
views
Use of Scater for QC in scRNA-seq Analysis: How to remove cells with less than certain number of genes supported with certain number of reads
SingleCellExperiment
3.3 years ago by otieno43 ▴ 40
0
votes
0
replies
3.5k
views
Comment: Comment: Extract transcript fasta sequences using gtf
3.4 years ago by otieno43 ▴ 40
0
votes
1
reply
3.5k
views
Comment: Comment: Extract transcript fasta sequences using gtf
3.4 years ago by otieno43 ▴ 40
2
votes
5
replies
3.5k
views
Extract transcript fasta sequences using gtf
transcript using fasta gtf sequences
updated 3.4 years ago by 13k • written 3.4 years ago by ▴ 40
55 results • Page 1 of 2
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