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1
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10
replies
2.4k
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Scanpy Pearson residual PCA error
python scRNA scanpy PCA
updated 4 months ago by • 0 • written 20 months ago by ▴ 70
4
votes
2
replies
828
views
GSEApy plot TypeError
gsea python DEG
updated 5 months ago by 43k • written 6 months ago by ▴ 70
1
vote
3
replies
955
views
Phyloseq sample data error: non-zero dimensions?
R object phyloseq gwas
updated 6 months ago by ▴ 390 • written 6 months ago by ▴ 70
1
vote
3
replies
815
views
pyDESeq2 Index Error?
R python pyDESeq2 DESeq2
6 months ago by Emily ▴ 70
2
votes
5
replies
1.1k
views
Trimmomatic .jar not included anymore?
trimmomatic ubuntu linux
updated 7 months ago by ▴ 100 • written 7 months ago by ▴ 70
1
vote
2
replies
1.0k
views
Cellranger pipeline 3.1.0 demultiplexing (cellranger demux)
scRNA python cellranger
13 months ago by Emily ▴ 70
0
votes
0
replies
378
views
Is dropout a big concern (or factor) when analysing single cell RNAseq?
single dropout cell scRNA
18 months ago by Emily ▴ 70
1
vote
1
reply
497
views
How to find nuclear localized genes from scRNA-seq UMI data?
scanpy anndata scRNA python rna
updated 18 months ago by 4.6k • written 18 months ago by ▴ 70
1
vote
2
replies
659
views
Is there a tutorial/ demo on single cell nuclei-seq analysis
cell seq single sNuc-seq nuclei-seq sn-RNA
19 months ago by Emily ▴ 70
1
vote
1
reply
1.8k
views
How to subset anndata by clusters and their gene markers?
anndata python scanpy scrna scvi
updated 19 months ago by ▴ 610 • written 19 months ago by ▴ 70
1
vote
2
replies
4.3k
views
How to subset anndata based on variable
python scRNA AnnData scanpy pandas
20 months ago by Emily ▴ 70
3
votes
2
replies
2.5k
views
How to adjust y-axis scale on scanpy scatter plot
scRNA seq scanpy data RNA
20 months ago by Emily ▴ 70
1
vote
2
replies
848
views
Does Cellranger filter out doublet?
cellranger scRNA
20 months ago by Emily ▴ 70
6
votes
12
replies
2.2k
views
SRA not splitting when trying to download fastq
SRA FASTQ Linux scRNA
updated 21 months ago by ▴ 390 • written 21 months ago by ▴ 70
3
votes
4
replies
947
views
Does Seurat have Poisson normalization method?
R scRNA seurat
21 months ago by Emily ▴ 70
0
votes
5
replies
2.4k
views
scRNA read count is in csv, not '.h5ad' format, do I need to convert it into Ann Data?
RNA scRNA single-cell Scanpy
21 months ago by Emily ▴ 70
1
vote
1
reply
483
views
Looking for Bulk RNA seq PBMC data
rba genome rna-seq
updated 22 months ago by 43k • written 23 months ago by ▴ 70
2
votes
2
replies
1.1k
views
In need of help: Error in open.connection (file), opening tsv.gz & mtx.gz files
dataframe Python R Studio
updated 23 months ago by 21k • written 23 months ago by ▴ 70
1
vote
11
replies
1.4k
views
looking for human PBMC bulk cell seq data and scRNA data
bulk RNA single-cell scRNA data
23 months ago by Emily ▴ 70
1
vote
1
reply
1.3k
views
how to combine barcodes features matrix files into combined matrix
R data
updated 24 months ago by 82k • written 24 months ago by ▴ 70
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