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1
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1
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167
views
isoform compostion (psi) question
composition isoform
updated 11 days ago by 16k • written 12 days ago by ▴ 30
0
votes
2
replies
222
views
seqtk subsample fastq file question
seqtk subsample
updated 20 days ago by • 0 • written 20 days ago by ▴ 30
0
votes
0
replies
222
views
Comment: Comment: seqtk subsample fastq file question
20 days ago by Jjbox ▴ 30
2
votes
1
reply
284
views
STAR paired end mode question
STAR
updated 24 days ago by 68k • written 24 days ago by ▴ 30
1
vote
1
reply
258
views
qtl, eqtl, sqtl
eqtl qtl sqtl
updated 24 days ago by ▴ 290 • written 24 days ago by ▴ 30
0
votes
1
reply
221
views
Mean read length from a fastq file
fastq file awk samtools
updated 26 days ago by 125k • written 26 days ago by ▴ 30
0
votes
1
reply
301
views
Comment: Comment: Subseq bam file
8 weeks ago by Jjbox ▴ 30
3
votes
3
replies
301
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Subseq bam file
bam file subseq
updated 8 weeks ago by 125k • written 8 weeks ago by ▴ 30
0
votes
1
reply
727
views
Comment: Comment: Mean read length from bam file
8 weeks ago by Jjbox ▴ 30
0
votes
1
reply
727
views
Comment: Comment: Mean read length from bam file
8 weeks ago by Jjbox ▴ 30
0
votes
1
reply
727
views
Comment: Comment: Mean read length from bam file
8 weeks ago by Jjbox ▴ 30
5
votes
11
replies
727
views
Mean read length from bam file
bam samtools
updated 8 weeks ago by 10k • written 8 weeks ago by ▴ 30
0
votes
1
reply
727
views
Comment: Comment: Mean read length from bam file
8 weeks ago by Jjbox ▴ 30
4
votes
1
reply
278
views
Genome annotation: convert gtf to gff3 file
gff3 gtf
updated 11 weeks ago by ▴ 220 • written 11 weeks ago by ▴ 30
0
votes
0
replies
159
views
Count splice junction reads from BED, bam, gtf file
splice reads junction
12 weeks ago by Jjbox ▴ 30
0
votes
0
replies
269
views
Comment: Comment: bed file question! [extract read numbers from bed file]
12 weeks ago by Jjbox ▴ 30
0
votes
2
replies
269
views
bed file question! [extract read numbers from bed file]
BED file read numbers
12 weeks ago by Jjbox ▴ 30
0
votes
0
replies
147
views
Count read numbers of splice junctions from BED file
BED file read numbers
3 months ago by Jjbox ▴ 30
0
votes
1
reply
421
views
Comment: Comment: Tools for fasterq file?
3 months ago by Jjbox ▴ 30
1
vote
4
replies
421
views
Tools for fasterq file?
trimming
updated 12 weeks ago by ▴ 20 • written 3 months ago by ▴ 30
0
votes
0
replies
380
views
Comment: Comment: SRA: realistic data from reference transcript
3 months ago by Jjbox ▴ 30
0
votes
1
reply
380
views
Comment: Comment: SRA: realistic data from reference transcript
3 months ago by Jjbox ▴ 30
0
votes
4
replies
380
views
SRA: realistic data from reference transcript
reference SRA transcript
3 months ago by Jjbox ▴ 30
0
votes
0
replies
173
views
Realistic RNA-seq using Polyester + Differences between Hexamer bias and positional bias?
in read polyester bias short
3 months ago by Jjbox ▴ 30
1
vote
0
replies
706
views
Comment: Comment: Tools to check the length of isoforms in reference transcript
3 months ago by Jjbox ▴ 30
0
votes
1
reply
706
views
Comment: Comment: Tools to check the length of isoforms in reference transcript
3 months ago by Jjbox ▴ 30
0
votes
2
replies
706
views
Comment: Comment: Tools to check the length of isoforms in reference transcript
3 months ago by Jjbox ▴ 30
0
votes
1
reply
706
views
Comment: Comment: Tools to check the length of isoforms in reference transcript
3 months ago by Jjbox ▴ 30
7
votes
9
replies
706
views
Tools to check the length of isoforms in reference transcript
transcript histogram isoform
3 months ago by Jjbox ▴ 30
0
votes
1
reply
304
views
Comment: Comment: Tools for read length distribution
3 months ago by Jjbox ▴ 30
2
votes
3
replies
304
views
Tools for read length distribution
read-length
updated 3 months ago by 125k • written 3 months ago by ▴ 30
0
votes
0
replies
385
views
Comment: Comment: Tools for generating realistic rna-seq reads from reference transcriptome
3 months ago by Jjbox ▴ 30
1
vote
4
replies
385
views
Tools for generating realistic rna-seq reads from reference transcriptome
reference reads rna-seq transcriptome
3 months ago by Jjbox ▴ 30
0
votes
0
replies
385
views
Comment: Comment: Tools for generating realistic rna-seq reads from reference transcriptome
4 months ago by Jjbox ▴ 30
1
vote
2
replies
244
views
RefSeq Transcript vs Reference Genome sequence
Transcript RefSeq
updated 4 months ago by ▴ 740 • written 4 months ago by ▴ 30
0
votes
1
reply
528
views
Comment: Comment: Order of reads in Long read FASTQ file
4 months ago by Jjbox ▴ 30
0
votes
1
reply
528
views
Comment: Comment: Order of reads in Long read FASTQ file
4 months ago by Jjbox ▴ 30
0
votes
5
replies
528
views
Order of reads in Long read FASTQ file
fastq seqtk rna-seq
updated 4 months ago by 125k • written 4 months ago by ▴ 30
0
votes
0
replies
138
views
GTEx long read data
gtex long read short
4 months ago by Jjbox ▴ 30
1
vote
1
reply
303
views
unsolved questions in RNA
isoform rna
updated 4 months ago by 68k • written 4 months ago by ▴ 30
0
votes
1
reply
183
views
How to see maximal read length / average read length using STAR
STAR
updated 4 months ago by 96k • written 4 months ago by ▴ 30
0
votes
0
replies
160
views
Long read RNA # of reads interpretation help
nanopore oxford PacBio
4 months ago by Jjbox ▴ 30
0
votes
0
replies
193
views
Coverage definition between DNA vs RNA
coverage dna rna
5 months ago by Jjbox ▴ 30
0
votes
0
replies
463
views
Comment: Comment: How to calculate coverage in short-reads and long-reads in RNA-Seq?
5 months ago by Jjbox ▴ 30
0
votes
1
reply
288
views
Tools for generating realistic rna-seq reads
reads RNA-seq
updated 4 months ago by 37k • written 5 months ago by ▴ 30
0
votes
3
replies
463
views
How to calculate coverage in short-reads and long-reads in RNA-Seq?
short long read rna-seq
5 months ago by Jjbox ▴ 30
46 results • Page 1 of 1
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