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intron retention length detected by short read > long read
intron-retention
updated 19 days ago by
LChart
2.2k • written 19 days ago by
Jjbox
▴ 40
0
votes
0
replies
401
views
Comment:
Comment: salmon output interpretation
20 days ago by
Jjbox
▴ 40
4
votes
6
replies
401
views
salmon output interpretation
salmon
updated 20 days ago by
GenoMax
127k • written 20 days ago by
Jjbox
▴ 40
0
votes
0
replies
401
views
Comment:
Comment: salmon output interpretation
updated 20 days ago by
GenoMax
127k • written 20 days ago by
Jjbox
▴ 40
0
votes
1
reply
401
views
Comment:
Comment: salmon output interpretation
20 days ago by
Jjbox
▴ 40
9
votes
4
replies
377
views
long read + salmon? (transcript abundance)
salmon
read
long
updated 22 days ago by
ATpoint
70k • written 23 days ago by
Jjbox
▴ 40
0
votes
0
replies
267
views
Comment:
Comment: Salmon TPM calculation constant
26 days ago by
Jjbox
▴ 40
3
votes
3
replies
267
views
Salmon TPM calculation constant
salmon
TPM
26 days ago by
Jjbox
▴ 40
0
votes
0
replies
240
views
Intron retention gene expression using salmon
salmon
intron-retention
updated 4 weeks ago by
Ram
38k • written 4 weeks ago by
Jjbox
▴ 40
1
vote
1
reply
226
views
isoform compostion (psi) question
composition
isoform
updated 8 weeks ago by
i.sudbery
16k • written 8 weeks ago by
Jjbox
▴ 40
0
votes
2
replies
292
views
seqtk subsample fastq file question
seqtk
subsample
updated 9 weeks ago by
michael
• 0 • written 9 weeks ago by
Jjbox
▴ 40
0
votes
0
replies
292
views
Comment:
Comment: seqtk subsample fastq file question
9 weeks ago by
Jjbox
▴ 40
2
votes
1
reply
314
views
STAR paired end mode question
STAR
updated 10 weeks ago by
ATpoint
70k • written 10 weeks ago by
Jjbox
▴ 40
1
vote
1
reply
298
views
qtl, eqtl, sqtl
eqtl
qtl
sqtl
updated 10 weeks ago by
acvill
▴ 290 • written 10 weeks ago by
Jjbox
▴ 40
0
votes
1
reply
257
views
Mean read length from a fastq file
fastq
samtools
awk
updated 6 days ago by
Ram
38k • written 10 weeks ago by
Jjbox
▴ 40
0
votes
1
reply
341
views
Comment:
Comment: Subseq bam file
3 months ago by
Jjbox
▴ 40
3
votes
3
replies
341
views
Subseq bam file
bam
subseq
updated 6 days ago by
Ram
38k • written 3 months ago by
Jjbox
▴ 40
0
votes
1
reply
808
views
Comment:
Comment: Mean read length from bam file
3 months ago by
Jjbox
▴ 40
0
votes
1
reply
808
views
Comment:
Comment: Mean read length from bam file
3 months ago by
Jjbox
▴ 40
0
votes
1
reply
808
views
Comment:
Comment: Mean read length from bam file
3 months ago by
Jjbox
▴ 40
5
votes
11
replies
808
views
Mean read length from bam file
bam
samtools
updated 3 months ago by
seidel
11k • written 3 months ago by
Jjbox
▴ 40
0
votes
1
reply
808
views
Comment:
Comment: Mean read length from bam file
3 months ago by
Jjbox
▴ 40
4
votes
1
reply
424
views
Genome annotation: convert gtf to gff3 file
gff3
gtf
updated 4 months ago by
LDT
▴ 220 • written 4 months ago by
Jjbox
▴ 40
0
votes
0
replies
181
views
Count splice junction reads from BED, bam, gtf file
splice
reads
junction
4 months ago by
Jjbox
▴ 40
0
votes
0
replies
300
views
Comment:
Comment: bed file question! [extract read numbers from bed file]
4 months ago by
Jjbox
▴ 40
0
votes
2
replies
300
views
bed file question! [extract read numbers from bed file]
BED
updated 6 days ago by
Ram
38k • written 4 months ago by
Jjbox
▴ 40
0
votes
0
replies
170
views
Count read numbers of splice junctions from BED file
BED
updated 6 days ago by
Ram
38k • written 4 months ago by
Jjbox
▴ 40
0
votes
1
reply
473
views
Comment:
Comment: Tools for fasterq file?
4 months ago by
Jjbox
▴ 40
1
vote
4
replies
473
views
Tools for fasterq file?
trimming
updated 4 months ago by
NikhilP
▴ 20 • written 4 months ago by
Jjbox
▴ 40
0
votes
0
replies
409
views
Comment:
Comment: SRA: realistic data from reference transcript
4 months ago by
Jjbox
▴ 40
0
votes
1
reply
409
views
Comment:
Comment: SRA: realistic data from reference transcript
4 months ago by
Jjbox
▴ 40
0
votes
4
replies
409
views
SRA: realistic data from reference transcript
reference
SRA
transcript
4 months ago by
Jjbox
▴ 40
0
votes
0
replies
189
views
Realistic RNA-seq using Polyester + Differences between Hexamer bias and positional bias?
in
read
polyester
bias
short
5 months ago by
Jjbox
▴ 40
1
vote
0
replies
770
views
Comment:
Comment: Tools to check the length of isoforms in reference transcript
5 months ago by
Jjbox
▴ 40
0
votes
1
reply
770
views
Comment:
Comment: Tools to check the length of isoforms in reference transcript
5 months ago by
Jjbox
▴ 40
0
votes
2
replies
770
views
Comment:
Comment: Tools to check the length of isoforms in reference transcript
5 months ago by
Jjbox
▴ 40
0
votes
1
reply
770
views
Comment:
Comment: Tools to check the length of isoforms in reference transcript
5 months ago by
Jjbox
▴ 40
7
votes
9
replies
770
views
Tools to check the length of isoforms in reference transcript
transcript
histogram
isoform
5 months ago by
Jjbox
▴ 40
0
votes
1
reply
341
views
Comment:
Comment: Tools for read length distribution
5 months ago by
Jjbox
▴ 40
2
votes
3
replies
341
views
Tools for read length distribution
read-length
updated 5 months ago by
GenoMax
127k • written 5 months ago by
Jjbox
▴ 40
0
votes
0
replies
412
views
Comment:
Comment: Tools for generating realistic rna-seq reads from reference transcriptome
5 months ago by
Jjbox
▴ 40
1
vote
4
replies
412
views
Tools for generating realistic rna-seq reads from reference transcriptome
reference
reads
rna-seq
transcriptome
5 months ago by
Jjbox
▴ 40
0
votes
0
replies
412
views
Comment:
Comment: Tools for generating realistic rna-seq reads from reference transcriptome
5 months ago by
Jjbox
▴ 40
1
vote
2
replies
267
views
RefSeq Transcript vs Reference Genome sequence
Transcript
RefSeq
updated 5 months ago by
Jeremy
▴ 770 • written 5 months ago by
Jjbox
▴ 40
0
votes
1
reply
571
views
Comment:
Comment: Order of reads in Long read FASTQ file
5 months ago by
Jjbox
▴ 40
0
votes
1
reply
571
views
Comment:
Comment: Order of reads in Long read FASTQ file
5 months ago by
Jjbox
▴ 40
0
votes
5
replies
571
views
Order of reads in Long read FASTQ file
fastq
seqtk
rna-seq
updated 5 months ago by
GenoMax
127k • written 5 months ago by
Jjbox
▴ 40
0
votes
0
replies
159
views
GTEx long read data
gtex
long
read
short
5 months ago by
Jjbox
▴ 40
1
vote
1
reply
323
views
unsolved questions in RNA
isoform
rna
updated 6 months ago by
ATpoint
70k • written 6 months ago by
Jjbox
▴ 40
0
votes
1
reply
204
views
How to see maximal read length / average read length using STAR
STAR
updated 6 months ago by
Istvan Albert
97k • written 6 months ago by
Jjbox
▴ 40
55 results • Page
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