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Showing :
questions
14
votes
4
replies
16k
views
convert gene name to entrez id
gene conversion
updated 7.8 years ago by
Newgene
▴ 370 • written 8.2 years ago by
bioguy24
▴ 230
0
votes
2
replies
1.6k
views
using mysql on ucsc table browser
ngs
7.8 years ago by
bioguy24
▴ 230
3
votes
2
replies
2.0k
views
phred score from vcf quality
ngs
updated 7.9 years ago by
Matt Shirley
10k • written 7.9 years ago by
bioguy24
▴ 230
1
vote
23
replies
5.1k
views
error in samfile header
picard
updated 16 months ago by
Ram
43k • written 8.9 years ago by
bioguy24
▴ 230
0
votes
1
reply
1.5k
views
calculate nucleotide forward and reverse reads from vcf
vcf
8.0 years ago by
bioguy24
▴ 230
1
vote
2
replies
1.8k
views
current release of bam-readcount version
ngs
bam-readcount
updated 8.0 years ago by
John
13k • written 8.0 years ago by
bioguy24
▴ 230
0
votes
5
replies
1.4k
views
count indel by length in human reference
ngs
updated 8.0 years ago by
Sean Davis
26k • written 8.0 years ago by
bioguy24
▴ 230
0
votes
2
replies
1.2k
views
current version of sowtware
software
updated 8.1 years ago by
Madelaine Gogol
5.3k • written 8.1 years ago by
bioguy24
▴ 230
4
votes
6
replies
1.9k
views
6 follow
chromosomal cordinates of a list of genes
genome browser
updated 8.2 years ago by
Giovanni M Dall'Olio
28k • written 8.2 years ago by
bioguy24
▴ 230
2
votes
3
replies
2.2k
views
query using mysql on ucsc table browser
mysql
next-gen
sequence
ucsc
updated 21 months ago by
Ram
43k • written 8.3 years ago by
bioguy24
▴ 230
5
votes
6
replies
2.8k
views
bash loop to count variants using vcftools
vcftools
bash
updated 21 months ago by
Ram
43k • written 8.4 years ago by
bioguy24
▴ 230
3
votes
9
replies
3.5k
views
Need recommendation for a virtual machine or linux cluster for ngs analysis
ngs
updated 13 months ago by
Ram
43k • written 8.4 years ago by
bioguy24
▴ 230
0
votes
1
reply
2.2k
views
fastq or bam file for additional alignment
ngs
alignment
updated 13 months ago by
Ram
43k • written 8.6 years ago by
bioguy24
▴ 230
0
votes
4
replies
2.8k
views
picard tools error in strand field
picard-tools
updated 20 months ago by
Ram
43k • written 8.5 years ago by
bioguy24
▴ 230
1
vote
2
replies
3.2k
views
picard error version 1.139 on ubuntu 14.04
picard
updated 8.5 years ago by
h.mon
35k • written 8.5 years ago by
bioguy24
▴ 230
2
votes
4
replies
1.4k
views
bedops overlap output
bedops
updated 20 months ago by
Ram
43k • written 8.6 years ago by
bioguy24
▴ 230
0
votes
3
replies
2.6k
views
coverageBed with -g option ?
bedtools
updated 20 months ago by
Ram
43k • written 8.6 years ago by
bioguy24
▴ 230
9
votes
10
replies
4.7k
views
coverage bed error but produces output file
ngs
sort
bedtools
updated 20 months ago by
Ram
43k • written 8.6 years ago by
bioguy24
▴ 230
0
votes
4
replies
3.2k
views
run picard on all bam files in directory
bam
ngs
picard
updated 19 months ago by
Ram
43k • written 8.6 years ago by
bioguy24
▴ 230
5
votes
6
replies
1.9k
views
correct way to add path to ubuntu 14.04.3
ngs
updated 19 months ago by
Ram
43k • written 8.6 years ago by
bioguy24
▴ 230
0
votes
12
replies
6.9k
views
aligned or unaligned bam file
ngs
updated 19 months ago by
Ram
43k • written 8.6 years ago by
bioguy24
▴ 230
9
votes
9
replies
5.5k
views
ion torrent alignment software
ngs
alignment
updated 19 months ago by
Ram
43k • written 8.6 years ago by
bioguy24
▴ 230
3
votes
10
replies
2.3k
views
samtools-1.2 re-header command on ubuntu 14.04.3
samtools
updated 19 months ago by
Ram
43k • written 8.7 years ago by
bioguy24
▴ 230
1
vote
4
replies
3.5k
views
vcftools tools install on ubuntu 14.04
vcftools
updated 8.7 years ago by
kloetzl
★ 1.1k • written 8.7 years ago by
bioguy24
▴ 230
1
vote
4
replies
3.0k
views
unalign bam and convert to fastq
bowtie2
updated 18 months ago by
Ram
43k • written 8.7 years ago by
bioguy24
▴ 230
0
votes
6
replies
5.2k
views
bowtie2 install on ubuntu
bowtie2
updated 18 months ago by
Ram
43k • written 8.7 years ago by
bioguy24
▴ 230
0
votes
0
replies
1.1k
views
phenotype to associated genes
next-gen
updated 18 months ago by
Ram
43k • written 8.8 years ago by
bioguy24
▴ 230
0
votes
1
reply
983
views
bedmap to output one instance of gene
bedops
updated 18 months ago by
Ram
43k • written 8.8 years ago by
bioguy24
▴ 230
0
votes
9
replies
2.4k
views
bedmap to match gene names in bed
bedops
updated 18 months ago by
Ram
43k • written 8.8 years ago by
bioguy24
▴ 230
1
vote
4
replies
1.3k
views
bedmap output on one line
bedops
updated 18 months ago by
Ram
43k • written 8.8 years ago by
bioguy24
▴ 230
1
vote
8
replies
3.3k
views
interval file for picard
picard
updated 16 months ago by
Ram
43k • written 8.8 years ago by
bioguy24
▴ 230
1
vote
2
replies
1.9k
views
bedops command to map bed to genes
bedops
updated 17 months ago by
Ram
43k • written 8.8 years ago by
bioguy24
▴ 230
0
votes
9
replies
2.8k
views
overlap gene and exon with bed file
bedops
updated 17 months ago by
Ram
43k • written 8.8 years ago by
bioguy24
▴ 230
0
votes
0
replies
2.5k
views
gene and exon number from bed file
bedops
updated 18 months ago by
Ram
43k • written 8.8 years ago by
bioguy24
▴ 230
4
votes
3
replies
3.4k
views
add strand info to a bed file
picard
updated 16 months ago by
Ram
43k • written 8.9 years ago by
bioguy24
▴ 230
1
vote
5
replies
2.3k
views
calculate coverage per bait
exome-sequencing
coverage
updated 16 months ago by
Ram
43k • written 8.9 years ago by
bioguy24
▴ 230
0
votes
1
reply
1.8k
views
discordant results between bedTools and awk
next-gen
awk
bedtools
updated 16 months ago by
Ram
43k • written 8.9 years ago by
bioguy24
▴ 230
2
votes
4
replies
3.2k
views
targeted bed file average coverage
next-gen
exome
updated 16 months ago by
Ram
43k • written 8.9 years ago by
bioguy24
▴ 230
6
votes
1
reply
2.5k
views
splice site mutations
next-gen
database
updated 14 months ago by
Ram
43k • written 9.9 years ago by
bioguy24
▴ 230
89 results • Page
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