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How to install BioNano Access tool to visualize Bionano optical map outputs?
bionano genome optical-map
updated 3 months ago by ▴ 110 • written 17 months ago by • 0
0
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0
replies
514
views
How are .cmap files generated using Bionano?
bionano map genome assemblies
17 months ago by BioinfoBee • 0
4
votes
2
replies
3.9k
views
How to convert SAM/BAM file to GTF/GFF file?
GTF SAM BAM GFF minimap2
updated 19 months ago by ▴ 140 • written 2.6 years ago by • 0
0
votes
0
replies
447
views
How to identify structural variants (SV) breakpoints using alignment PAF file?
SV minimap2 genome alignment
22 months ago by BioinfoBee • 0
9
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5
replies
3.3k
views
How to convert hard-masked genome to soft-masked?
repeatmasking repeats
updated 2.1 years ago by ▴ 140 • written 2.7 years ago by • 0
0
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1
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2.2k
views
Comment: Comment: How to check RNAseq support for annotated genes?
2.1 years ago by BioinfoBee • 0
0
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0
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2.2k
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Comment: Comment: How to check RNAseq support for annotated genes?
2.2 years ago by BioinfoBee • 0
0
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1
reply
2.2k
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Comment: Comment: How to check RNAseq support for annotated genes?
2.2 years ago by BioinfoBee • 0
3
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7
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2.2k
views
How to check RNAseq support for annotated genes?
gene RNA-seq annotation
updated 2.1 years ago by 56k • written 2.2 years ago by • 0
0
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1
reply
2.2k
views
Comment: Comment: How to best represent three biological replicates of single tissue sample?
2.3 years ago by BioinfoBee • 0
0
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1
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2.2k
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Comment: Comment: How to best represent three biological replicates of single tissue sample?
2.3 years ago by BioinfoBee • 0
3
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5
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2.2k
views
How to best represent three biological replicates of single tissue sample?
biological-replicates RNA-Seq
updated 2.3 years ago by 10k • written 2.3 years ago by • 0
0
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0
replies
3.0k
views
Comment: Comment: How to filter gene counts by keeping genes that have a count of of 10 or more in
2.4 years ago by BioinfoBee • 0
0
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1
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3.0k
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Comment: Comment: How to filter gene counts by keeps genes that have a gene count of of 10 or more
2.4 years ago by BioinfoBee • 0
3
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5
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3.0k
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How to filter gene counts by keeping genes that have a count of of 10 or more in at least three samples
filtering counts gene RNA-Seq
2.4 years ago by BioinfoBee • 0
0
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0
replies
567
views
How to generate heat_map plot from tspex?
tissue-specificity txpex
updated 2.4 years ago by 154k • written 2.4 years ago by • 0
4
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7
replies
2.1k
views
How to sort gff3 according to chromosome order?
gff3 sort
updated 2.5 years ago by 166k • written 2.5 years ago by • 0
0
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2
replies
2.1k
views
Comment: Comment: How to sort gff3 according to chromosome order?
2.5 years ago by BioinfoBee • 0
0
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1
reply
2.1k
views
Comment: Comment: How to sort gff3 according to chromosome order?
2.5 years ago by BioinfoBee • 0
0
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0
replies
3.9k
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Comment: Comment: How to extract summary statistics from GFF3 /GTF file?
2.5 years ago by BioinfoBee • 0
3
votes
9
replies
3.9k
views
How to extract summary statistics from GFF3 /GTF file?
gff3 gene-annotation summary-statistics
updated 2.5 years ago by 9.3k • written 2.5 years ago by • 0
0
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0
replies
1.1k
views
Comment: Comment: How to retain proteins with both start and stop codons, and remove those with in
2.6 years ago by BioinfoBee • 0
1
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2
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1.1k
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How to retain proteins with both start and stop codons, and remove those with internal stop codons from FASTA file ?
gene annotation
2.6 years ago by BioinfoBee • 0
8
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10
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3.5k
views
How to convert GTF output of TSEBRA to gff3 file as an input for EVM ?
gtf braker2 gff3 tsebra
updated 2.4 years ago by 45k • written 2.6 years ago by • 0
0
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0
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3.5k
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Comment: Comment: How to convert GTF output of TSEBRA to gff3 file as an input for EVM ?
2.6 years ago by BioinfoBee • 0
0
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0
replies
3.5k
views
Comment: Comment: How to convert GTF output of TSEBRA to gff3 file as an input for EVM ?
2.6 years ago by BioinfoBee • 0
0
votes
2
replies
3.5k
views
Comment: Comment: How to convert GTF output of TSEBRA to gff3 file as an input for EVM ?
2.6 years ago by BioinfoBee • 0
0
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1
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3.5k
views
Comment: Comment: How to convert GTF output of TSEBRA to gff3 file as an input for EVM ?
2.6 years ago by BioinfoBee • 0
0
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0
replies
2.1k
views
Comment: Comment: How to generate GFF/GTF file from cDNA transcipts FASTA file?
2.6 years ago by BioinfoBee • 0
0
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1
reply
2.1k
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Comment: Comment: How to generate GFF/GTF file from cDNA transcipts FASTA file?
2.6 years ago by BioinfoBee • 0
0
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1
reply
13k
views
Comment: Comment: How can I easily remove overlapping transcripts, keeping only longest transcript
2.7 years ago by BioinfoBee • 0
4
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5
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2.1k
views
How to generate GFF/GTF file from cDNA transcipts FASTA file?
gff3 gtf transcript cDNA
2.6 years ago by BioinfoBee • 0
0
votes
1
reply
13k
views
Comment: Comment: How can I easily remove overlapping transcripts, keeping only longest transcript
2.7 years ago by BioinfoBee • 0
0
votes
1
reply
13k
views
Comment: Comment: How can I easily remove overlapping transcripts, keeping only longest transcript
2.7 years ago by BioinfoBee • 0
0
votes
1
reply
13k
views
Comment: Comment: How can I easily remove overlapping transcripts, keeping only longest transcript
2.7 years ago by BioinfoBee • 0
0
votes
1
reply
13k
views
Comment: Comment: How can I easily remove overlapping transcripts, keeping only longest transcript
2.7 years ago by BioinfoBee • 0
0
votes
1
reply
3.3k
views
Comment: Comment: How to convert hard-masked genome to soft-masked?
2.7 years ago by BioinfoBee • 0
0
votes
1
reply
2.4k
views
Comment: Comment: Repeat masking for genome annotation
2.7 years ago by BioinfoBee • 0
0
votes
0
replies
679
views
How to merge TransDecoder gff3 with BRAKER gff3?
BRAKER Transdecoder gene-annotation gff3 genome
2.7 years ago by BioinfoBee • 0
0
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1
reply
2.4k
views
Comment: Comment: Repeat masking for genome annotation
2.8 years ago by BioinfoBee • 0
0
votes
1
reply
13k
views
Comment: Comment: How can I easily remove overlapping transcripts, keeping only longest transcript
2.8 years ago by BioinfoBee • 0
0
votes
1
reply
13k
views
Comment: Comment: How can I easily remove overlapping transcripts, keeping only longest transcript
2.8 years ago by BioinfoBee • 0
0
votes
1
reply
13k
views
Comment: Comment: How can I easily remove overlapping transcripts, keeping only longest transcript
2.8 years ago by BioinfoBee • 0
0
votes
2
replies
6.3k
views
Comment: Comment: Sort gff3 on chromosome, position and then featuretype (gene, mRNA, exon, CDS)
2.8 years ago by BioinfoBee • 0
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