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68
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merging diploid and tetraploid vcfs
bcftools diploid tetraploid
updated 7 hours ago by 7.3k • written 8 hours ago by ▴ 60
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166
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which column to consider for venn from emapper.annotations file
emapper
14 days ago by analyst ▴ 60
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232
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Comment: Comment: structural variation calling through delly is stuck at Split-read assembly step
15 days ago by analyst ▴ 60
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2
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232
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structural variation calling through delly is stuck at Split-read assembly step
short reads assembly
15 days ago by analyst ▴ 60
0
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1
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309
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Comment: Comment: low alignment rate for RNA-Seq data
20 days ago by analyst ▴ 60
1
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3
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309
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low alignment rate for RNA-Seq data
rice low alignment RNA-Seq
updated 19 days ago by 150k • written 23 days ago by ▴ 60
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333
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Comment: Comment: filtering heterozygous genotypes
27 days ago by analyst ▴ 60
0
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2
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333
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filtering heterozygous genotypes
bcftools heterozygous
27 days ago by analyst ▴ 60
5
votes
2
replies
711
views
java out of memory error through beagle for imputation
beagle imputation java
updated 5 weeks ago by 45k • written 10 months ago by ▴ 60
3
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1
reply
353
views
Abyss output scaffolds.fa file contains kmer sized scaffolds
scaffolds abyss
updated 6 weeks ago by 15k • written 7 weeks ago by ▴ 60
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0
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313
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Comment: Comment: Setting ploidy level in gatk
7 weeks ago by analyst ▴ 60
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0
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708
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Comment: Comment: constructing de novo assembly of plant short reads
7 weeks ago by analyst ▴ 60
2
votes
2
replies
313
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Setting ploidy level in gatk
ploidy
7 weeks ago by analyst ▴ 60
0
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0
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708
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Comment: Comment: constructing de novo assembly of plant short reads
8 weeks ago by analyst ▴ 60
0
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1
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708
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Comment: Comment: constructing de novo assembly of plant short reads
8 weeks ago by analyst ▴ 60
0
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0
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708
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Comment: Comment: constructing de novo assembly of plant short reads
8 weeks ago by analyst ▴ 60
0
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1
reply
708
views
Comment: Comment: constructing de novo assembly of plant short reads
8 weeks ago by analyst ▴ 60
0
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1
reply
708
views
Comment: Comment: constructing de novo assembly of plant short reads
8 weeks ago by analyst ▴ 60
5
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10
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708
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constructing de novo assembly of plant short reads
short reads assembly plants
7 weeks ago by analyst ▴ 60
0
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1
reply
493
views
making a circos for snps indels and SV
circos
updated 10 weeks ago by 6.1k • written 11 weeks ago by ▴ 60
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0
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267
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Process localizer (1) terminated with an error exit status (1) predector error
predector fungus
3 months ago by analyst ▴ 60
0
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0
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17k
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Comment: Comment: Convert .gbff (gene bank flat format) to gff3, gtf
3 months ago by analyst ▴ 60
0
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2
replies
817
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Comment: Comment: Can we construct single pangenome for different crops
3 months ago by analyst ▴ 60
0
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1
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817
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Comment: Comment: Can we construct single pangenome for different crops
3 months ago by analyst ▴ 60
0
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1
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817
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Comment: Comment: Can we construct single pangenome for different crops
3 months ago by analyst ▴ 60
0
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1
reply
817
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Comment: Comment: Can we construct single pangenome for different crops
3 months ago by analyst ▴ 60
8
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9
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817
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Can we construct single pangenome for different crops
pangenome different crops
updated 3 months ago by ▴ 440 • written 3 months ago by ▴ 60
1
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2
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405
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linear pangenome for crops
pangenome linear
updated 3 months ago by ▴ 20 • written 3 months ago by ▴ 60
0
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1
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505
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Comment: Comment: predector exit status (137)
updated 3 months ago by 150k • written 3 months ago by ▴ 60
0
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1
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505
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Comment: Comment: predector exit status (137)
3 months ago by analyst ▴ 60
0
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4
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505
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predector exit status (137)
predector
updated 3 months ago by 150k • written 3 months ago by ▴ 60
0
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0
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192
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No gene and PAV has overlap warning while constructing pangenome
pangenome
4 months ago by analyst ▴ 60
0
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0
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276
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How to create a flower plot for pangenome data
flowerplot pangenome
4 months ago by analyst ▴ 60
0
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1
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776
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Comment: Comment: constructing gene-based pangenome from orthofinder output file
5 months ago by analyst ▴ 60
0
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1
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776
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Comment: Comment: constructing gene-based pangenome from orthofinder output file
5 months ago by analyst ▴ 60
6
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5
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776
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constructing gene-based pangenome from orthofinder output file
orthofinder pan-genome
updated 4 months ago by ★ 2.9k • written 5 months ago by ▴ 60
0
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0
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659
views
Comment: Comment: vcf file filtration w.r.t. missingness per snps and unmapped snps
6 months ago by analyst ▴ 60
0
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0
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659
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Comment: Comment: vcf file filtration w.r.t. missingness per snps and unmapped snps
6 months ago by analyst ▴ 60
0
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4
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659
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vcf file filtration w.r.t. missingness per snps and unmapped snps
missingness-per-snp unmaped-snps
6 months ago by analyst ▴ 60
0
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0
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1.3k
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Comment: Comment: If changing the RNA-Seq count normalisation method changes the DGE and downstrea
6 months ago by analyst ▴ 60
0
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1
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896
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Comment: Comment: blast against Gene Ontology (GO), KEGG, and EuKaryotic Orthologous Group (KOG) d
6 months ago by analyst ▴ 60
5
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3
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896
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blast against Gene Ontology (GO), KEGG, and EuKaryotic Orthologous Group (KOG) databases
KEGG KOG blast GO
updated 6 months ago by ★ 29k • written 6 months ago by ▴ 60
0
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0
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1.3k
views
Comment: Comment: If changing the RNA-Seq count normalisation method changes the DGE and downstrea
6 months ago by analyst ▴ 60
6
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6
replies
1.3k
views
If changing the RNA-Seq count normalisation method changes the DGE and downstream analysis results?
tpm normalisation fpm
6 months ago by analyst ▴ 60
0
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0
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1.3k
views
Comment: Comment: If changing the RNA-Seq count normalisation method changes the DGE and downstrea
6 months ago by analyst ▴ 60
3
votes
1
reply
462
views
TPM normalization of counts
TPM featurecounts
6 months ago by analyst ▴ 60
0
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0
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498
views
Comment: Comment: Finding gtf file for safflower
7 months ago by analyst ▴ 60
3
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2
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498
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Finding gtf file for safflower
gtf safflower
7 months ago by analyst ▴ 60
0
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1
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932
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Comment: Comment: Finding novel transcripts
7 months ago by analyst ▴ 60
0
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0
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932
views
Comment: Comment: Finding novel transcripts
7 months ago by analyst ▴ 60
183 results • Page 1 of 4
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