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Variant calling from comparison of assembled genomes where there is only one read depth.
variant
updated 19 months ago by ▴ 430 • written 20 months ago by ▴ 130
0
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0
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890
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Answer: Answer: Variant calling from comparison of assembled genomes where there is only one r
19 months ago by Hans ▴ 130
5
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3
replies
2.0k
views
How to force bcftools to call all variants
calling bcftools mpileup variant call
updated 20 months ago by 96k • written 20 months ago by ▴ 130
2
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1
reply
2.0k
views
Comment: Comment: How to force bcftools to call all variants
20 months ago by Hans ▴ 130
0
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0
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754
views
Comment: C: Dinucleodite variants are marked at single nucleotide variant in BCFTOOLS CALL
2.4 years ago by Hans ▴ 130
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1
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754
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Comment: C: Dinucleodite variants are marked at single nucleotide variant in BCFTOOLS CALL
updated 2.4 years ago by 83k • written 2.4 years ago by ▴ 130
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4
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754
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Dinucleodite variants are marked at single nucleotide variant in BCFTOOLS CALL
BCFtools Variant calling
2.4 years ago by Hans ▴ 130
0
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0
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2.1k
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Comment: C: VCF file with refrence genome in Discosnp is epmty
updated 2.9 years ago by 37k • written 6.7 years ago by ▴ 130
0
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1
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1.9k
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Comment: C: DiscoSNP parameters for complex genomes with reads starting only at specific res
updated 3.0 years ago by 37k • written 7.0 years ago by ▴ 130
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0
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1.9k
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Comment: A: DiscoSNP parameters for complex genomes with reads starting only at specific res
updated 3.0 years ago by 37k • written 7.0 years ago by ▴ 130
1
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0
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3.0k
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Comment: C: DiscoSnp Segmentation fault
updated 3.0 years ago by 37k • written 7.0 years ago by ▴ 130
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0
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3.0k
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Comment: A: DiscoSnp Segmentation fault
updated 3.0 years ago by 37k • written 7.0 years ago by ▴ 130
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0
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3.0k
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Comment: A: DiscoSnp Segmentation fault
updated 3.0 years ago by 37k • written 7.0 years ago by ▴ 130
0
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1
reply
3.0k
views
Comment: A: DiscoSnp Segmentation fault
updated 3.0 years ago by 37k • written 7.1 years ago by ▴ 130
0
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1
reply
3.0k
views
Comment: A: DiscoSnp Segmentation fault
updated 3.0 years ago by 37k • written 7.2 years ago by ▴ 130
0
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1
reply
3.0k
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Comment: C: DiscoSnp Segmentation fault
updated 3.0 years ago by 37k • written 7.2 years ago by ▴ 130
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0
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4.2k
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Comment: Comment: filtering and statistics of depth per genotype per SNP of VCF files (solved)
updated 8 months ago by 37k • written 7.9 years ago by ▴ 130
0
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0
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3.9k
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Comment: C: IGV does not show BAM file information
5.1 years ago by Hans ▴ 130
0
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1
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3.9k
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Comment: C: IGV does not show BAM file information
5.1 years ago by Hans ▴ 130
1
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13
replies
3.9k
views
IGV does not show BAM file information
RNA-Seq next-gen igv bam
updated 5.1 years ago by ★ 2.8k • written 5.1 years ago by ▴ 130
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1
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3.9k
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Comment: C: IGV does not show BAM file information
updated 5.1 years ago by 151k • written 5.1 years ago by ▴ 130
0
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1
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3.9k
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Comment: C: IGV does not show BAM file information
5.1 years ago by Hans ▴ 130
0
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1
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3.9k
views
Comment: C: IGV does not show BAM file information
updated 5.1 years ago by 123k • written 5.1 years ago by ▴ 130
0
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1
reply
3.9k
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Comment: C: IGV does not show BAM file information
5.1 years ago by Hans ▴ 130
0
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0
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1.8k
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Comment: C: Structural variation detection from RNA-seq
5.2 years ago by Hans ▴ 130
1
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8
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1.8k
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Structural variation detection from RNA-seq
RNA-Seq Indel
updated 5.2 years ago by 4.2k • written 5.2 years ago by ▴ 130
0
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1
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1.8k
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Comment: C: Structural variation detection from RNA-seq
5.2 years ago by Hans ▴ 130
0
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2
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1.8k
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Comment: C: Structural variation detection from RNA-seq
5.2 years ago by Hans ▴ 130
0
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1
reply
2.1k
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Comment: C: "Paired-end accessions do not match" error in gsnapl
6.3 years ago by Hans ▴ 130
0
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0
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2.1k
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Comment: C: "Paired-end accessions do not match" error in gsnapl
6.3 years ago by Hans ▴ 130
0
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1
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2.1k
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Comment: C: "Paired-end accessions do not match" error in gsnapl
6.4 years ago by Hans ▴ 130
0
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5
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2.1k
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"Paired-end accessions do not match" error in gsnapl
gsnapl
6.4 years ago by Hans ▴ 130
0
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0
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1.9k
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Comment: C: gmap error: Length XXXX of quality score differs from length XXX of nucleotides
6.4 years ago by Hans ▴ 130
0
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1
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1.9k
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Comment: C: gmap error: Length XXXX of quality score differs from length XXX of nucleotides
6.4 years ago by Hans ▴ 130
0
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4
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1.9k
views
gmap error: Length XXXX of quality score differs from length XXX of nucleotides in sequence
gmap
updated 6.4 years ago by 9.4k • written 6.4 years ago by ▴ 130
0
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0
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2.1k
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Comment: C: VCF file with refrence genome in Discosnp is epmty
6.7 years ago by Hans ▴ 130
1
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8
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2.1k
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VCF file with reference genome in Discosnp is empty
discosnp
updated 4 months ago by 37k • written 6.9 years ago by ▴ 130
0
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0
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2.1k
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Comment: C: VCF file with refrence genome in Discosnp is epmty
6.9 years ago by Hans ▴ 130
0
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1
reply
2.1k
views
Comment: C: VCF file with refrence genome in Discosnp is epmty
6.9 years ago by Hans ▴ 130
0
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5
replies
1.9k
views
DiscoSNP parameters for complex genomes with reads starting only at specific restriction sites
discosnp
updated 3 months ago by 37k • written 7.0 years ago by ▴ 130
5
votes
20
replies
3.0k
views
DiscoSnp Segmentation fault
snp discosnp
updated 9 weeks ago by 37k • written 7.3 years ago by ▴ 130
2
votes
0
replies
3.0k
views
Comment: Comment: DiscoSnp Segmentation fault
updated 9 weeks ago by 37k • written 7.3 years ago by ▴ 130
0
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1
reply
3.0k
views
Comment: Comment: DiscoSnp Segmentation fault
updated 9 weeks ago by 37k • written 7.3 years ago by ▴ 130
0
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0
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3.0k
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Comment: Comment: DiscoSnp Segmentation fault
updated 9 weeks ago by 37k • written 7.3 years ago by ▴ 130
1
vote
1
reply
1.7k
views
Lositan does not run simulations and does not read the right number of loci
lositan
updated 6 months ago by 37k • written 7.7 years ago by ▴ 130
4
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0
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7.1k
views
Answer: A: RepeatMasker library out of date.
7.9 years ago by Hans ▴ 130
0
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4
replies
4.2k
views
filtering and statistics of depth per genotype per SNP of VCF files (solved)
SNP next-gen
updated 8 months ago by 37k • written 7.9 years ago by ▴ 130
0
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0
replies
4.2k
views
Comment: Comment: filtering and statistics of depth per genotype per SNP of VCF files (solved)
updated 8 months ago by 37k • written 7.9 years ago by ▴ 130
0
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0
replies
3.6k
views
Comment: Comment: converting sam to bam format samtools
updated 8 months ago by 37k • written 7.9 years ago by ▴ 130
3
votes
5
replies
3.6k
views
converting sam to bam format samtools
samtools sam bam
updated 8 months ago by 37k • written 7.9 years ago by ▴ 130
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