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6
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5
replies
6.2k
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How to force bcftools to call all variants
calling bcftools mpileup variant call
updated 2.6 years ago by 154k • written 4.6 years ago by ▴ 150
1
vote
4
replies
2.3k
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Variant calling from comparison of assembled genomes where there is only one read depth.
variant
updated 4.6 years ago by ▴ 630 • written 4.6 years ago by ▴ 150
0
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0
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2.3k
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Answer: Answer: Variant calling from comparison of assembled genomes where there is only one r
4.6 years ago by Hans ▴ 150
2
votes
1
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6.2k
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Comment: Comment: How to force bcftools to call all variants
4.6 years ago by Hans ▴ 150
0
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0
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1.7k
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Comment: C: Dinucleodite variants are marked at single nucleotide variant in BCFTOOLS CALL
5.3 years ago by Hans ▴ 150
0
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1
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1.7k
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Comment: C: Dinucleodite variants are marked at single nucleotide variant in BCFTOOLS CALL
updated 5.3 years ago by 89k • written 5.3 years ago by ▴ 150
0
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4
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1.7k
views
Dinucleodite variants are marked at single nucleotide variant in BCFTOOLS CALL
BCFtools Variant calling
5.3 years ago by Hans ▴ 150
0
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0
replies
3.7k
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Comment: C: VCF file with refrence genome in Discosnp is epmty
updated 5.8 years ago by 45k • written 9.7 years ago by ▴ 150
0
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1
reply
3.2k
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Comment: C: DiscoSNP parameters for complex genomes with reads starting only at specific res
updated 5.9 years ago by 45k • written 9.9 years ago by ▴ 150
0
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0
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3.2k
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Comment: A: DiscoSNP parameters for complex genomes with reads starting only at specific res
updated 5.9 years ago by 45k • written 9.9 years ago by ▴ 150
1
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0
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6.3k
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Comment: C: DiscoSnp Segmentation fault
updated 6.0 years ago by 45k • written 10.0 years ago by ▴ 150
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0
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6.3k
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Comment: A: DiscoSnp Segmentation fault
updated 6.0 years ago by 45k • written 10.0 years ago by ▴ 150
0
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0
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6.3k
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Comment: A: DiscoSnp Segmentation fault
updated 6.0 years ago by 45k • written 10.0 years ago by ▴ 150
0
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1
reply
6.3k
views
Comment: A: DiscoSnp Segmentation fault
updated 6.0 years ago by 45k • written 10.1 years ago by ▴ 150
0
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1
reply
6.3k
views
Comment: A: DiscoSnp Segmentation fault
updated 6.0 years ago by 45k • written 10.1 years ago by ▴ 150
0
votes
1
reply
6.3k
views
Comment: C: DiscoSnp Segmentation fault
updated 6.0 years ago by 45k • written 10.1 years ago by ▴ 150
0
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0
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5.5k
views
Comment: Comment: filtering and statistics of depth per genotype per SNP of VCF files (solved)
updated 3.6 years ago by 45k • written 10.8 years ago by ▴ 150
0
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0
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7.6k
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Comment: C: IGV does not show BAM file information
8.0 years ago by Hans ▴ 150
0
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1
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7.6k
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Comment: C: IGV does not show BAM file information
8.0 years ago by Hans ▴ 150
1
vote
13
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7.6k
views
IGV does not show BAM file information
RNA-Seq next-gen igv bam
updated 8.0 years ago by ★ 3.0k • written 8.0 years ago by ▴ 150
0
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1
reply
7.6k
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Comment: C: IGV does not show BAM file information
updated 8.0 years ago by 166k • written 8.0 years ago by ▴ 150
0
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1
reply
7.6k
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Comment: C: IGV does not show BAM file information
8.0 years ago by Hans ▴ 150
0
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1
reply
7.6k
views
Comment: C: IGV does not show BAM file information
updated 8.0 years ago by 154k • written 8.0 years ago by ▴ 150
0
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1
reply
7.6k
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Comment: C: IGV does not show BAM file information
8.0 years ago by Hans ▴ 150
0
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0
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3.0k
views
Comment: C: Structural variation detection from RNA-seq
8.1 years ago by Hans ▴ 150
1
vote
8
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3.0k
views
Structural variation detection from RNA-seq
RNA-Seq Indel
updated 8.1 years ago by 8.1k • written 8.1 years ago by ▴ 150
0
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1
reply
3.0k
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Comment: C: Structural variation detection from RNA-seq
8.1 years ago by Hans ▴ 150
0
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2
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3.0k
views
Comment: C: Structural variation detection from RNA-seq
8.1 years ago by Hans ▴ 150
0
votes
1
reply
3.1k
views
Comment: C: "Paired-end accessions do not match" error in gsnapl
9.3 years ago by Hans ▴ 150
0
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0
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3.1k
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Comment: C: "Paired-end accessions do not match" error in gsnapl
9.3 years ago by Hans ▴ 150
0
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1
reply
3.1k
views
Comment: C: "Paired-end accessions do not match" error in gsnapl
9.3 years ago by Hans ▴ 150
0
votes
5
replies
3.1k
views
"Paired-end accessions do not match" error in gsnapl
gsnapl
9.3 years ago by Hans ▴ 150
1
vote
0
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2.8k
views
Comment: C: gmap error: Length XXXX of quality score differs from length XXX of nucleotides
9.3 years ago by Hans ▴ 150
0
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1
reply
2.8k
views
Comment: C: gmap error: Length XXXX of quality score differs from length XXX of nucleotides
9.3 years ago by Hans ▴ 150
1
vote
4
replies
2.8k
views
gmap error: Length XXXX of quality score differs from length XXX of nucleotides in sequence
gmap
updated 9.3 years ago by 9.8k • written 9.3 years ago by ▴ 150
0
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0
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3.7k
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Comment: C: VCF file with refrence genome in Discosnp is epmty
9.7 years ago by Hans ▴ 150
1
vote
8
replies
3.7k
views
VCF file with reference genome in Discosnp is empty
discosnp
updated 3.3 years ago by 45k • written 9.9 years ago by ▴ 150
0
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0
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3.7k
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Comment: C: VCF file with refrence genome in Discosnp is epmty
9.8 years ago by Hans ▴ 150
0
votes
1
reply
3.7k
views
Comment: C: VCF file with refrence genome in Discosnp is epmty
9.9 years ago by Hans ▴ 150
0
votes
5
replies
3.2k
views
DiscoSNP parameters for complex genomes with reads starting only at specific restriction sites
discosnp
updated 3.3 years ago by 45k • written 10.0 years ago by ▴ 150
5
votes
20
replies
6.3k
views
DiscoSnp Segmentation fault
snp discosnp
updated 3.1 years ago by 45k • written 10.2 years ago by ▴ 150
2
votes
0
replies
6.3k
views
Comment: Comment: DiscoSnp Segmentation fault
updated 3.1 years ago by 45k • written 10.2 years ago by ▴ 150
0
votes
1
reply
6.3k
views
Comment: Comment: DiscoSnp Segmentation fault
updated 3.1 years ago by 45k • written 10.2 years ago by ▴ 150
0
votes
0
replies
6.3k
views
Comment: Comment: DiscoSnp Segmentation fault
updated 3.1 years ago by 45k • written 10.2 years ago by ▴ 150
1
vote
1
reply
2.2k
views
Lositan does not run simulations and does not read the right number of loci
lositan
updated 3.5 years ago by 45k • written 10.6 years ago by ▴ 150
4
votes
0
replies
9.5k
views
Answer: A: RepeatMasker library out of date.
10.8 years ago by Hans ▴ 150
0
votes
4
replies
5.5k
views
filtering and statistics of depth per genotype per SNP of VCF files (solved)
SNP next-gen
updated 3.6 years ago by 45k • written 10.8 years ago by ▴ 150
0
votes
0
replies
5.5k
views
Comment: Comment: filtering and statistics of depth per genotype per SNP of VCF files (solved)
updated 3.6 years ago by 45k • written 10.8 years ago by ▴ 150
0
votes
0
replies
4.9k
views
Comment: Comment: converting sam to bam format samtools
updated 3.7 years ago by 45k • written 10.9 years ago by ▴ 150
3
votes
5
replies
4.9k
views
converting sam to bam format samtools
samtools sam bam
updated 3.7 years ago by 45k • written 10.9 years ago by ▴ 150
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