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Variant calling from comparison of assembled genomes where there is only one read depth.
variant
updated 14 months ago by ▴ 340 • written 14 months ago by ▴ 130
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782
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Answer: Answer: Variant calling from comparison of assembled genomes where there is only one r
14 months ago by Hans ▴ 130
5
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3
replies
1.7k
views
How to force bcftools to call all variants
calling bcftools mpileup variant call
updated 15 months ago by 93k • written 15 months ago by ▴ 130
2
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1
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1.7k
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Comment: Comment: How to force bcftools to call all variants
15 months ago by Hans ▴ 130
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0
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652
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Comment: C: Dinucleodite variants are marked at single nucleotide variant in BCFTOOLS CALL
23 months ago by Hans ▴ 130
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1
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652
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Comment: C: Dinucleodite variants are marked at single nucleotide variant in BCFTOOLS CALL
updated 23 months ago by 81k • written 23 months ago by ▴ 130
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4
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652
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Dinucleodite variants are marked at single nucleotide variant in BCFTOOLS CALL
BCFtools Variant calling
23 months ago by Hans ▴ 130
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0
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2.0k
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Comment: C: VCF file with refrence genome in Discosnp is epmty
updated 2.5 years ago by 36k • written 6.3 years ago by ▴ 130
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1
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1.8k
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Comment: C: DiscoSNP parameters for complex genomes with reads starting only at specific res
updated 2.6 years ago by 36k • written 6.6 years ago by ▴ 130
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0
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1.8k
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Comment: A: DiscoSNP parameters for complex genomes with reads starting only at specific res
updated 2.6 years ago by 36k • written 6.6 years ago by ▴ 130
1
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0
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2.8k
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Comment: C: DiscoSnp Segmentation fault
updated 2.6 years ago by 36k • written 6.6 years ago by ▴ 130
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0
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2.8k
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Comment: A: DiscoSnp Segmentation fault
updated 2.6 years ago by 36k • written 6.6 years ago by ▴ 130
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0
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2.8k
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Comment: A: DiscoSnp Segmentation fault
updated 2.6 years ago by 36k • written 6.6 years ago by ▴ 130
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1
reply
2.8k
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Comment: A: DiscoSnp Segmentation fault
updated 2.6 years ago by 36k • written 6.7 years ago by ▴ 130
0
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1
reply
2.8k
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Comment: A: DiscoSnp Segmentation fault
updated 2.6 years ago by 36k • written 6.7 years ago by ▴ 130
0
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1
reply
2.8k
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Comment: C: DiscoSnp Segmentation fault
updated 2.6 years ago by 36k • written 6.8 years ago by ▴ 130
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0
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4.0k
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Comment: Comment: filtering and statistics of depth per genotype per SNP of VCF files (solved)
updated 3 months ago by 36k • written 7.5 years ago by ▴ 130
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0
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3.6k
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Comment: C: IGV does not show BAM file information
4.6 years ago by Hans ▴ 130
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1
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3.6k
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Comment: C: IGV does not show BAM file information
4.7 years ago by Hans ▴ 130
1
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13
replies
3.6k
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IGV does not show BAM file information
RNA-Seq next-gen igv bam
updated 4.7 years ago by ★ 2.6k • written 4.7 years ago by ▴ 130
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1
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3.6k
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Comment: C: IGV does not show BAM file information
updated 4.7 years ago by 146k • written 4.7 years ago by ▴ 130
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1
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3.6k
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Comment: C: IGV does not show BAM file information
4.7 years ago by Hans ▴ 130
0
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1
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3.6k
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Comment: C: IGV does not show BAM file information
updated 4.7 years ago by 117k • written 4.7 years ago by ▴ 130
0
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1
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3.6k
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Comment: C: IGV does not show BAM file information
4.7 years ago by Hans ▴ 130
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0
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1.7k
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Comment: C: Structural variation detection from RNA-seq
4.7 years ago by Hans ▴ 130
1
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8
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1.7k
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Structural variation detection from RNA-seq
RNA-Seq Indel
updated 4.7 years ago by ★ 3.9k • written 4.8 years ago by ▴ 130
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1
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1.7k
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Comment: C: Structural variation detection from RNA-seq
4.8 years ago by Hans ▴ 130
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2
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1.7k
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Comment: C: Structural variation detection from RNA-seq
4.8 years ago by Hans ▴ 130
0
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1
reply
2.0k
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Comment: C: "Paired-end accessions do not match" error in gsnapl
5.9 years ago by Hans ▴ 130
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0
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2.0k
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Comment: C: "Paired-end accessions do not match" error in gsnapl
5.9 years ago by Hans ▴ 130
0
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1
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2.0k
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Comment: C: "Paired-end accessions do not match" error in gsnapl
5.9 years ago by Hans ▴ 130
0
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5
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2.0k
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"Paired-end accessions do not match" error in gsnapl
gsnapl
5.9 years ago by Hans ▴ 130
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0
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1.8k
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Comment: C: gmap error: Length XXXX of quality score differs from length XXX of nucleotides
6.0 years ago by Hans ▴ 130
0
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1
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1.8k
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Comment: C: gmap error: Length XXXX of quality score differs from length XXX of nucleotides
6.0 years ago by Hans ▴ 130
0
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4
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1.8k
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gmap error: Length XXXX of quality score differs from length XXX of nucleotides in sequence
gmap
updated 6.0 years ago by 9.3k • written 6.0 years ago by ▴ 130
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0
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2.0k
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Comment: C: VCF file with refrence genome in Discosnp is epmty
6.3 years ago by Hans ▴ 130
1
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8
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2.0k
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VCF file with refrence genome in Discosnp is epmty
discosnp
updated 6.3 years ago by ▴ 40 • written 6.5 years ago by ▴ 130
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0
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2.0k
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Comment: C: VCF file with refrence genome in Discosnp is epmty
6.5 years ago by Hans ▴ 130
0
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1
reply
2.0k
views
Comment: C: VCF file with refrence genome in Discosnp is epmty
6.5 years ago by Hans ▴ 130
0
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5
replies
1.8k
views
DiscoSNP parameters for complex genomes with reads starting only at specific restriction sites
discosnp
updated 6.6 years ago by ▴ 860 • written 6.6 years ago by ▴ 130
5
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20
replies
2.8k
views
DiscoSnp Segmentation fault
snp discosnp
updated 6.6 years ago by ▴ 860 • written 6.9 years ago by ▴ 130
2
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0
replies
2.8k
views
Comment: A: DiscoSnp Segmentation fault
6.8 years ago by Hans ▴ 130
0
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1
reply
2.8k
views
Comment: C: DiscoSnp Segmentation fault
6.9 years ago by Hans ▴ 130
0
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0
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2.8k
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Comment: C: DiscoSnp Segmentation fault
6.9 years ago by Hans ▴ 130
1
vote
1
reply
1.6k
views
Lositan does not run simulations and does not read the right number of loci
lositan
updated 5 weeks ago by 36k • written 7.3 years ago by ▴ 130
4
votes
0
replies
6.9k
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Answer: A: RepeatMasker library out of date.
7.4 years ago by Hans ▴ 130
0
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4
replies
4.0k
views
filtering and statistics of depth per genotype per SNP of VCF files (solved)
SNP next-gen
updated 3 months ago by 36k • written 7.5 years ago by ▴ 130
0
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0
replies
4.0k
views
Comment: Comment: filtering and statistics of depth per genotype per SNP of VCF files (solved)
updated 3 months ago by 36k • written 7.5 years ago by ▴ 130
3
votes
5
replies
3.4k
views
converting sam to bam format samtools
samtools sam bam
updated 3 months ago by 36k • written 7.5 years ago by ▴ 130
0
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0
replies
3.4k
views
Comment: Comment: converting sam to bam format samtools
updated 3 months ago by 36k • written 7.5 years ago by ▴ 130
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