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Variant calling from comparison of assembled genomes where there is only one read depth.
variant
updated 16 months ago by ▴ 340 • written 16 months ago by ▴ 130
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815
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Answer: Answer: Variant calling from comparison of assembled genomes where there is only one r
16 months ago by Hans ▴ 130
5
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3
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1.8k
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How to force bcftools to call all variants
calling bcftools mpileup variant call
updated 16 months ago by 94k • written 16 months ago by ▴ 130
2
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1
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1.8k
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Comment: Comment: How to force bcftools to call all variants
16 months ago by Hans ▴ 130
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677
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Comment: C: Dinucleodite variants are marked at single nucleotide variant in BCFTOOLS CALL
2.0 years ago by Hans ▴ 130
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1
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677
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Comment: C: Dinucleodite variants are marked at single nucleotide variant in BCFTOOLS CALL
updated 2.0 years ago by 82k • written 2.0 years ago by ▴ 130
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4
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677
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Dinucleodite variants are marked at single nucleotide variant in BCFTOOLS CALL
BCFtools Variant calling
2.0 years ago by Hans ▴ 130
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0
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2.0k
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Comment: C: VCF file with refrence genome in Discosnp is epmty
updated 2.6 years ago by 36k • written 6.4 years ago by ▴ 130
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1
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1.9k
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Comment: C: DiscoSNP parameters for complex genomes with reads starting only at specific res
updated 2.7 years ago by 36k • written 6.7 years ago by ▴ 130
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0
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1.9k
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Comment: A: DiscoSNP parameters for complex genomes with reads starting only at specific res
updated 2.7 years ago by 36k • written 6.7 years ago by ▴ 130
1
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0
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2.8k
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Comment: C: DiscoSnp Segmentation fault
updated 2.7 years ago by 36k • written 6.7 years ago by ▴ 130
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0
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2.8k
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Comment: A: DiscoSnp Segmentation fault
updated 2.7 years ago by 36k • written 6.7 years ago by ▴ 130
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0
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2.8k
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Comment: A: DiscoSnp Segmentation fault
updated 2.7 years ago by 36k • written 6.7 years ago by ▴ 130
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1
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2.8k
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Comment: A: DiscoSnp Segmentation fault
updated 2.7 years ago by 36k • written 6.8 years ago by ▴ 130
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1
reply
2.8k
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Comment: A: DiscoSnp Segmentation fault
updated 2.7 years ago by 36k • written 6.9 years ago by ▴ 130
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1
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2.8k
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Comment: C: DiscoSnp Segmentation fault
updated 2.7 years ago by 36k • written 6.9 years ago by ▴ 130
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0
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4.1k
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Comment: Comment: filtering and statistics of depth per genotype per SNP of VCF files (solved)
updated 4 months ago by 36k • written 7.6 years ago by ▴ 130
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3.7k
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Comment: C: IGV does not show BAM file information
4.8 years ago by Hans ▴ 130
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1
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3.7k
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Comment: C: IGV does not show BAM file information
4.8 years ago by Hans ▴ 130
1
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13
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3.7k
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IGV does not show BAM file information
RNA-Seq next-gen igv bam
updated 4.8 years ago by ★ 2.6k • written 4.8 years ago by ▴ 130
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1
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3.7k
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Comment: C: IGV does not show BAM file information
updated 4.8 years ago by 147k • written 4.8 years ago by ▴ 130
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1
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3.7k
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Comment: C: IGV does not show BAM file information
4.8 years ago by Hans ▴ 130
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1
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3.7k
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Comment: C: IGV does not show BAM file information
updated 4.8 years ago by 119k • written 4.8 years ago by ▴ 130
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1
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3.7k
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Comment: C: IGV does not show BAM file information
4.8 years ago by Hans ▴ 130
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1.8k
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Comment: C: Structural variation detection from RNA-seq
4.9 years ago by Hans ▴ 130
1
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8
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1.8k
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Structural variation detection from RNA-seq
RNA-Seq Indel
updated 4.9 years ago by ★ 4.0k • written 4.9 years ago by ▴ 130
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1
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1.8k
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Comment: C: Structural variation detection from RNA-seq
4.9 years ago by Hans ▴ 130
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2
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1.8k
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Comment: C: Structural variation detection from RNA-seq
4.9 years ago by Hans ▴ 130
0
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1
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2.0k
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Comment: C: "Paired-end accessions do not match" error in gsnapl
6.0 years ago by Hans ▴ 130
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0
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2.0k
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Comment: C: "Paired-end accessions do not match" error in gsnapl
6.0 years ago by Hans ▴ 130
0
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1
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2.0k
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Comment: C: "Paired-end accessions do not match" error in gsnapl
6.1 years ago by Hans ▴ 130
0
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5
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2.0k
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"Paired-end accessions do not match" error in gsnapl
gsnapl
6.1 years ago by Hans ▴ 130
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0
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1.8k
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Comment: C: gmap error: Length XXXX of quality score differs from length XXX of nucleotides
6.1 years ago by Hans ▴ 130
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1
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1.8k
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Comment: C: gmap error: Length XXXX of quality score differs from length XXX of nucleotides
6.1 years ago by Hans ▴ 130
0
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4
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1.8k
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gmap error: Length XXXX of quality score differs from length XXX of nucleotides in sequence
gmap
updated 6.1 years ago by 9.4k • written 6.1 years ago by ▴ 130
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2.0k
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Comment: C: VCF file with refrence genome in Discosnp is epmty
6.4 years ago by Hans ▴ 130
1
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8
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2.0k
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VCF file with reference genome in Discosnp is empty
discosnp
updated 15 days ago by 36k • written 6.6 years ago by ▴ 130
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0
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2.0k
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Comment: C: VCF file with refrence genome in Discosnp is epmty
6.6 years ago by Hans ▴ 130
0
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1
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2.0k
views
Comment: C: VCF file with refrence genome in Discosnp is epmty
6.6 years ago by Hans ▴ 130
0
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5
replies
1.9k
views
DiscoSNP parameters for complex genomes with reads starting only at specific restriction sites
discosnp
updated 4 days ago by 36k • written 6.7 years ago by ▴ 130
5
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20
replies
2.8k
views
DiscoSnp Segmentation fault
snp discosnp
updated 6.7 years ago by ▴ 860 • written 7.0 years ago by ▴ 130
2
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0
replies
2.8k
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Comment: A: DiscoSnp Segmentation fault
7.0 years ago by Hans ▴ 130
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1
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2.8k
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Comment: C: DiscoSnp Segmentation fault
7.0 years ago by Hans ▴ 130
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0
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2.8k
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Comment: C: DiscoSnp Segmentation fault
7.0 years ago by Hans ▴ 130
1
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1
reply
1.6k
views
Lositan does not run simulations and does not read the right number of loci
lositan
updated 11 weeks ago by 36k • written 7.4 years ago by ▴ 130
4
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0
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6.9k
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Answer: A: RepeatMasker library out of date.
7.6 years ago by Hans ▴ 130
0
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4
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4.1k
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filtering and statistics of depth per genotype per SNP of VCF files (solved)
SNP next-gen
updated 4 months ago by 36k • written 7.6 years ago by ▴ 130
0
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0
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4.1k
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Comment: Comment: filtering and statistics of depth per genotype per SNP of VCF files (solved)
updated 4 months ago by 36k • written 7.6 years ago by ▴ 130
3
votes
5
replies
3.5k
views
converting sam to bam format samtools
samtools sam bam
updated 5 months ago by 36k • written 7.6 years ago by ▴ 130
0
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0
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3.5k
views
Comment: Comment: converting sam to bam format samtools
updated 5 months ago by 36k • written 7.6 years ago by ▴ 130
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