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6
votes
5
replies
4.2k
views
How to force bcftools to call all variants
calling
bcftools
mpileup
variant
call
updated 17 months ago by
GenoMax
145k • written 3.4 years ago by
Hans
▴ 140
1
vote
4
replies
1.6k
views
Variant calling from comparison of assembled genomes where there is only one read depth.
variant
updated 3.4 years ago by
samuel.a.odonnell
▴ 560 • written 3.4 years ago by
Hans
▴ 140
0
votes
0
replies
1.6k
views
Answer:
Answer: Variant calling from comparison of assembled genomes where there is only one r
3.4 years ago by
Hans
▴ 140
2
votes
1
reply
4.2k
views
Comment:
Comment: How to force bcftools to call all variants
3.4 years ago by
Hans
▴ 140
0
votes
0
replies
1.3k
views
Comment:
C: Dinucleodite variants are marked at single nucleotide variant in BCFTOOLS CALL
4.1 years ago by
Hans
▴ 140
0
votes
1
reply
1.3k
views
Comment:
C: Dinucleodite variants are marked at single nucleotide variant in BCFTOOLS CALL
updated 4.1 years ago by
Kevin Blighe
88k • written 4.1 years ago by
Hans
▴ 140
0
votes
4
replies
1.3k
views
Dinucleodite variants are marked at single nucleotide variant in BCFTOOLS CALL
BCFtools
Variant calling
4.1 years ago by
Hans
▴ 140
0
votes
0
replies
2.9k
views
Comment:
C: VCF file with refrence genome in Discosnp is epmty
updated 4.6 years ago by
Ram
44k • written 8.5 years ago by
Hans
▴ 140
0
votes
1
reply
2.5k
views
Comment:
C: DiscoSNP parameters for complex genomes with reads starting only at specific res
updated 4.7 years ago by
Ram
44k • written 8.8 years ago by
Hans
▴ 140
0
votes
0
replies
2.5k
views
Comment:
A: DiscoSNP parameters for complex genomes with reads starting only at specific res
updated 4.7 years ago by
Ram
44k • written 8.8 years ago by
Hans
▴ 140
1
vote
0
replies
4.5k
views
Comment:
C: DiscoSnp Segmentation fault
updated 4.8 years ago by
Ram
44k • written 8.8 years ago by
Hans
▴ 140
0
votes
0
replies
4.5k
views
Comment:
A: DiscoSnp Segmentation fault
updated 4.8 years ago by
Ram
44k • written 8.8 years ago by
Hans
▴ 140
0
votes
0
replies
4.5k
views
Comment:
A: DiscoSnp Segmentation fault
updated 4.8 years ago by
Ram
44k • written 8.8 years ago by
Hans
▴ 140
0
votes
1
reply
4.5k
views
Comment:
A: DiscoSnp Segmentation fault
updated 4.8 years ago by
Ram
44k • written 8.9 years ago by
Hans
▴ 140
0
votes
1
reply
4.5k
views
Comment:
A: DiscoSnp Segmentation fault
updated 4.8 years ago by
Ram
44k • written 8.9 years ago by
Hans
▴ 140
0
votes
1
reply
4.5k
views
Comment:
C: DiscoSnp Segmentation fault
updated 4.8 years ago by
Ram
44k • written 8.9 years ago by
Hans
▴ 140
0
votes
0
replies
4.9k
views
Comment:
Comment: filtering and statistics of depth per genotype per SNP of VCF files (solved)
updated 2.4 years ago by
Ram
44k • written 9.6 years ago by
Hans
▴ 140
0
votes
0
replies
6.1k
views
Comment:
C: IGV does not show BAM file information
6.8 years ago by
Hans
▴ 140
0
votes
1
reply
6.1k
views
Comment:
C: IGV does not show BAM file information
6.8 years ago by
Hans
▴ 140
1
vote
13
replies
6.1k
views
IGV does not show BAM file information
RNA-Seq
next-gen
igv
bam
updated 6.8 years ago by
d-cameron
★ 2.9k • written 6.8 years ago by
Hans
▴ 140
0
votes
1
reply
6.1k
views
Comment:
C: IGV does not show BAM file information
updated 6.8 years ago by
Pierre Lindenbaum
163k • written 6.8 years ago by
Hans
▴ 140
0
votes
1
reply
6.1k
views
Comment:
C: IGV does not show BAM file information
6.8 years ago by
Hans
▴ 140
0
votes
1
reply
6.1k
views
Comment:
C: IGV does not show BAM file information
updated 6.8 years ago by
GenoMax
145k • written 6.8 years ago by
Hans
▴ 140
0
votes
1
reply
6.1k
views
Comment:
C: IGV does not show BAM file information
6.8 years ago by
Hans
▴ 140
0
votes
0
replies
2.3k
views
Comment:
C: Structural variation detection from RNA-seq
6.9 years ago by
Hans
▴ 140
1
vote
8
replies
2.3k
views
Structural variation detection from RNA-seq
RNA-Seq
Indel
updated 6.9 years ago by
colindaven
6.7k • written 6.9 years ago by
Hans
▴ 140
0
votes
1
reply
2.3k
views
Comment:
C: Structural variation detection from RNA-seq
6.9 years ago by
Hans
▴ 140
0
votes
2
replies
2.3k
views
Comment:
C: Structural variation detection from RNA-seq
6.9 years ago by
Hans
▴ 140
0
votes
1
reply
2.7k
views
Comment:
C: "Paired-end accessions do not match" error in gsnapl
8.1 years ago by
Hans
▴ 140
0
votes
0
replies
2.7k
views
Comment:
C: "Paired-end accessions do not match" error in gsnapl
8.1 years ago by
Hans
▴ 140
0
votes
1
reply
2.7k
views
Comment:
C: "Paired-end accessions do not match" error in gsnapl
8.1 years ago by
Hans
▴ 140
0
votes
5
replies
2.7k
views
"Paired-end accessions do not match" error in gsnapl
gsnapl
8.1 years ago by
Hans
▴ 140
0
votes
0
replies
2.4k
views
Comment:
C: gmap error: Length XXXX of quality score differs from length XXX of nucleotides
8.1 years ago by
Hans
▴ 140
0
votes
1
reply
2.4k
views
Comment:
C: gmap error: Length XXXX of quality score differs from length XXX of nucleotides
8.1 years ago by
Hans
▴ 140
0
votes
4
replies
2.4k
views
gmap error: Length XXXX of quality score differs from length XXX of nucleotides in sequence
gmap
updated 8.1 years ago by
Medhat
9.8k • written 8.1 years ago by
Hans
▴ 140
0
votes
0
replies
2.9k
views
Comment:
C: VCF file with refrence genome in Discosnp is epmty
8.5 years ago by
Hans
▴ 140
1
vote
8
replies
2.9k
views
VCF file with reference genome in Discosnp is empty
discosnp
updated 2.1 years ago by
Ram
44k • written 8.7 years ago by
Hans
▴ 140
0
votes
0
replies
2.9k
views
Comment:
C: VCF file with refrence genome in Discosnp is epmty
8.7 years ago by
Hans
▴ 140
0
votes
1
reply
2.9k
views
Comment:
C: VCF file with refrence genome in Discosnp is epmty
8.7 years ago by
Hans
▴ 140
0
votes
5
replies
2.5k
views
DiscoSNP parameters for complex genomes with reads starting only at specific restriction sites
discosnp
updated 2.1 years ago by
Ram
44k • written 8.8 years ago by
Hans
▴ 140
5
votes
20
replies
4.5k
views
DiscoSnp Segmentation fault
snp
discosnp
updated 23 months ago by
Ram
44k • written 9.0 years ago by
Hans
▴ 140
2
votes
0
replies
4.5k
views
Comment:
Comment: DiscoSnp Segmentation fault
updated 23 months ago by
Ram
44k • written 9.0 years ago by
Hans
▴ 140
0
votes
1
reply
4.5k
views
Comment:
Comment: DiscoSnp Segmentation fault
updated 23 months ago by
Ram
44k • written 9.0 years ago by
Hans
▴ 140
0
votes
0
replies
4.5k
views
Comment:
Comment: DiscoSnp Segmentation fault
updated 23 months ago by
Ram
44k • written 9.0 years ago by
Hans
▴ 140
1
vote
1
reply
2.0k
views
Lositan does not run simulations and does not read the right number of loci
lositan
updated 2.3 years ago by
Ram
44k • written 9.4 years ago by
Hans
▴ 140
4
votes
0
replies
8.4k
views
Answer:
A: RepeatMasker library out of date.
9.6 years ago by
Hans
▴ 140
0
votes
4
replies
4.9k
views
filtering and statistics of depth per genotype per SNP of VCF files (solved)
SNP
next-gen
updated 2.4 years ago by
Ram
44k • written 9.6 years ago by
Hans
▴ 140
0
votes
0
replies
4.9k
views
Comment:
Comment: filtering and statistics of depth per genotype per SNP of VCF files (solved)
updated 2.4 years ago by
Ram
44k • written 9.6 years ago by
Hans
▴ 140
3
votes
5
replies
4.2k
views
converting sam to bam format samtools
samtools
sam
bam
updated 2.5 years ago by
Ram
44k • written 9.7 years ago by
Hans
▴ 140
0
votes
0
replies
4.2k
views
Comment:
Comment: converting sam to bam format samtools
updated 2.5 years ago by
Ram
44k • written 9.7 years ago by
Hans
▴ 140
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