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6
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5
replies
4.2k
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How to force bcftools to call all variants
calling bcftools mpileup variant call
updated 17 months ago by 145k • written 3.4 years ago by ▴ 140
1
vote
4
replies
1.6k
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Variant calling from comparison of assembled genomes where there is only one read depth.
variant
updated 3.4 years ago by ▴ 560 • written 3.4 years ago by ▴ 140
0
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0
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1.6k
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Answer: Answer: Variant calling from comparison of assembled genomes where there is only one r
3.4 years ago by Hans ▴ 140
2
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1
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4.2k
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Comment: Comment: How to force bcftools to call all variants
3.4 years ago by Hans ▴ 140
0
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0
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1.3k
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Comment: C: Dinucleodite variants are marked at single nucleotide variant in BCFTOOLS CALL
4.1 years ago by Hans ▴ 140
0
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1
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1.3k
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Comment: C: Dinucleodite variants are marked at single nucleotide variant in BCFTOOLS CALL
updated 4.1 years ago by 88k • written 4.1 years ago by ▴ 140
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4
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1.3k
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Dinucleodite variants are marked at single nucleotide variant in BCFTOOLS CALL
BCFtools Variant calling
4.1 years ago by Hans ▴ 140
0
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0
replies
2.9k
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Comment: C: VCF file with refrence genome in Discosnp is epmty
updated 4.6 years ago by 44k • written 8.5 years ago by ▴ 140
0
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1
reply
2.5k
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Comment: C: DiscoSNP parameters for complex genomes with reads starting only at specific res
updated 4.7 years ago by 44k • written 8.8 years ago by ▴ 140
0
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0
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2.5k
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Comment: A: DiscoSNP parameters for complex genomes with reads starting only at specific res
updated 4.7 years ago by 44k • written 8.8 years ago by ▴ 140
1
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0
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4.5k
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Comment: C: DiscoSnp Segmentation fault
updated 4.8 years ago by 44k • written 8.8 years ago by ▴ 140
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0
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4.5k
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Comment: A: DiscoSnp Segmentation fault
updated 4.8 years ago by 44k • written 8.8 years ago by ▴ 140
0
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0
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4.5k
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Comment: A: DiscoSnp Segmentation fault
updated 4.8 years ago by 44k • written 8.8 years ago by ▴ 140
0
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1
reply
4.5k
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Comment: A: DiscoSnp Segmentation fault
updated 4.8 years ago by 44k • written 8.9 years ago by ▴ 140
0
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1
reply
4.5k
views
Comment: A: DiscoSnp Segmentation fault
updated 4.8 years ago by 44k • written 8.9 years ago by ▴ 140
0
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1
reply
4.5k
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Comment: C: DiscoSnp Segmentation fault
updated 4.8 years ago by 44k • written 8.9 years ago by ▴ 140
0
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0
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4.9k
views
Comment: Comment: filtering and statistics of depth per genotype per SNP of VCF files (solved)
updated 2.4 years ago by 44k • written 9.6 years ago by ▴ 140
0
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0
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6.1k
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Comment: C: IGV does not show BAM file information
6.8 years ago by Hans ▴ 140
0
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1
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6.1k
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Comment: C: IGV does not show BAM file information
6.8 years ago by Hans ▴ 140
1
vote
13
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6.1k
views
IGV does not show BAM file information
RNA-Seq next-gen igv bam
updated 6.8 years ago by ★ 2.9k • written 6.8 years ago by ▴ 140
0
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1
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6.1k
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Comment: C: IGV does not show BAM file information
updated 6.8 years ago by 163k • written 6.8 years ago by ▴ 140
0
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1
reply
6.1k
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Comment: C: IGV does not show BAM file information
6.8 years ago by Hans ▴ 140
0
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1
reply
6.1k
views
Comment: C: IGV does not show BAM file information
updated 6.8 years ago by 145k • written 6.8 years ago by ▴ 140
0
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1
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6.1k
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Comment: C: IGV does not show BAM file information
6.8 years ago by Hans ▴ 140
0
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0
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2.3k
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Comment: C: Structural variation detection from RNA-seq
6.9 years ago by Hans ▴ 140
1
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8
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2.3k
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Structural variation detection from RNA-seq
RNA-Seq Indel
updated 6.9 years ago by 6.7k • written 6.9 years ago by ▴ 140
0
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1
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2.3k
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Comment: C: Structural variation detection from RNA-seq
6.9 years ago by Hans ▴ 140
0
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2
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2.3k
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Comment: C: Structural variation detection from RNA-seq
6.9 years ago by Hans ▴ 140
0
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1
reply
2.7k
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Comment: C: "Paired-end accessions do not match" error in gsnapl
8.1 years ago by Hans ▴ 140
0
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0
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2.7k
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Comment: C: "Paired-end accessions do not match" error in gsnapl
8.1 years ago by Hans ▴ 140
0
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1
reply
2.7k
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Comment: C: "Paired-end accessions do not match" error in gsnapl
8.1 years ago by Hans ▴ 140
0
votes
5
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2.7k
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"Paired-end accessions do not match" error in gsnapl
gsnapl
8.1 years ago by Hans ▴ 140
0
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0
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2.4k
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Comment: C: gmap error: Length XXXX of quality score differs from length XXX of nucleotides
8.1 years ago by Hans ▴ 140
0
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1
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2.4k
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Comment: C: gmap error: Length XXXX of quality score differs from length XXX of nucleotides
8.1 years ago by Hans ▴ 140
0
votes
4
replies
2.4k
views
gmap error: Length XXXX of quality score differs from length XXX of nucleotides in sequence
gmap
updated 8.1 years ago by 9.8k • written 8.1 years ago by ▴ 140
0
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0
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2.9k
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Comment: C: VCF file with refrence genome in Discosnp is epmty
8.5 years ago by Hans ▴ 140
1
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8
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2.9k
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VCF file with reference genome in Discosnp is empty
discosnp
updated 2.1 years ago by 44k • written 8.7 years ago by ▴ 140
0
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0
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2.9k
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Comment: C: VCF file with refrence genome in Discosnp is epmty
8.7 years ago by Hans ▴ 140
0
votes
1
reply
2.9k
views
Comment: C: VCF file with refrence genome in Discosnp is epmty
8.7 years ago by Hans ▴ 140
0
votes
5
replies
2.5k
views
DiscoSNP parameters for complex genomes with reads starting only at specific restriction sites
discosnp
updated 2.1 years ago by 44k • written 8.8 years ago by ▴ 140
5
votes
20
replies
4.5k
views
DiscoSnp Segmentation fault
snp discosnp
updated 23 months ago by 44k • written 9.0 years ago by ▴ 140
2
votes
0
replies
4.5k
views
Comment: Comment: DiscoSnp Segmentation fault
updated 23 months ago by 44k • written 9.0 years ago by ▴ 140
0
votes
1
reply
4.5k
views
Comment: Comment: DiscoSnp Segmentation fault
updated 23 months ago by 44k • written 9.0 years ago by ▴ 140
0
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0
replies
4.5k
views
Comment: Comment: DiscoSnp Segmentation fault
updated 23 months ago by 44k • written 9.0 years ago by ▴ 140
1
vote
1
reply
2.0k
views
Lositan does not run simulations and does not read the right number of loci
lositan
updated 2.3 years ago by 44k • written 9.4 years ago by ▴ 140
4
votes
0
replies
8.4k
views
Answer: A: RepeatMasker library out of date.
9.6 years ago by Hans ▴ 140
0
votes
4
replies
4.9k
views
filtering and statistics of depth per genotype per SNP of VCF files (solved)
SNP next-gen
updated 2.4 years ago by 44k • written 9.6 years ago by ▴ 140
0
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0
replies
4.9k
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Comment: Comment: filtering and statistics of depth per genotype per SNP of VCF files (solved)
updated 2.4 years ago by 44k • written 9.6 years ago by ▴ 140
3
votes
5
replies
4.2k
views
converting sam to bam format samtools
samtools sam bam
updated 2.5 years ago by 44k • written 9.7 years ago by ▴ 140
0
votes
0
replies
4.2k
views
Comment: Comment: converting sam to bam format samtools
updated 2.5 years ago by 44k • written 9.7 years ago by ▴ 140
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