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6
votes
11
replies
3.2k
views
Using Ensembl API to get a Gene ID from a protein ID
ensembl API
updated 5 months ago by 38k • written 7.7 years ago by ★ 3.0k
0
votes
1
reply
549
views
Comment: Comment: Retrieving the corresponding Haplotype CDS from Ensembl
21 months ago by Joseph Hughes ★ 3.0k
2
votes
3
replies
549
views
Retrieving the corresponding Haplotype CDS from Ensembl
gene Ensembl protein Haplotype
updated 21 months ago by 23k • written 21 months ago by ★ 3.0k
0
votes
0
replies
474
views
Comment: C: How to download sequence of a protein from all available species from NCBI?
2.2 years ago by Joseph Hughes ★ 3.0k
1
vote
0
replies
522
views
Comment: C: Do I need to search for the complementary sequence when using regex?
2.2 years ago by Joseph Hughes ★ 3.0k
0
votes
1
reply
3.4k
views
How to prepare a BED file to make a sashimi plot in IGV?
IGV sashimi BED
updated 8 months ago by 38k • written 7.2 years ago by ★ 3.0k
3
votes
0
replies
4.7k
views
Answer: A: Compare two trees in Newick format
updated 3.2 years ago by 38k • written 8.8 years ago by ★ 3.0k
0
votes
0
replies
2.4k
views
Comment: C: How to download an alignment from TreeBase according to accession numbers
updated 3.2 years ago by 38k • written 8.8 years ago by ★ 3.0k
0
votes
1
reply
2.4k
views
Answer: A: How to download an alignment from TreeBase according to accession numbers
updated 3.2 years ago by 38k • written 8.8 years ago by ★ 3.0k
2
votes
1
reply
5.2k
views
Answer: A: Phylogenetic tree for 16S rRNA with whole taxonomy included
updated 3.2 years ago by 38k • written 8.9 years ago by ★ 3.0k
0
votes
1
reply
1.8k
views
Comment: C: Is there a good reason for multi-locus phylogeny when there is PHT conflict?
updated 3.3 years ago by 38k • written 8.9 years ago by ★ 3.0k
1
vote
0
replies
5.7k
views
Comment: C: Analysis Of Short Tandem Repeats/Trinucleotides In Ngs Data -- Revisited
updated 3.3 years ago by 38k • written 8.9 years ago by ★ 3.0k
2
votes
1
reply
4.1k
views
Answer: A: Any tool to generate protein similarity matrix
updated 3.3 years ago by 38k • written 8.9 years ago by ★ 3.0k
0
votes
0
replies
47k
views
Comment: C: Reference Assembly - Mapping Reads To A Reference Genome
updated 3.3 years ago by 38k • written 8.9 years ago by ★ 3.0k
0
votes
0
replies
2.4k
views
Answer: A: Could you explain the percentage of A, C , G, T in hg19 ?
updated 3.3 years ago by 38k • written 7.2 years ago by ★ 3.0k
0
votes
0
replies
8.1k
views
Comment: C: R functions that extract the ORF from a sequence
updated 3.4 years ago by 38k • written 7.5 years ago by ★ 3.0k
0
votes
0
replies
3.2k
views
Comment: C: Using Ensembl API to get a Gene ID from a protein ID
updated 3.4 years ago by 38k • written 7.7 years ago by ★ 3.0k
0
votes
1
reply
3.2k
views
Comment: C: Using Ensembl API to get a Gene ID from a protein ID
updated 3.4 years ago by 38k • written 7.7 years ago by ★ 3.0k
0
votes
1
reply
3.2k
views
Comment: C: Using Ensembl API to get a Gene ID from a protein ID
updated 3.4 years ago by 38k • written 7.7 years ago by ★ 3.0k
0
votes
1
reply
3.2k
views
Answer: A: Viral genome annotation
3.4 years ago by Joseph Hughes ★ 3.0k
2
votes
1
reply
1.2k
views
Answer: A: calculating confidence intervals of boostrapped trees
3.4 years ago by Joseph Hughes ★ 3.0k
1
vote
1
reply
2.5k
views
Answer: A: #Reads Per Contig Information From Assemblies Other Than Velvet
updated 3.5 years ago by 38k • written 11.2 years ago by ★ 3.0k
2
votes
2
replies
856
views
In the reformat tool of BBmap what is the meaning of Read1_linear and Read1_log
BBmap quality reads
updated 3.6 years ago by 34k • written 3.6 years ago by ★ 3.0k
0
votes
0
replies
20k
views
Answer: A: R: Ape Making An Ultrametric, Rooted, Binary Tree Which Can Be Converted Into An
updated 3.6 years ago by 38k • written 10.3 years ago by ★ 3.0k
0
votes
2
replies
11k
views
Comment: C: Draw Minimum Spanning Tree (Mst) With Pie Charts In R
updated 3.8 years ago by 38k • written 11.0 years ago by ★ 3.0k
1
vote
1
reply
11k
views
Answer: A: Draw Minimum Spanning Tree (Mst) With Pie Charts In R
updated 3.8 years ago by 38k • written 11.0 years ago by ★ 3.0k
0
votes
1
reply
1.3k
views
Comment: C: Is there a way to calculate the maximum length at which the frequencies of k-mer
3.9 years ago by Joseph Hughes ★ 3.0k
0
votes
3
replies
1.3k
views
Is there a way to calculate the maximum length at which the frequencies of k-mers can be accurately estimated?
k-mer frequency
3.9 years ago by Joseph Hughes ★ 3.0k
1
vote
0
replies
1.4k
views
Job: Deadline 26th of March: Research Database Curator
HCV virus bioinfromatics curator data Job
4.0 years ago by Joseph Hughes ★ 3.0k
0
votes
0
replies
2.5k
views
Job: Bioinformatician position at the Centre for Virus Research - Glasgow, UK
HIV evolution phylogenetics outbreak Job
4.1 years ago by Joseph Hughes ★ 3.0k
0
votes
0
replies
1.3k
views
Answer: A: Phylonet -a taxa map parameter
4.2 years ago by Joseph Hughes ★ 3.0k
1
vote
0
replies
3.6k
views
Comment: C: How to give merged reads as input in spades
4.2 years ago by Joseph Hughes ★ 3.0k
0
votes
0
replies
2.2k
views
Answer: A: Any database for downloading cancer cell-lines transcriptome differential expres
4.2 years ago by Joseph Hughes ★ 3.0k
0
votes
0
replies
2.7k
views
Answer: A: How calculate CG content for each contig in an transcript assembly?
4.2 years ago by Joseph Hughes ★ 3.0k
2
votes
0
replies
2.0k
views
Answer: A: plot and show support values in consensus tree from n nj euclidean distance matr
4.2 years ago by Joseph Hughes ★ 3.0k
1
vote
1
reply
3.6k
views
Answer: A: How to give merged reads as input in spades
4.2 years ago by Joseph Hughes ★ 3.0k
0
votes
2
replies
1.1k
views
Comment: C: How to submit a Pilon fasta output to the RAST annotation service using Shell or
4.2 years ago by Joseph Hughes ★ 3.0k
0
votes
0
replies
887
views
Comment: C: Assembling ESTs and illumina reads
4.2 years ago by Joseph Hughes ★ 3.0k
1
vote
2
replies
887
views
Assembling ESTs and illumina reads
transcriptome ESTs Illumina de-novo
4.2 years ago by Joseph Hughes ★ 3.0k
0
votes
0
replies
1.7k
views
Answer: A: Is there a tool for making a synteny blocks of a gene with its downstream and up
4.3 years ago by Joseph Hughes ★ 3.0k
0
votes
0
replies
1.4k
views
Answer: A: Where to get Epimatrix algorithm from for epitope binding prediction?
4.3 years ago by Joseph Hughes ★ 3.0k
2
votes
1
reply
2.1k
views
Assembly With Phrap With Some Missing Quality Files.
assembly fasta quality
updated 4.6 years ago by 38k • written 12.8 years ago by ★ 3.0k
2
votes
2
replies
10k
views
Answer: A: Help With Understanding The Output Of Codeml From The Paml Package
updated 4.6 years ago by 38k • written 12.8 years ago by ★ 3.0k
5
votes
4
replies
10k
views
Help With Understanding The Output Of Codeml From The Paml Package
paml codeml selection
updated 4.6 years ago by 38k • written 13.0 years ago by ★ 3.0k
2
votes
0
replies
2.1k
views
Comment: C: Method for creating an EMBL formatted annotated sequence?
5.1 years ago by Joseph Hughes ★ 3.0k
0
votes
0
replies
3.0k
views
Comment: C: How to build an NJ tree with an IBS distance matrix computed by PLINK?
5.2 years ago by Joseph Hughes ★ 3.0k
1
vote
0
replies
1.2k
views
Answer: A: Porting genome annotations from virus RefSeq to new strain: any web tools?
5.2 years ago by Joseph Hughes ★ 3.0k
0
votes
0
replies
6.1k
views
Comment: C: kraken: unable to download the databases from ncbi
5.2 years ago by Joseph Hughes ★ 3.0k
2
votes
2
replies
6.1k
views
Answer: A: kraken: unable to download the databases from ncbi
5.2 years ago by Joseph Hughes ★ 3.0k
0
votes
0
replies
2.1k
views
Comment: C: LoFreq outputing no SNP?
5.2 years ago by Joseph Hughes ★ 3.0k
248 results • Page 1 of 5
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