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2.9k
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How to get Transcription End site (TES) via ensembl biomart ?
ensembl biomart
updated 7.7 years ago by ★ 2.4k • written 7.7 years ago by ▴ 590
7
votes
4
replies
6.2k
views
Why sequence is unmapped by bwa but position is given in Sam file and also can be aligned by blat ?
alignment sequence
updated 2.7 years ago by 45k • written 10.5 years ago by ▴ 590
0
votes
0
replies
1.3k
views
Estimate Fragment Size from Single End ChipSeq with (pysam, htseq lib or deeptools API)
deeptools pysam HTSEQ
7.8 years ago by ZheFrench ▴ 590
0
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0
replies
1.0k
views
How to get flanking intron sizes for genomic exon coordinates ?
gtf annotation
7.9 years ago by ZheFrench ▴ 590
0
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0
replies
11k
views
Comment: C: Trim galore terminates with exit signal: '256'
7.9 years ago by ZheFrench ▴ 590
0
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1
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11k
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Comment: A: Trim galore terminates with exit signal: '256'
7.9 years ago by ZheFrench ▴ 590
1
vote
6
replies
3.5k
views
Salmon and reads order in fastq in quasi-mapping-based mode
Salmon
updated 7.9 years ago by 89k • written 7.9 years ago by ▴ 590
4
votes
1
reply
2.0k
views
Access old version of ensembl via rest API
ensembl
updated 7.9 years ago by 24k • written 7.9 years ago by ▴ 590
0
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0
replies
2.6k
views
Comment: C: Jbrowse install via conda, how do you launch it ?
8.0 years ago by ZheFrench ▴ 590
1
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2
replies
2.6k
views
Jbrowse install via conda, how do you launch it ?
jbrowse conda
8.0 years ago by ZheFrench ▴ 590
0
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0
replies
4.6k
views
Comment: C: How Do you find constitutive exons in Ensembl or UCSC
8.1 years ago by ZheFrench ▴ 590
0
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0
replies
4.6k
views
Comment: C: How Do you find constitutive exons in Ensembl or UCSC
8.1 years ago by ZheFrench ▴ 590
7
votes
7
replies
4.6k
views
How Do you find constitutive exons in Ensembl or UCSC
exons constituve ensembl ucsc biomart
updated 8.1 years ago by 166k • written 8.1 years ago by ▴ 590
1
vote
1
reply
2.4k
views
multiqc : sum up several _Log.final.out into one
RNA-Seq
updated 8.2 years ago by ★ 1.5k • written 8.5 years ago by ▴ 590
0
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1
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4.2k
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Comment: C: deeptools PCA vs ChIPQC PCA
8.2 years ago by ZheFrench ▴ 590
8
votes
4
replies
4.2k
views
deeptools PCA vs ChIPQC PCA
deeptools ChIPQC Diffbind chipseq
updated 8.2 years ago by 105k • written 8.2 years ago by ▴ 590
0
votes
0
replies
1.9k
views
How to get flanking exon coordinate based on gencode gtf/gff or biomart
biomart gff annotation gtf gencode
8.2 years ago by ZheFrench ▴ 590
2
votes
1
reply
4.1k
views
Common Cutoff in TPM unit to filter out gene considered as low expressed.
RNA-Seq TPM Salmon
updated 8.7 years ago by 105k • written 8.7 years ago by ▴ 590
4
votes
1
reply
16k
views
How do you normalize Transcript per Million TPM to compare between samples ?
RNA-Seq TPM STAR salmon quantification
8.8 years ago by ZheFrench ▴ 590
0
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0
replies
24k
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Comment: C: Trimming TruSeq Universal Adapter (Trimmomatic)
8.9 years ago by ZheFrench ▴ 590
0
votes
0
replies
4.1k
views
SVA + DESEQ2 : Looking for batcheffect in RNA-SEQ
DESEQ2 SVA RNA-Seq Batch
9.0 years ago by ZheFrench ▴ 590
0
votes
0
replies
2.7k
views
Comment: C: UCSC Viewer : Change color of the reads for stranded RNASEQ as IGV "first-of-pa
9.0 years ago by ZheFrench ▴ 590
0
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2
replies
2.7k
views
UCSC Viewer : Change color of the reads for stranded RNASEQ as IGV "first-of-pair-strand
UCSC IGV visualisation
9.0 years ago by ZheFrench ▴ 590
0
votes
2
replies
3.6k
views
Comment: C: Do you use anti-sens reads for differential gene expression analysis with Strand
9.0 years ago by ZheFrench ▴ 590
0
votes
2
replies
2.6k
views
Is it correct to merge bigwig with TPM values from rnaSeq from different biological replicates for the same condition ?
RNA-Seq wig bigwg visualisation
updated 9.0 years ago by ★ 1.6k • written 9.0 years ago by ▴ 590
7
votes
4
replies
3.6k
views
Do you use anti-sens reads for differential gene expression analysis with Stranded Paired-End Library ?
RNA-Seq gene expression DE reads count STAR
updated 9.1 years ago by 105k • written 9.1 years ago by ▴ 590
0
votes
0
replies
6.3k
views
Comment: C: Snpsift extractFields : How Fields Annotation ANN[*].XX is working ?
9.8 years ago by ZheFrench ▴ 590
1
vote
2
replies
6.3k
views
Snpsift extractFields : How Fields Annotation ANN[*].XX is working ?
vcf Snpeff annotation
updated 3.3 years ago by 45k • written 9.9 years ago by ▴ 590
0
votes
1
reply
6.2k
views
Comment: C: Why sequence is unmapped by bwa but position is given in Sam file and also can
10.5 years ago by ZheFrench ▴ 590
5
votes
2
replies
5.0k
views
Samtools tview : what does underlined reads mean ? Secondary or Orphan
samtools
updated 2.7 years ago by 45k • written 10.5 years ago by ▴ 590
0
votes
0
replies
1.5k
views
How is computed Mean Coverage from Illumina MiseqReporter ?
sequencing
updated 3.4 years ago by 45k • written 10.6 years ago by ▴ 590
81 results • Page 2 of 2
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