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2
votes
1
reply
594
views
Randomly reduce size of reads but preserving the distribution
sequencing biostatistics
updated 18 months ago by 8.6k • written 18 months ago by ▴ 70
0
votes
0
replies
1.0k
views
Comment: Comment: Calculating fragment start and end in python
2.0 years ago by mhasa006 ▴ 70
0
votes
0
replies
1.0k
views
Comment: Comment: Calculating fragment start and end in python
2.0 years ago by mhasa006 ▴ 70
0
votes
1
reply
1.0k
views
Comment: Comment: Calculating fragment start and end in python
2.0 years ago by mhasa006 ▴ 70
0
votes
6
replies
1.0k
views
Calculating fragment start and end in python
python insert fragment
2.0 years ago by mhasa006 ▴ 70
3
votes
1
reply
3.3k
views
Write SAM file manually with pysam
bam python sam pysam alignment
updated 2.2 years ago by 14k • written 2.2 years ago by ▴ 70
2
votes
1
reply
875
views
Discrepancy in pysam fetching region
pysam python fetch bam
2.4 years ago by mhasa006 ▴ 70
2
votes
0
replies
875
views
Answer: Answer: Discrepancy in pysam fetching region
2.4 years ago by mhasa006 ▴ 70
0
votes
0
replies
2.2k
views
Comment: Comment: Write free text comment with @CO in BAM file
3.6 years ago by mhasa006 ▴ 70
0
votes
1
reply
2.2k
views
Comment: Comment: Write free text comment with @CO in BAM file
3.6 years ago by mhasa006 ▴ 70
0
votes
1
reply
2.2k
views
Comment: Comment: Write free text comment with @CO in BAM file
3.6 years ago by mhasa006 ▴ 70
0
votes
2
replies
2.2k
views
Comment: Comment: Write free text comment with @CO in BAM file
3.6 years ago by mhasa006 ▴ 70
0
votes
12
replies
2.2k
views
Write free text comment with @CO in BAM file
BAM hstjdk java
3.6 years ago by mhasa006 ▴ 70
2
votes
1
reply
1.2k
views
Soft Clipped read 3' end position
BAM htsjdk java
updated 3.8 years ago by ★ 2.9k • written 3.8 years ago by ▴ 70
1
vote
1
reply
732
views
Reading not properly paired reads from a BAM file
BAM java SAMReader
updated 4.0 years ago by 164k • written 4.0 years ago by ▴ 70
0
votes
0
replies
3.3k
views
Comment: C: VCF file REF Column outputs all 'N'
updated 4.9 years ago by 44k • written 8.9 years ago by ▴ 70
2
votes
1
reply
2.1k
views
Cancer data download with normal sample
cancer tcga cancer data normal
updated 5.7 years ago by 88k • written 5.7 years ago by ▴ 70
0
votes
5
replies
1.5k
views
BLAST against cancer genome
cancer BLAST gene genome
updated 5.9 years ago by 20 • written 5.9 years ago by ▴ 70
0
votes
1
reply
1.5k
views
Comment: C: BLAST against cancer genome
5.9 years ago by mhasa006 ▴ 70
0
votes
1
reply
1.5k
views
Comment: C: BLAST against cancer genome
5.9 years ago by mhasa006 ▴ 70
13
votes
14
replies
8.8k
views
Extract gff of a particular chromosome
gff3 chromosome IGV
updated 6.0 years ago by ▴ 10 • written 8.3 years ago by ▴ 70
1
vote
1
reply
1.2k
views
Efficient processing of a read and its mate from bam file
BAM htsjdk samtools java SAM
updated 6.2 years ago by 16k • written 6.2 years ago by ▴ 70
2
votes
1
reply
1.5k
views
Extract the mate pair information with htsjdk
BAM samtools htsjdk
updated 6.2 years ago by 164k • written 6.2 years ago by ▴ 70
2
votes
1
reply
1.9k
views
Extract the SAM File header section
SAM samtools htsjdk bam java
updated 6.2 years ago by 164k • written 6.2 years ago by ▴ 70
0
votes
0
replies
900
views
Forum: Cancer related problem with sequencing data and deep neural network
deep-neural-network sequence cancer RNA-Seq
updated 17 months ago by 44k • written 6.5 years ago by ▴ 70
3
votes
1
reply
1.8k
views
OG/Fusion, TSG/Fusion in CGC
cancer cgc og tsg
updated 6.7 years ago by 27k • written 6.7 years ago by ▴ 70
1
vote
0
replies
3.3k
views
Comment: C: Cancer research for computer science student
6.9 years ago by mhasa006 ▴ 70
10
votes
8
replies
3.3k
views
6 follow
Forum: Cancer research for computer science student
cancer research computer-science
updated 12 months ago by • 0 • written 6.9 years ago by ▴ 70
0
votes
0
replies
4.5k
views
Comment: C: Where To Find A Good Estimate Of The Background Mutation Rate In Rattus Norvegic
7.0 years ago by mhasa006 ▴ 70
0
votes
0
replies
2.8k
views
Comment: C: RSEM output file format
7.0 years ago by mhasa006 ▴ 70
2
votes
2
replies
2.8k
views
RSEM output file format
rsem RNA-Seq differential expression
updated 7.1 years ago by ▴ 840 • written 7.1 years ago by ▴ 70
0
votes
1
reply
1.6k
views
Comment: C: Dataset preparation for driver/passenger gene discovery
7.1 years ago by mhasa006 ▴ 70
2
votes
4
replies
1.6k
views
Dataset preparation for driver/passenger gene discovery
snv SNP gene cancer TCGA
updated 7.1 years ago by 88k • written 7.1 years ago by ▴ 70
4
votes
4
replies
2.5k
views
Nucleosome positioning dataset
dataset nucleosome nucleosome positioning
updated 2.0 years ago by 44k • written 9.2 years ago by ▴ 70
1
vote
2
replies
4.2k
views
Pulse information of PacBio data
Methylation PacBio
updated 23 months ago by 44k • written 9.3 years ago by ▴ 70
1
vote
3
replies
3.3k
views
VCF file REF Column outputs all 'N'
vcf SNP
updated 2.2 years ago by 44k • written 8.9 years ago by ▴ 70
0
votes
0
replies
2.5k
views
Comment: Comment: Nucleosome positioning dataset
updated 2.0 years ago by 44k • written 9.2 years ago by ▴ 70
1
vote
0
replies
2.6k
views
Scoring matrix of 3 sequence alignment
sequencing multiple-sequencing
updated 20 months ago by 44k • written 9.4 years ago by ▴ 70
7
votes
5
replies
3.6k
views
PacBio data assembly with Celera
PacBio Celera Assembly
updated 21 months ago by 44k • written 9.4 years ago by ▴ 70
0
votes
1
reply
3.6k
views
Comment: C: PacBio data assembly with Celera
9.4 years ago by mhasa006 ▴ 70
40 results • Page 1 of 1
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