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0
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48k
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Comment: Comment: Survival analysis with gene expression
8 months ago by rahel14350 ▴ 40
0
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0
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790
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No baf, cn1 and cn2 columns in cnvkit call output using vcf files
BAF cnvkit Minor-cn Major-cn
3.0 years ago by rahel14350 ▴ 40
1
vote
1
reply
757
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Deseq2 output to ActivePathways
DeSeq2 matrix ActivePathways pathways p-value
updated 3.5 years ago by ★ 2.1k • written 3.5 years ago by ▴ 40
0
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0
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1.4k
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Comment: C: ATACseq libraries differ in each run
5.3 years ago by rahel14350 ▴ 40
1
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2
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1.4k
views
ATACseq libraries differ in each run
ChIP-Seq sequencing ATAC-seq
updated 2.3 years ago by 45k • written 5.3 years ago by ▴ 40
0
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2
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1.8k
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Comment: C: Correlation between gene expression (RNAseq) and RRBS methylation data
5.6 years ago by rahel14350 ▴ 40
0
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6
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1.8k
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Correlation between gene expression (RNAseq) and RRBS methylation data
RNA-Seq RRBS Correlation R Methylation
updated 5.6 years ago by 22k • written 5.6 years ago by ▴ 40
0
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0
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1.8k
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Comment: C: Correlation between gene expression (RNAseq) and RRBS methylation data
5.6 years ago by rahel14350 ▴ 40
1
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4
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1.6k
views
Enhancer identification in mm10 from RRBS data in R
R RRBS enhancer mm10 visualization
5.6 years ago by rahel14350 ▴ 40
0
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0
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1.6k
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Answer: A: Enhancer identification in mm10 from RRBS data in R
5.6 years ago by rahel14350 ▴ 40
0
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1
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1.6k
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Comment: C: Enhancer identification in mm10 from RRBS data in R
5.6 years ago by rahel14350 ▴ 40
3
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4
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7.3k
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converting Bed to Wig
bed WIG BigWig overlap rtracklayer
updated 6.5 years ago by 36k • written 6.5 years ago by ▴ 40
0
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1
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7.3k
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Comment: C: converting Bed to Wig
6.5 years ago by rahel14350 ▴ 40
0
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3
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5.0k
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Applying machine learning algorithms on RNAseq data using R
RNAseq MLSeq machine learning SVM RF
6.6 years ago by rahel14350 ▴ 40
0
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1
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5.0k
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Comment: C: Applying machine learning algorithms on RNAseq data using MLSeq package or other
6.6 years ago by rahel14350 ▴ 40
2
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2
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1.8k
views
Percentages of samples mutated in individual tumour
Maftool GenVisR SNP frequency SNP percentage
updated 6.6 years ago by 20 • written 8.8 years ago by ▴ 40
1
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4
replies
2.8k
views
R packages for applying Data mining or machine learning algorithms (SNV,RF, Neural Network) on RNAseq data
RNA-Seq Data minning Machine Learning R packages
6.7 years ago by rahel14350 ▴ 40
0
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0
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2.8k
views
Comment: C: R packages for Data mining or machine learning of a set of differentialy express
6.7 years ago by rahel14350 ▴ 40
0
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0
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2.8k
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Comment: C: R packages for Data mining or machine learning of a set of differentialy express
6.7 years ago by rahel14350 ▴ 40
0
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0
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2.0k
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Comment: C: count tables from RNA-seq data on GEOmetadb
7.2 years ago by rahel14350 ▴ 40
2
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2
replies
2.0k
views
count tables from RNA-seq data on GEOmetadb
GEOmetadb RNA-Seq GEOquery SRAdb GEO
updated 7.2 years ago by 27k • written 7.2 years ago by ▴ 40
0
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0
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3.9k
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Comment: C: Differentially methylated regions (DMRs) and sites (DMCs) are not in the same re
7.3 years ago by rahel14350 ▴ 40
0
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0
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3.9k
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Comment: C: Differentially methylated regions (DMRs) and sites (DMCs) are not in the same re
7.3 years ago by rahel14350 ▴ 40
6
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4
replies
3.9k
views
Differentially methylated regions (DMRs) and sites (DMCs) are not in the same region
RRBS RnBeads Metilene Methylkit
updated 7.3 years ago by 105k • written 7.3 years ago by ▴ 40
1
vote
12
replies
2.7k
views
error in using LOLA enrichment analysis in RnBeads
RnBeads LOLA Enrichment RRBS
updated 7.4 years ago by 48k • written 7.4 years ago by ▴ 40
0
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0
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2.7k
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Comment: C: error in using LOLA enrichment analysis in RnBeads
7.4 years ago by rahel14350 ▴ 40
0
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1
reply
2.7k
views
Comment: C: error in using LOLA enrichment analysis in RnBeads
7.4 years ago by rahel14350 ▴ 40
0
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1
reply
2.7k
views
Comment: C: error in using LOLA enrichment analysis in RnBeads
7.4 years ago by rahel14350 ▴ 40
0
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1
reply
2.7k
views
Comment: C: error in using LOLA enrichment analysis in RnBeads
7.4 years ago by rahel14350 ▴ 40
0
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2
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2.7k
views
Comment: C: error in using LOLA enrichment analysis in RnBeads
updated 7.4 years ago by 48k • written 7.4 years ago by ▴ 40
1
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0
replies
2.4k
views
Comment: C: annotation of RRBS DMRs in RnBeads or other packages
7.7 years ago by rahel14350 ▴ 40
1
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1
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2.4k
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annotation of RRBS DMRs in RnBeads or other packages
RRBS DMRs RnBeads annotation Granges
7.7 years ago by rahel14350 ▴ 40
0
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0
replies
2.7k
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filtering (deleting) the overlapped genomic ranges from two GRangelist using findOverlaps
findOverlap GenomicRanges overlapped
7.9 years ago by rahel14350 ▴ 40
0
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0
replies
2.0k
views
KNIME workflow for data mining of protein expression data from TCGA
KNIME Data mining Protein TCGA Biomarker
8.1 years ago by rahel14350 ▴ 40
0
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0
replies
1.9k
views
missing values for beta values in Rnbeads (imputation of NAs)
RnBeads NA Beta values Methylation values
8.2 years ago by rahel14350 ▴ 40
1
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0
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3.8k
views
Answer: A: categorize DMRs by type (hyper - hypo methilated) in DMRcate or minfi
8.2 years ago by rahel14350 ▴ 40
1
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1
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3.8k
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categorize DMRs by type (hyper - hypo methilated) in DMRcate or minfi
DMRcate minfi Hyper methylated Hypo mehylated 450k
8.2 years ago by rahel14350 ▴ 40
0
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1
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2.2k
views
Comment: C: deconvolution of heterogenous cell types in RRBS data
8.2 years ago by rahel14350 ▴ 40
2
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3
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2.2k
views
deconvolution of heterogenous cell types in RRBS data
RRBS deconvolution methylome
8.2 years ago by rahel14350 ▴ 40
0
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0
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2.0k
views
Answer: Answer: RRBS data analysis using RnBeads give Scan() error
updated 18 months ago by 45k • written 8.2 years ago by ▴ 40
0
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1
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2.0k
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RRBS data analysis using RnBeads give Scan() error
RRBS 450k RnBeads
updated 18 months ago by 45k • written 8.2 years ago by ▴ 40
0
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0
replies
2.8k
views
Comment: C: biomarkers identification by data mining of public genomic tumour databases in R
8.3 years ago by rahel14350 ▴ 40
1
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4
replies
2.8k
views
biomarkers identification by data mining of public genomic tumour databases in R or Python
Data mining R TCGA biomarker python
updated 8.3 years ago by • 0 • written 8.3 years ago by ▴ 40
0
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0
replies
2.8k
views
Comment: C: Data mining of bio-medical databases in R
8.3 years ago by rahel14350 ▴ 40
0
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0
replies
3.2k
views
Comment: C: visualization of DMRcate or minfi output on UCSC
8.4 years ago by rahel14350 ▴ 40
0
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1
reply
3.2k
views
Comment: C: visualization of DMRcate or minfi output on UCSC
8.4 years ago by rahel14350 ▴ 40
0
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1
reply
3.2k
views
Comment: C: visualization of DMRcate or minfi output on UCSC
8.4 years ago by rahel14350 ▴ 40
3
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6
replies
3.2k
views
visualization of DMRcate or minfi output on UCSC
DMRcate minfi 450k Track hub UCSC
updated 8.4 years ago by ▴ 130 • written 8.4 years ago by ▴ 40
0
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0
replies
3.4k
views
Comment: C: how to do noob+funnorm+bmiq normalization together in minfi or RnBeads?
8.5 years ago by rahel14350 ▴ 40
1
vote
3
replies
3.4k
views
how to do noob+funnorm+bmiq normalization together in minfi or RnBeads?
minfi RnBeads preprocessFunnorm BMIQ 450k
8.5 years ago by rahel14350 ▴ 40
68 results • Page 1 of 2
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