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12
votes
7
replies
8.4k
views
6 follow
BAM compression: .tar.gz = same size as before?
bam compression tar gz
updated 4.2 years ago by ▴ 240 • written 8.4 years ago by ▴ 220
2
votes
1
reply
3.7k
views
Comment: C: GATK4 best practices: 1500 lines of code ... !?
5.2 years ago by Marvin ▴ 220
9
votes
6
replies
3.7k
views
GATK4 best practices: 1500 lines of code ... !?
GATK4
updated 2.4 years ago by 45k • written 5.2 years ago by ▴ 220
0
votes
0
replies
2.3k
views
Comment: C: Complementary strand in cluster generation
5.8 years ago by Marvin ▴ 220
0
votes
0
replies
7.8k
views
Comment: C: Does allele refer to the entire gene sequence or one position of the gene sequen
5.8 years ago by Marvin ▴ 220
0
votes
0
replies
1.9k
views
Comment: C: Is 1 deleted T in a T stretch always detected, assuming enough coverage of cours
5.9 years ago by Marvin ▴ 220
2
votes
7
replies
1.9k
views
Is 1 deleted T in a T stretch always detected, assuming enough coverage of course?
stretch mapper caller
updated 5.9 years ago by 89k • written 5.9 years ago by ▴ 220
0
votes
1
reply
1.9k
views
Comment: C: Is 1 deleted T in a T stretch always detected, assuming enough coverage of cours
5.9 years ago by Marvin ▴ 220
0
votes
1
reply
1.9k
views
Comment: C: Is 1 deleted T in a T stretch always detected, assuming enough coverage of cours
5.9 years ago by Marvin ▴ 220
2
votes
4
replies
3.5k
views
GTF file: CDS feature is exon 1, but has frame = 1 or 2
gtf cds exon
updated 6.0 years ago by 20 • written 8.4 years ago by ▴ 220
0
votes
0
replies
4.9k
views
Comment: Comment: NGS mapper that supports IUPAC reference
updated 3.0 years ago by 45k • written 10.3 years ago by ▴ 220
0
votes
1
reply
10k
views
Comment: C: Difference between various GRCH 37 releases?
7.0 years ago by Marvin ▴ 220
0
votes
1
reply
10k
views
Comment: C: Difference between various GRCH 37 releases?
7.0 years ago by Marvin ▴ 220
16
votes
10
replies
15k
views
8 follow
GRCh37.p13 download at NCBI FTP?
ncbi reference grch37
updated 20 months ago by • 0 • written 7.1 years ago by ▴ 220
4
votes
10
replies
3.7k
views
snpEff: wrong HGVS output?
snpeff hgvs
updated 7.1 years ago by 48k • written 7.2 years ago by ▴ 220
0
votes
0
replies
3.7k
views
Comment: C: snpEff: wrong HGVS output?
7.1 years ago by Marvin ▴ 220
0
votes
0
replies
15k
views
Comment: C: GRCh37.p13 download at NCBI FTP?
7.1 years ago by Marvin ▴ 220
1
vote
0
replies
3.7k
views
Comment: C: snpEff: wrong HGVS output?
7.1 years ago by Marvin ▴ 220
0
votes
1
reply
3.7k
views
Comment: C: snpEff: wrong HGVS output?
7.2 years ago by Marvin ▴ 220
0
votes
1
reply
3.7k
views
Comment: C: snpEff: wrong HGVS output?
7.2 years ago by Marvin ▴ 220
0
votes
0
replies
3.7k
views
Comment: C: snpEff: wrong HGVS output?
7.2 years ago by Marvin ▴ 220
7
votes
5
replies
10k
views
Illumina: Why does a flow cell have lanes?
sequencing
updated 7.2 years ago by 154k • written 7.2 years ago by ▴ 220
0
votes
0
replies
2.4k
views
Comment: C: why do bed files not contain information about the reference?
7.2 years ago by Marvin ▴ 220
12
votes
7
replies
2.4k
views
why do bed files not contain information about the reference?
bed hg19 hg38 reference
updated 7.3 years ago by 9.0k • written 7.3 years ago by ▴ 220
0
votes
0
replies
1.9k
views
Comment: C: SNPeff method-no reference genome
8.3 years ago by Marvin ▴ 220
0
votes
0
replies
2.0k
views
Comment: C: IGV: Show reference sequence?
8.3 years ago by Marvin ▴ 220
0
votes
2
replies
2.0k
views
IGV: Show reference sequence?
igv reference
8.3 years ago by Marvin ▴ 220
3
votes
4
replies
2.4k
views
GATK: SNP coverage too high?
gatk
updated 8.3 years ago by ★ 5.0k • written 8.3 years ago by ▴ 220
0
votes
0
replies
3.5k
views
Comment: C: GTF file: CDS feature is exon 1, but has frame = 1 or 2
8.3 years ago by Marvin ▴ 220
0
votes
1
reply
3.5k
views
Comment: C: GTF file: CDS feature is exon 1, but has frame = 1 or 2
8.3 years ago by Marvin ▴ 220
0
votes
2
replies
2.5k
views
bcftools consensus: include the OVERHANG
bcftools consensus samtools mpileup
updated 9.6 years ago by ▴ 60 • written 10.2 years ago by ▴ 220
1
vote
1
reply
2.1k
views
454 sequencing: DETAILED explanation??
454
updated 3.1 years ago by 45k • written 10.2 years ago by ▴ 220
0
votes
1
reply
1.8k
views
Comment: C: bwa: Produces poor mapping, reports it as good?
10.2 years ago by Marvin ▴ 220
0
votes
0
replies
1.8k
views
Comment: C: bwa: Produces poor mapping, reports it as good?
10.2 years ago by Marvin ▴ 220
3
votes
4
replies
1.8k
views
bwa: Produces poor mapping, reports it as good?
bwa
updated 3.1 years ago by 45k • written 10.2 years ago by ▴ 220
0
votes
0
replies
2.9k
views
I don't understand bcftools call behaviour
call bcftools
updated 3.1 years ago by 45k • written 10.2 years ago by ▴ 220
0
votes
0
replies
3.9k
views
Comment: C: Samtools mpileup: read base column symbols
10.3 years ago by Marvin ▴ 220
0
votes
1
reply
3.9k
views
Comment: C: Samtools mpileup: read base column symbols
10.3 years ago by Marvin ▴ 220
1
vote
4
replies
3.9k
views
Samtools mpileup: read base column symbols
samtools mpileup
updated 3.0 years ago by 45k • written 10.3 years ago by ▴ 220
3
votes
1
reply
4.9k
views
Answer: Answer: NGS mapper that supports IUPAC reference
updated 3.0 years ago by 45k • written 10.3 years ago by ▴ 220
10
votes
9
replies
4.9k
views
NGS mapper that supports IUPAC reference
map iupac
updated 3.0 years ago by 45k • written 10.3 years ago by ▴ 220
4
votes
4
replies
10k
views
FASTA of an arbitrary genome: Is the first base the 5' end?
5' 3' fasta
updated 3.0 years ago by 45k • written 10.3 years ago by ▴ 220
0
votes
0
replies
4.9k
views
Comment: C: NGS mapper that supports IUPAC reference
10.3 years ago by Marvin ▴ 220
7
votes
4
replies
5.1k
views
IGV genome browser problems
igv
updated 2.9 years ago by 45k • written 10.3 years ago by ▴ 220
1
vote
0
replies
4.9k
views
Comment: Comment: NGS mapper that supports IUPAC reference
updated 3.0 years ago by 45k • written 10.3 years ago by ▴ 220
0
votes
0
replies
6.3k
views
Comment: Comment: Get the consensus sequence ... (I know, should be easy)
updated 2.9 years ago by 45k • written 10.3 years ago by ▴ 220
0
votes
6
replies
6.3k
views
Get the consensus sequence ... (I know, should be easy)
bcftools samtools tabix
updated 2.9 years ago by 45k • written 10.3 years ago by ▴ 220
1
vote
1
reply
5.1k
views
Comment: Comment: IGV genome browser problems
updated 2.9 years ago by 45k • written 10.3 years ago by ▴ 220
0
votes
1
reply
4.1k
views
Comment: C: Split BAM into 1 BAM per contig
10.4 years ago by Marvin ▴ 220
0
votes
0
replies
4.1k
views
Comment: C: Split BAM into 1 BAM per contig
10.4 years ago by Marvin ▴ 220
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