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Variant Calling output problem GL000 contigs
mutect vardict varscan freebayes
8.4 years ago by morovatunc ▴ 560
1
vote
2
replies
1.6k
views
CRISPR screen 0 count values
CRISPR-Screen
8.4 years ago by morovatunc ▴ 560
1
vote
0
replies
1.1k
views
Predicting gene expression of a cancer from the expression of subset
RNA-Seq
8.4 years ago by morovatunc ▴ 560
0
votes
0
replies
1.7k
views
HOMER mergePeaks --matrix output?
ChIP-Seq
8.4 years ago by morovatunc ▴ 560
1
vote
4
replies
1.9k
views
Interpreting 2 RNA-seq data with different lengths
RNA-Seq DEseq
updated 8.5 years ago by 6.6k • written 8.5 years ago by ▴ 560
0
votes
1
reply
2.5k
views
VarDictJava BED file input Problem
VarDict WGS
updated 3.0 years ago by 44k • written 8.6 years ago by ▴ 560
0
votes
2
replies
3.0k
views
TCGA RNAseq normal and tumor samples problem
RNA-Seq TCGA
updated 8.5 years ago by 8.3k • written 8.5 years ago by ▴ 560
8
votes
4
replies
3.8k
views
ICGC Variant Calling Pipelines
Mutation-Calling ICGC
updated 2.2 years ago by 44k • written 8.6 years ago by ▴ 560
0
votes
2
replies
1.9k
views
About Dream Challenge Somatic Mutation Calling Algorithms
Somatic-Mutations SNV DREAM
updated 2.1 years ago by 44k • written 8.7 years ago by ▴ 560
0
votes
0
replies
2.4k
views
HOMER mergePeaks -d value definition
ChIP-Seq HOMER
updated 2.1 years ago by 44k • written 8.7 years ago by ▴ 560
1
vote
2
replies
2.0k
views
Eland format to Bed format?
ChIP-Seq GEO BED
updated 2.1 years ago by 44k • written 8.8 years ago by ▴ 560
0
votes
4
replies
3.5k
views
Homer mergePeaks : Cannot calculate the mean of overlapped peaks
ChIP-Seq Homer
updated 2.1 years ago by 44k • written 8.8 years ago by ▴ 560
1
vote
6
replies
2.5k
views
What statistical test should I apply to prove my high confidence values are part of low confidence values?
chip-seq bed
updated 2.1 years ago by 44k • written 8.8 years ago by ▴ 560
0
votes
0
replies
1.6k
views
CGhub Whole Genome Sequencing Data sequencing info
WGS cghub TGCA
updated 2.1 years ago by 44k • written 8.8 years ago by ▴ 560
0
votes
0
replies
2.2k
views
CrossMap Genome Coordinate Converter, Start Location is further than End location Problem
hg18 crossmap genome-coordinates hg19
updated 2.1 years ago by 44k • written 8.9 years ago by ▴ 560
2
votes
8
replies
2.8k
views
multiIntersectBed How can I implement chip seq peak values with the overlaps?
ChIP-Seq bedtools
updated 2.1 years ago by 44k • written 8.9 years ago by ▴ 560
2
votes
5
replies
3.1k
views
Chip Seq Peaks/ Enrichment Profilig?
next-gen ChIP-Seq seq
updated 2.0 years ago by 44k • written 8.9 years ago by ▴ 560
6
votes
4
replies
2.2k
views
about editing SAM/BAM files
bam sam
updated 2.0 years ago by 44k • written 9.0 years ago by ▴ 560
0
votes
2
replies
2.6k
views
NimbleGen MicroArray Analysis via ArrayExpress Data base
Microarray Bioconductor ArrayExpress nimblegen
updated 22 months ago by 44k • written 9.2 years ago by ▴ 560
0
votes
1
reply
3.0k
views
Evaluating Differential Expressed Genes from NimbleGen Pair Data using R oligo package
R Expression-Analysis nimblegen
updated 21 months ago by 44k • written 9.2 years ago by ▴ 560
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