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1.5k
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Calculating mutation significance of each location in a BED file.
VCF
7.2 years ago by morovatunc ▴ 550
1
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1
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3.6k
views
CRISPR screen Trimming with mageck low mappability
crispr screen trimming mapping
updated 7.2 years ago by 20 • written 7.4 years ago by ▴ 550
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1
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2.2k
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Structural Variant Visualisation from VCF source.
RNA-Seq Circos VCF
7.2 years ago by morovatunc ▴ 550
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0
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2.6k
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Comment: C: Any idea about validating bedtools shuffle did what I desired?
7.2 years ago by morovatunc ▴ 550
1
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1
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2.6k
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Comment: C: Any idea about validating bedtools shuffle did what I desired?
7.2 years ago by morovatunc ▴ 550
9
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5
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2.6k
views
Any idea about validating bedtools shuffle did what I desired?
bedtools chip-seq
updated 7.2 years ago by 5.0k • written 7.2 years ago by ▴ 550
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1
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47k
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Comment: C: Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
7.2 years ago by morovatunc ▴ 550
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0
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6.1k
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Comment: C: Visualization of ChIP-Seq peak overlaps using HOMER mergePeaks and UpSetR
7.2 years ago by morovatunc ▴ 550
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1
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6.1k
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Answer: A: Visualization of ChIP-Seq peak overlaps using HOMER mergePeaks and UpSetR
7.2 years ago by morovatunc ▴ 550
3
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1
reply
2.4k
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Answer: A: Binding sites of annotated chip-seq peak files
7.3 years ago by morovatunc ▴ 550
1
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4
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2.8k
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IGV Visualisation Problem
IGV VCF snpsift vcftools
7.3 years ago by morovatunc ▴ 550
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0
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2.8k
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Comment: C: IGV Visualisation Problem
7.3 years ago by morovatunc ▴ 550
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0
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2.8k
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Comment: C: IGV Visualisation Problem
7.3 years ago by morovatunc ▴ 550
0
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6
replies
4.4k
views
Finding Overlapping Regions of Chip-Seq peaks, then visualising it.
ChIP-Seq Venn
updated 15 months ago by 41k • written 8.1 years ago by ▴ 550
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1
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1.2k
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Answer: A: Where to find a list of known SNP's for a given genomic region
7.3 years ago by morovatunc ▴ 550
0
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0
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1.3k
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How to favor consistently occurring rare event in CRISPR screen analysis
CRISPR
7.3 years ago by morovatunc ▴ 550
0
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0
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2.2k
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Comment: C: How to obtain peak height values from a bed file?
7.4 years ago by morovatunc ▴ 550
0
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2
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2.2k
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How to obtain peak height values from a bed file?
bedtools chip-seq
7.4 years ago by morovatunc ▴ 550
0
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0
replies
2.1k
views
Comment: C: Why does UCSC gap definitions disagree with the Ns in reference genome?
7.4 years ago by morovatunc ▴ 550
0
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1
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1.4k
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Comment: C: SnpSift match overlapping mutations with a given bed file
7.4 years ago by morovatunc ▴ 550
0
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0
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1.2k
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Unlocalized contig visualisation and filtration for bed files.
bedtools Bed
7.4 years ago by morovatunc ▴ 550
0
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1
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1.4k
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Comment: C: SnpSift match overlapping mutations with a given bed file
7.4 years ago by morovatunc ▴ 550
1
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5
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1.4k
views
SnpSift match overlapping mutations with a given bed file
snpsift vcftools
7.4 years ago by morovatunc ▴ 550
4
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6
replies
3.9k
views
IGV peak Visualation Problem
ChIP-Seq IGv
updated 15 months ago by 41k • written 8.1 years ago by ▴ 550
1
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1
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3.9k
views
Answer: A: Using SnpEff to extract relevant fields
7.4 years ago by morovatunc ▴ 550
0
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0
replies
1.4k
views
Vcftools where is my log file output ?
vcftools
7.4 years ago by morovatunc ▴ 550
1
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0
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5.8k
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Comment: C: Beginner in Bioinformatics / computational biology field
7.4 years ago by morovatunc ▴ 550
1
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0
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5.8k
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Comment: C: Beginner in Bioinformatics / computational biology field
7.4 years ago by morovatunc ▴ 550
0
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0
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1.8k
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Comment: C: removing dbsnp for indel vcf
7.4 years ago by morovatunc ▴ 550
1
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2
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1.8k
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removing dbsnp for indel vcf
vcf
7.4 years ago by morovatunc ▴ 550
0
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0
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1.9k
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VCF quaility score/filter assessment for ICGC vcf (by sanger pipeline)
vcf
7.5 years ago by morovatunc ▴ 550
1
vote
1
reply
1.4k
views
Coming with a result with many VCF files?
VCF variant-calling mutation-calling
updated 7.5 years ago by ★ 5.2k • written 7.6 years ago by ▴ 550
0
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0
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2.5k
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Comment: C: VCF filtration problem No genotype information
7.5 years ago by morovatunc ▴ 550
0
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5
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2.5k
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VCF filtration problem No genotype information
Vcftools snpEff
updated 7.5 years ago by 41k • written 7.5 years ago by ▴ 550
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2
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1.4k
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Comment: C: Increasing widths of the peaks in a bed file from ChIP-seq
7.5 years ago by morovatunc ▴ 550
0
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1
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1.4k
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Comment: C: Increasing widths of the peaks in a bed file from ChIP-seq
7.5 years ago by morovatunc ▴ 550
0
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1
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1.4k
views
Comment: C: Increasing widths of the peaks in a bed file from ChIP-seq
7.5 years ago by morovatunc ▴ 550
0
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0
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1.4k
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Comment: C: Increasing widths of the peaks in a bed file from ChIP-seq
7.5 years ago by morovatunc ▴ 550
4
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9
replies
1.4k
views
Increasing widths of the peaks in a bed file from ChIP-seq
ChIP-Seq vcftools mutation calling
updated 7.5 years ago by 104k • written 7.5 years ago by ▴ 550
0
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1
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4.2k
views
Comment: C: GL000201,GL000202... etc What are these?
7.5 years ago by morovatunc ▴ 550
0
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0
replies
1.4k
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TCGA RNAseq Clustering validation
RNA-Seq
7.6 years ago by morovatunc ▴ 550
0
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0
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1.5k
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Answer: A: how to "dope" a FASTQ file with known variants
7.6 years ago by morovatunc ▴ 550
11
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4
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7.4k
views
Visualization of Homer mergePeaks output Venn?
overlap Venn euler HOMER ChIP-Seq
updated 15 months ago by 41k • written 8.1 years ago by ▴ 550
0
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1
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2.4k
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Answer: A: Any experience using SomaticSeq for RNAseq SNV?
7.6 years ago by morovatunc ▴ 550
0
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1
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4.2k
views
Comment: C: GL000201,GL000202... etc What are these?
7.6 years ago by morovatunc ▴ 550
0
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0
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7.4k
views
Comment: C: Visualization of Homer mergePeaks output Venn?
7.6 years ago by morovatunc ▴ 550
9
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4
replies
4.2k
views
GL000201,GL000202... etc What are these?
WGS ICGC BAM
updated 7.6 years ago by 13k • written 7.6 years ago by ▴ 550
0
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1
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1.9k
views
Comment: C: HOMER mergepeaks matrix interpreatation
7.6 years ago by morovatunc ▴ 550
1
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1
reply
1.7k
views
Mutational Calling with SomaticSeq
NGS somatic-mutations
updated 16 months ago by 41k • written 7.8 years ago by ▴ 550
2
votes
8
replies
1.9k
views
HOMER mergepeaks matrix interpreatation
ChIP-Seq
updated 7.6 years ago by 11k • written 7.6 years ago by ▴ 550
203 results • Page 3 of 5
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