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331
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no matching between KEGG "nt" and "N" entries ?!
pathway KEGG network
2.2 years ago by erica.fary ▴ 20
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0
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377
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KEGG pathway: "nt..." network filtering from KEGG entry to KEGG pathway figure
pathway KEGG
2.2 years ago by erica.fary ▴ 20
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648
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limma: correct design matrix and topTable for 2 way comparison
edge R differential RNA-seq limma expression
2.5 years ago by erica.fary ▴ 20
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0
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825
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Comment: Comment: TCGA data: low / high grade ovarian cancer
2.6 years ago by erica.fary ▴ 20
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2
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825
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TCGA data: low / high grade ovarian cancer
recout2 TCGAbiolinks TCGA R
2.6 years ago by erica.fary ▴ 20
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1
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1.2k
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Download TCGA and GTEX data from Xena toilHub for (full genome but for 1 cancer/tissue type)
GTEX UCSCXenaTools TCGA RNA-seq Xena
updated 2.6 years ago by ★ 5.8k • written 2.6 years ago by ▴ 20
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1
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1.4k
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Comment: Comment: Differential expression analysis between normal/cancer on recount2 data
2.6 years ago by erica.fary ▴ 20
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3
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1.4k
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Differential expression analysis between normal/cancer on recount2 data
recount GTEX TCGA RNA-seq batch
updated 2.6 years ago by 87k • written 2.6 years ago by ▴ 20
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1
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1.5k
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TCGAbiolinks: which normalization before differential expression analysis (legacy=TRUE vs. legacy=FALSE)
TCGAbiolinks limma TCGA RNA-seq normalization
updated 2.6 years ago by ★ 1.6k • written 2.6 years ago by ▴ 20
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0
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568
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Comparison of ChIP-seq tracks from two cell lines using FC over control (ENCODE data)
ChIP-seq H3K27ac bigWig ENCODE
3.1 years ago by erica.fary ▴ 20
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1
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3.0k
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Comment: C: Retrieve nt sequence of chloroplaste genes (NCBI query with gene name and taxon
7.5 years ago by erica.fary ▴ 20
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3
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3.0k
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Retrieve nt sequence of chloroplaste genes (NCBI query with gene name and taxon ID)
ncbi database gene sequence
7.5 years ago by erica.fary ▴ 20
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0
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2.7k
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Pairwise distances DNA sequences (K80 model of DNA evolution) [Python]
phylogeny python sequence
updated 20 months ago by 43k • written 8.4 years ago by ▴ 20
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0
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1.8k
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Export phylogenetic tree from "official" trees available on internet
phylogeny python
updated 8.6 years ago by 20 • written 8.6 years ago by ▴ 20
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1
reply
1.5k
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Retrieve taxon age from Ensembl
ensembl gene-age
updated 18 months ago by 43k • written 8.7 years ago by ▴ 20
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0
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1.6k
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retrieve phyletic age of genes from ensembl database
ensembl gene database
8.7 years ago by erica.fary ▴ 20
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