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492
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no matching between KEGG "nt" and "N" entries ?!
pathway KEGG network
3.2 years ago by erica.fary ▴ 20
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0
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522
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KEGG pathway: "nt..." network filtering from KEGG entry to KEGG pathway figure
pathway KEGG
3.2 years ago by erica.fary ▴ 20
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0
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786
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limma: correct design matrix and topTable for 2 way comparison
edge R differential RNA-seq limma expression
3.5 years ago by erica.fary ▴ 20
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1.1k
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Comment: Comment: TCGA data: low / high grade ovarian cancer
3.6 years ago by erica.fary ▴ 20
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2
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1.1k
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TCGA data: low / high grade ovarian cancer
recout2 TCGAbiolinks TCGA R
3.6 years ago by erica.fary ▴ 20
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1
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1.5k
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Download TCGA and GTEX data from Xena toilHub for (full genome but for 1 cancer/tissue type)
GTEX UCSCXenaTools TCGA RNA-seq Xena
updated 3.6 years ago by ★ 7.4k • written 3.6 years ago by ▴ 20
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1
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1.8k
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Comment: Comment: Differential expression analysis between normal/cancer on recount2 data
3.6 years ago by erica.fary ▴ 20
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3
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1.8k
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Differential expression analysis between normal/cancer on recount2 data
recount GTEX TCGA RNA-seq batch
updated 3.6 years ago by 89k • written 3.6 years ago by ▴ 20
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1
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1.8k
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TCGAbiolinks: which normalization before differential expression analysis (legacy=TRUE vs. legacy=FALSE)
TCGAbiolinks limma TCGA RNA-seq normalization
updated 3.6 years ago by ★ 1.7k • written 3.6 years ago by ▴ 20
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0
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721
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Comparison of ChIP-seq tracks from two cell lines using FC over control (ENCODE data)
ChIP-seq H3K27ac bigWig ENCODE
4.1 years ago by erica.fary ▴ 20
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1
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3.3k
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Comment: C: Retrieve nt sequence of chloroplaste genes (NCBI query with gene name and taxon
8.5 years ago by erica.fary ▴ 20
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3
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3.3k
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Retrieve nt sequence of chloroplaste genes (NCBI query with gene name and taxon ID)
ncbi database gene sequence
8.5 years ago by erica.fary ▴ 20
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0
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2.8k
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Pairwise distances DNA sequences (K80 model of DNA evolution) [Python]
phylogeny python sequence
updated 2.7 years ago by 45k • written 9.4 years ago by ▴ 20
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0
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1.9k
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Export phylogenetic tree from "official" trees available on internet
phylogeny python
updated 9.5 years ago by 20 • written 9.6 years ago by ▴ 20
1
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1
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1.7k
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Retrieve taxon age from Ensembl
ensembl gene-age
updated 2.5 years ago by 45k • written 9.7 years ago by ▴ 20
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0
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1.7k
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retrieve phyletic age of genes from ensembl database
ensembl gene database
9.7 years ago by erica.fary ▴ 20
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