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Comment:
Comment: Question about aggregating p values from different DE analysis methods for the s
13 months ago by
mmitra
▴ 60
8
votes
2
replies
761
views
Question about aggregating p values from different DE analysis methods for the same RNA-seq dataset
fisher-test
p-value
RNA-seq
13 months ago by
mmitra
▴ 60
0
votes
0
replies
2.0k
views
Comment:
Comment: Batch effect correction & normalization after training/test split for gene expre
13 months ago by
mmitra
▴ 60
0
votes
0
replies
841
views
Comment:
Comment: Retrieve transcription factors from gene set using biomaRt
20 months ago by
mmitra
▴ 60
0
votes
0
replies
2.0k
views
Comment:
Comment: Batch effect correction & normalization after training/test split for gene expre
20 months ago by
mmitra
▴ 60
0
votes
0
replies
2.0k
views
Comment:
Comment: Batch effect correction & normalization after training/test split for gene expre
20 months ago by
mmitra
▴ 60
0
votes
5
replies
2.0k
views
Batch effect correction & normalization after training/test split for gene expression data
RNA-seq
batch-effect
normalization
updated 8 days ago by
Ram
43k • written 20 months ago by
mmitra
▴ 60
1
vote
0
replies
726
views
Comment:
Comment: Feature selection for a binary classifier using mixed cancer type samples
20 months ago by
mmitra
▴ 60
3
votes
2
replies
726
views
Feature selection for a binary classifier using mixed cancer type samples
genes
training-test
mixed
samples
split
feature
DE
selection
classifier
20 months ago by
mmitra
▴ 60
0
votes
0
replies
889
views
Comment:
Comment: Differential peak analysis for ATAC-seq using transformed and normalized CPM ma
21 months ago by
mmitra
▴ 60
6
votes
3
replies
889
views
Differential peak analysis for ATAC-seq using transformed and normalized CPM matrix
ATAC-seq
differential
normalization
matrix
analysis
CPM
21 months ago by
mmitra
▴ 60
7
votes
10
replies
2.7k
views
6 follow
Batch effect correction to compare differentially expressed genes across datasets
batch
batch-effect
DESeq2
rna-seq
updated 8 days ago by
Ram
43k • written 2.0 years ago by
mmitra
▴ 60
0
votes
0
replies
2.7k
views
Comment:
Comment: Batch effect correction to compare differentially expressed genes across dataset
2.0 years ago by
mmitra
▴ 60
0
votes
0
replies
2.7k
views
Comment:
Comment: Batch effect correction to compare differentially expressed genes across dataset
2.0 years ago by
mmitra
▴ 60
0
votes
1
reply
2.7k
views
Comment:
Comment: Batch effect correction to compare differentially expressed genes across dataset
2.0 years ago by
mmitra
▴ 60
0
votes
1
reply
3.5k
views
Comment:
C: Tophat 'prep_reads error": beginning of quality values record not found!
updated 4.4 years ago by
Ram
43k • written 8.6 years ago by
mmitra
▴ 60
0
votes
0
replies
2.3k
views
Comment:
C: Differential gene expression analysis: how different could be the number of samp
5.1 years ago by
mmitra
▴ 60
1
vote
2
replies
2.3k
views
Differential gene expression analysis: how different could be the number of samples for the two conditions being compared?
rna-seq
deseq2
number of samples
5.1 years ago by
mmitra
▴ 60
0
votes
0
replies
1.8k
views
Comment:
C: How to perform lncRNA differential gene expression analysis (unstranded)?
5.3 years ago by
mmitra
▴ 60
1
vote
2
replies
1.8k
views
How to perform lncRNA differential gene expression analysis (unstranded)?
RNA-Seq
DEseq2
lncRNA
unstranded
lincRNAs
updated 5.3 years ago by
JC
13k • written 5.3 years ago by
mmitra
▴ 60
0
votes
0
replies
2.0k
views
Comment:
C: Converting .bowtie files to .sam
updated 5.6 years ago by
GenoMax
141k • written 5.6 years ago by
mmitra
▴ 60
0
votes
1
reply
2.0k
views
Comment:
C: Converting .bowtie files to .sam
5.6 years ago by
mmitra
▴ 60
0
votes
5
replies
2.0k
views
Converting .bowtie files to .sam
ChIP-Seq
sequencing
alignment
bowtie
sam
5.6 years ago by
mmitra
▴ 60
0
votes
0
replies
10k
views
Comment:
C: Trim Poly-A Tail And Trailing Nucleotides
6.4 years ago by
mmitra
▴ 60
0
votes
0
replies
10k
views
Comment:
C: Trim Poly-A Tail And Trailing Nucleotides
6.5 years ago by
mmitra
▴ 60
0
votes
1
reply
10k
views
Comment:
C: Trim Poly-A Tail And Trailing Nucleotides
6.5 years ago by
mmitra
▴ 60
1
vote
0
replies
2.5k
views
Comment:
C: Obtain Ensembl transcript ids that contain retained introns
7.3 years ago by
mmitra
▴ 60
0
votes
1
reply
2.5k
views
Comment:
C: Obtain Ensembl transcript ids that contain retained introns
7.3 years ago by
mmitra
▴ 60
0
votes
1
reply
2.5k
views
Comment:
C: Obtain Ensembl transcript ids that contain retained introns
7.3 years ago by
mmitra
▴ 60
0
votes
0
replies
2.5k
views
Comment:
C: Obtain Ensembl transcript ids that contain retained introns
7.3 years ago by
mmitra
▴ 60
4
votes
8
replies
2.5k
views
Obtain Ensembl transcript ids that contain retained introns
RNA-Seq
Ensembl
Retained introns
Splicing
updated 7.3 years ago by
Chun-Jie Liu
▴ 280 • written 7.3 years ago by
mmitra
▴ 60
0
votes
0
replies
23k
views
Comment:
C: Bed File With Introns Only
7.4 years ago by
mmitra
▴ 60
2
votes
0
replies
6.1k
views
Answer:
A: [Beginner] Introduction to bioinformatics file types
8.6 years ago by
mmitra
▴ 60
0
votes
1
reply
3.5k
views
Comment:
C: Tophat 'prep_reads error": beginning of quality values record not found!
8.6 years ago by
mmitra
▴ 60
0
votes
10
replies
3.5k
views
Tophat 'prep_reads error": beginning of quality values record not found!
RNA-Seq
fastq
tophat
updated 19 months ago by
Ram
43k • written 8.6 years ago by
mmitra
▴ 60
0
votes
1
reply
3.5k
views
Comment:
C: Tophat 'prep_reads error": beginning of quality values record not found!
8.6 years ago by
mmitra
▴ 60
0
votes
1
reply
3.5k
views
Comment:
Comment: Tophat 'prep_reads error": beginning of quality values record not found!
updated 2.6 years ago by
Ram
43k • written 8.6 years ago by
mmitra
▴ 60
0
votes
0
replies
3.3k
views
Comment:
C: How to prepare a bam file containing reads of same length?
8.7 years ago by
mmitra
▴ 60
0
votes
1
reply
3.3k
views
Comment:
C: How to prepare a bam file containing reads of same length?
8.7 years ago by
mmitra
▴ 60
2
votes
4
replies
3.3k
views
How to prepare a bam file containing reads of same length?
RNA-Seq
tophat
Bam
updated 19 months ago by
Ram
43k • written 8.7 years ago by
mmitra
▴ 60
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