Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
4
replies
8.1k
views
How to create GTF file for virus and build database for influenza virus using annovar for annotating virus variants?
variants annovar SNP
updated 2.1 years ago by 44k • written 9.0 years ago by ▴ 370
0
votes
2
replies
9.8k
views
Applying hard filters for variants
variants variant-calling GATK snps
updated 2.1 years ago by 44k • written 8.9 years ago by ▴ 370
3
votes
3
replies
3.1k
views
Do I need to download any specific adapters for Illumina small RNA sequencing kit?
Adapter trimming small RNA trimmomatic cutadapt
updated 3.5 years ago by 146k • written 7.6 years ago by ▴ 370
0
votes
1
reply
1.1k
views
Comment: C: Can we use CRAM files for Telomerecat?
3.8 years ago by bioinforesearchquestions ▴ 370
1
vote
6
replies
1.1k
views
Can we use CRAM files for Telomerecat?
whole genome sequence
3.8 years ago by bioinforesearchquestions ▴ 370
2
votes
6
replies
3.5k
views
How to create bigwig using mm10.fasta and mm10.fasta bowtie index files
bigwig wig mouse HMMcopy
updated 3.9 years ago by • 0 • written 6.6 years ago by ▴ 370
14
votes
11
replies
11k
views
How many PCs should be considered for downstream analyses?
scRNAseq PCA UMAP Clustering RNAseq
updated 4.0 years ago by ▴ 190 • written 4.6 years ago by ▴ 370
0
votes
0
replies
5.5k
views
Comment: C: How to get differential gene expression within paired samples using EdgeR or DES
4.3 years ago by bioinforesearchquestions ▴ 370
0
votes
0
replies
1.8k
views
Comment: C: How to Normalize the effect between group in bulk RNAseq?
4.5 years ago by bioinforesearchquestions ▴ 370
3
votes
13
replies
1.8k
views
How to Normalize the effect between group in bulk RNAseq?
RNA-Seq Normalize Drug treatment
4.5 years ago by bioinforesearchquestions ▴ 370
0
votes
0
replies
1.8k
views
Comment: C: How to Normalize the effect between group in bulk RNAseq?
4.5 years ago by bioinforesearchquestions ▴ 370
0
votes
1
reply
1.8k
views
Comment: C: How to Normalize the effect between group in bulk RNAseq?
4.5 years ago by bioinforesearchquestions ▴ 370
0
votes
1
reply
1.8k
views
Comment: C: How to Normalize the effect between group in bulk RNAseq?
4.5 years ago by bioinforesearchquestions ▴ 370
0
votes
0
replies
1.8k
views
Comment: C: How to Normalize the effect between group in bulk RNAseq?
4.5 years ago by bioinforesearchquestions ▴ 370
0
votes
1
reply
1.8k
views
Comment: C: How to Normalize the effect between group in bulk RNAseq?
4.5 years ago by bioinforesearchquestions ▴ 370
0
votes
1
reply
1.8k
views
Comment: C: How to Normalize the effect between group in bulk RNAseq?
4.5 years ago by bioinforesearchquestions ▴ 370
0
votes
0
replies
4.6k
views
Comment: C: Tutorials: Trajectory analysis using Velocity
4.5 years ago by bioinforesearchquestions ▴ 370
3
votes
2
replies
4.6k
views
Tutorials: Trajectory analysis using Velocity
singlecell 10X velocity trajectory
4.5 years ago by bioinforesearchquestions ▴ 370
10
votes
7
replies
2.9k
views
Help required for Bacterial RNAseq data
RNAseq gene expression
updated 4.5 years ago by ▴ 10 • written 7.1 years ago by ▴ 370
8
votes
5
replies
6.9k
views
Downsampling one of the sample on the UMAP clustering to match the number of cells of the other group
scRNAseq UMAP downsampling RNAseq
updated 4.6 years ago by ★ 17k • written 4.6 years ago by ▴ 370
0
votes
1
reply
6.9k
views
Comment: C: Downsampling one of the sample on the UMAP clustering to match the number of cel
4.6 years ago by bioinforesearchquestions ▴ 370
0
votes
1
reply
6.9k
views
Comment: C: Downsampling one of the sample on the UMAP clustering to match the number of cel
4.6 years ago by bioinforesearchquestions ▴ 370
0
votes
1
reply
11k
views
Comment: C: How many PCs should be considered for downstream analyses?
4.6 years ago by bioinforesearchquestions ▴ 370
0
votes
0
replies
11k
views
Comment: C: How many PCs should be considered for downstream analyses?
4.6 years ago by bioinforesearchquestions ▴ 370
0
votes
1
reply
12k
views
Comment: C: How to extract fasta sequence of a gene from BAM files generated using Miseq seq
updated 4.7 years ago by 44k • written 8.7 years ago by ▴ 370
0
votes
1
reply
12k
views
Comment: C: How to extract fasta sequence of a gene from BAM files generated using Miseq seq
updated 4.7 years ago by 44k • written 8.7 years ago by ▴ 370
0
votes
1
reply
12k
views
Comment: C: How to extract fasta sequence of a gene from BAM files generated using Miseq seq
updated 4.7 years ago by 44k • written 8.7 years ago by ▴ 370
0
votes
1
reply
12k
views
Comment: C: How to extract fasta sequence of a gene from BAM files generated using Miseq seq
updated 4.7 years ago by 44k • written 8.7 years ago by ▴ 370
0
votes
1
reply
12k
views
Comment: C: How to extract fasta sequence of a gene from BAM files generated using Miseq seq
updated 4.7 years ago by 44k • written 8.7 years ago by ▴ 370
0
votes
1
reply
12k
views
Comment: C: How to extract fasta sequence of a gene from BAM files generated using Miseq seq
updated 4.7 years ago by 44k • written 8.7 years ago by ▴ 370
0
votes
1
reply
12k
views
Comment: C: How to fetch gene sequence from Miseq sequencing files
updated 4.7 years ago by 44k • written 8.7 years ago by ▴ 370
0
votes
0
replies
10k
views
Comment: C: How To Extract Full Sequence Of A Gene From Bam Or Sam File
updated 4.7 years ago by 44k • written 8.7 years ago by ▴ 370
0
votes
0
replies
1.0k
views
How to find percentage of a gene (eg.Ppbp) for condition A and condition B from 10X Single Cell RNAseq?
single cell RNAseq 10X cellranger
updated 4.8 years ago by 20 • written 4.8 years ago by ▴ 370
0
votes
0
replies
6.5k
views
Comment: C: What is mutation calling in exome sequencing?
updated 4.8 years ago by 44k • written 8.8 years ago by ▴ 370
0
votes
1
reply
6.5k
views
Comment: C: What is mutation calling in exome sequencing?
updated 4.8 years ago by 44k • written 8.8 years ago by ▴ 370
0
votes
1
reply
3.8k
views
Comment: C: Is there any differences between tophat, cufflinks command with and without GTF
updated 4.8 years ago by 44k • written 8.9 years ago by ▴ 370
0
votes
1
reply
3.8k
views
Comment: C: Is there any differences between tophat, cufflinks command with and without GTF
updated 4.8 years ago by 44k • written 8.9 years ago by ▴ 370
0
votes
1
reply
3.8k
views
Comment: C: Is there any differences between tophat, cufflinks command with and without GTF
updated 4.9 years ago by 44k • written 8.9 years ago by ▴ 370
0
votes
1
reply
3.8k
views
Comment: C: Is there any differences between tophat, cufflinks command with and without GTF
updated 4.9 years ago by 44k • written 8.9 years ago by ▴ 370
0
votes
1
reply
2.3k
views
Comment: C: How to filter and annotate variants for influenza virus?
updated 4.9 years ago by 44k • written 8.9 years ago by ▴ 370
0
votes
0
replies
8.1k
views
Comment: C: How to create GTF file for virus and build database for influenza virus using an
updated 4.9 years ago by 44k • written 9.0 years ago by ▴ 370
0
votes
1
reply
5.8k
views
Comment: C: Could not find rRNA genes (28S, 18S, 5.8S and 5S) in human_genes.gtf file?
updated 4.9 years ago by 44k • written 9.0 years ago by ▴ 370
0
votes
0
replies
13k
views
Comment: C: Where Can I Get Annovar 'Refgene' Format?
updated 4.9 years ago by 44k • written 9.0 years ago by ▴ 370
0
votes
1
reply
5.8k
views
Comment: C: Could not find rRNA genes (28S, 18S, 5.8S and 5S) in human_genes.gtf file?
updated 4.9 years ago by 44k • written 9.0 years ago by ▴ 370
0
votes
0
replies
4.7k
views
Comment: C: How do you find the percentage of reads contaminated by rRNA?
updated 4.9 years ago by 44k • written 9.0 years ago by ▴ 370
0
votes
0
replies
3.0k
views
Comment: C: Comparing the WG sequenced isolate against the other same genus isolates on the
5.1 years ago by bioinforesearchquestions ▴ 370
0
votes
1
reply
3.0k
views
Comment: C: Comparing the WG sequenced isolate against the other same genus isolates on the
5.1 years ago by bioinforesearchquestions ▴ 370
0
votes
1
reply
3.0k
views
Comment: C: Comparing the WG sequenced isolate against the other same genus isolates on the
5.1 years ago by bioinforesearchquestions ▴ 370
0
votes
1
reply
3.0k
views
Comment: C: Comparing the WG sequenced isolate against the other same genus isolates on the
5.1 years ago by bioinforesearchquestions ▴ 370
0
votes
1
reply
3.0k
views
Comment: C: Comparing the WG sequenced isolate against the other same genus isolates on the
5.1 years ago by bioinforesearchquestions ▴ 370
285 results • Page 1 of 6
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6