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How to create GTF file for virus and build database for influenza virus using annovar for annotating virus variants?
variants annovar SNP
updated 15 months ago by 41k • written 8.1 years ago by ▴ 370
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2
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8.9k
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Applying hard filters for variants
variants variant-calling GATK snps
updated 15 months ago by 41k • written 8.1 years ago by ▴ 370
3
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3
replies
2.9k
views
Do I need to download any specific adapters for Illumina small RNA sequencing kit?
Adapter trimming small RNA trimmomatic cutadapt
updated 2.6 years ago by 136k • written 6.7 years ago by ▴ 370
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1
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815
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Comment: C: Can we use CRAM files for Telomerecat?
3.0 years ago by bioinforesearchquestions ▴ 370
1
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6
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815
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Can we use CRAM files for Telomerecat?
whole genome sequence
3.0 years ago by bioinforesearchquestions ▴ 370
2
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6
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3.1k
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How to create bigwig using mm10.fasta and mm10.fasta bowtie index files
bigwig wig mouse HMMcopy
updated 3.1 years ago by • 0 • written 5.8 years ago by ▴ 370
14
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11
replies
9.8k
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How many PCs should be considered for downstream analyses?
scRNAseq PCA UMAP Clustering RNAseq
updated 3.2 years ago by ▴ 170 • written 3.8 years ago by ▴ 370
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0
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4.1k
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Comment: C: How to get differential gene expression within paired samples using EdgeR or DES
3.5 years ago by bioinforesearchquestions ▴ 370
0
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0
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1.3k
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Comment: C: How to Normalize the effect between group in bulk RNAseq?
3.6 years ago by bioinforesearchquestions ▴ 370
3
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13
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1.3k
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How to Normalize the effect between group in bulk RNAseq?
RNA-Seq Normalize Drug treatment
3.6 years ago by bioinforesearchquestions ▴ 370
0
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0
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1.3k
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Comment: C: How to Normalize the effect between group in bulk RNAseq?
3.6 years ago by bioinforesearchquestions ▴ 370
0
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1
reply
1.3k
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Comment: C: How to Normalize the effect between group in bulk RNAseq?
3.6 years ago by bioinforesearchquestions ▴ 370
0
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1
reply
1.3k
views
Comment: C: How to Normalize the effect between group in bulk RNAseq?
3.6 years ago by bioinforesearchquestions ▴ 370
0
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0
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1.3k
views
Comment: C: How to Normalize the effect between group in bulk RNAseq?
3.6 years ago by bioinforesearchquestions ▴ 370
0
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1
reply
1.3k
views
Comment: C: How to Normalize the effect between group in bulk RNAseq?
3.6 years ago by bioinforesearchquestions ▴ 370
0
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1
reply
1.3k
views
Comment: C: How to Normalize the effect between group in bulk RNAseq?
3.6 years ago by bioinforesearchquestions ▴ 370
0
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0
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4.4k
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Comment: C: Tutorials: Trajectory analysis using Velocity
3.6 years ago by bioinforesearchquestions ▴ 370
3
votes
2
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4.4k
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Tutorials: Trajectory analysis using Velocity
singlecell 10X velocity trajectory
3.6 years ago by bioinforesearchquestions ▴ 370
10
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7
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2.5k
views
Help required for Bacterial RNAseq data
RNAseq gene expression
updated 3.7 years ago by ▴ 10 • written 6.3 years ago by ▴ 370
8
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5
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5.7k
views
Downsampling one of the sample on the UMAP clustering to match the number of cells of the other group
scRNAseq UMAP downsampling RNAseq
updated 3.8 years ago by ★ 16k • written 3.8 years ago by ▴ 370
0
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1
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5.7k
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Comment: C: Downsampling one of the sample on the UMAP clustering to match the number of cel
3.8 years ago by bioinforesearchquestions ▴ 370
0
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1
reply
5.7k
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Comment: C: Downsampling one of the sample on the UMAP clustering to match the number of cel
3.8 years ago by bioinforesearchquestions ▴ 370
0
votes
1
reply
9.8k
views
Comment: C: How many PCs should be considered for downstream analyses?
3.8 years ago by bioinforesearchquestions ▴ 370
0
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0
replies
9.8k
views
Comment: C: How many PCs should be considered for downstream analyses?
3.8 years ago by bioinforesearchquestions ▴ 370
0
votes
1
reply
10k
views
Comment: C: How to extract fasta sequence of a gene from BAM files generated using Miseq seq
updated 3.9 years ago by 41k • written 7.8 years ago by ▴ 370
0
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1
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10k
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Comment: C: How to extract fasta sequence of a gene from BAM files generated using Miseq seq
updated 3.9 years ago by 41k • written 7.8 years ago by ▴ 370
0
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1
reply
10k
views
Comment: C: How to extract fasta sequence of a gene from BAM files generated using Miseq seq
updated 3.9 years ago by 41k • written 7.8 years ago by ▴ 370
0
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1
reply
10k
views
Comment: C: How to extract fasta sequence of a gene from BAM files generated using Miseq seq
updated 3.9 years ago by 41k • written 7.8 years ago by ▴ 370
0
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1
reply
10k
views
Comment: C: How to extract fasta sequence of a gene from BAM files generated using Miseq seq
updated 3.9 years ago by 41k • written 7.8 years ago by ▴ 370
0
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1
reply
10k
views
Comment: C: How to extract fasta sequence of a gene from BAM files generated using Miseq seq
updated 3.9 years ago by 41k • written 7.8 years ago by ▴ 370
0
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1
reply
10k
views
Comment: C: How to fetch gene sequence from Miseq sequencing files
updated 3.9 years ago by 41k • written 7.8 years ago by ▴ 370
0
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0
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9.8k
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Comment: C: How To Extract Full Sequence Of A Gene From Bam Or Sam File
updated 3.9 years ago by 41k • written 7.8 years ago by ▴ 370
0
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0
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887
views
How to find percentage of a gene (eg.Ppbp) for condition A and condition B from 10X Single Cell RNAseq?
single cell RNAseq 10X cellranger
updated 3.9 years ago by 20 • written 4.0 years ago by ▴ 370
0
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0
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6.0k
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Comment: C: What is mutation calling in exome sequencing?
updated 4.0 years ago by 41k • written 8.0 years ago by ▴ 370
0
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1
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6.0k
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Comment: C: What is mutation calling in exome sequencing?
updated 4.0 years ago by 41k • written 8.0 years ago by ▴ 370
0
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1
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3.4k
views
Comment: C: Is there any differences between tophat, cufflinks command with and without GTF
updated 4.0 years ago by 41k • written 8.1 years ago by ▴ 370
0
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1
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3.4k
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Comment: C: Is there any differences between tophat, cufflinks command with and without GTF
updated 4.0 years ago by 41k • written 8.1 years ago by ▴ 370
0
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1
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3.4k
views
Comment: C: Is there any differences between tophat, cufflinks command with and without GTF
updated 4.0 years ago by 41k • written 8.1 years ago by ▴ 370
0
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1
reply
3.4k
views
Comment: C: Is there any differences between tophat, cufflinks command with and without GTF
updated 4.0 years ago by 41k • written 8.1 years ago by ▴ 370
0
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1
reply
2.1k
views
Comment: C: How to filter and annotate variants for influenza virus?
updated 4.0 years ago by 41k • written 8.1 years ago by ▴ 370
0
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0
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7.5k
views
Comment: C: How to create GTF file for virus and build database for influenza virus using an
updated 4.0 years ago by 41k • written 8.1 years ago by ▴ 370
0
votes
1
reply
5.3k
views
Comment: C: Could not find rRNA genes (28S, 18S, 5.8S and 5S) in human_genes.gtf file?
updated 4.0 years ago by 41k • written 8.1 years ago by ▴ 370
0
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0
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12k
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Comment: C: Where Can I Get Annovar 'Refgene' Format?
updated 4.0 years ago by 41k • written 8.1 years ago by ▴ 370
0
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1
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5.3k
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Comment: C: Could not find rRNA genes (28S, 18S, 5.8S and 5S) in human_genes.gtf file?
updated 4.0 years ago by 41k • written 8.1 years ago by ▴ 370
0
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0
replies
4.4k
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Comment: C: How do you find the percentage of reads contaminated by rRNA?
updated 4.1 years ago by 41k • written 8.1 years ago by ▴ 370
0
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0
replies
2.3k
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Comment: C: Comparing the WG sequenced isolate against the other same genus isolates on the
4.3 years ago by bioinforesearchquestions ▴ 370
0
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1
reply
2.3k
views
Comment: C: Comparing the WG sequenced isolate against the other same genus isolates on the
4.3 years ago by bioinforesearchquestions ▴ 370
0
votes
1
reply
2.3k
views
Comment: C: Comparing the WG sequenced isolate against the other same genus isolates on the
4.3 years ago by bioinforesearchquestions ▴ 370
0
votes
1
reply
2.3k
views
Comment: C: Comparing the WG sequenced isolate against the other same genus isolates on the
4.3 years ago by bioinforesearchquestions ▴ 370
0
votes
1
reply
2.3k
views
Comment: C: Comparing the WG sequenced isolate against the other same genus isolates on the
4.3 years ago by bioinforesearchquestions ▴ 370
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