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How to create GTF file for virus and build database for influenza virus using annovar for annotating virus variants?
variants annovar SNP
updated 2.1 years ago by 44k • written 9.0 years ago by ▴ 370
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2
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9.8k
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Applying hard filters for variants
variants variant-calling GATK snps
updated 2.1 years ago by 44k • written 8.9 years ago by ▴ 370
3
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3
replies
3.1k
views
Do I need to download any specific adapters for Illumina small RNA sequencing kit?
Adapter trimming small RNA trimmomatic cutadapt
updated 3.5 years ago by 146k • written 7.6 years ago by ▴ 370
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1
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1.1k
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Comment: C: Can we use CRAM files for Telomerecat?
3.8 years ago by bioinforesearchquestions ▴ 370
1
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6
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1.1k
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Can we use CRAM files for Telomerecat?
whole genome sequence
3.8 years ago by bioinforesearchquestions ▴ 370
2
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6
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3.5k
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How to create bigwig using mm10.fasta and mm10.fasta bowtie index files
bigwig wig mouse HMMcopy
updated 3.9 years ago by • 0 • written 6.6 years ago by ▴ 370
14
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11
replies
11k
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How many PCs should be considered for downstream analyses?
scRNAseq PCA UMAP Clustering RNAseq
updated 4.0 years ago by ▴ 190 • written 4.6 years ago by ▴ 370
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0
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5.5k
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Comment: C: How to get differential gene expression within paired samples using EdgeR or DES
4.3 years ago by bioinforesearchquestions ▴ 370
0
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0
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1.8k
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Comment: C: How to Normalize the effect between group in bulk RNAseq?
4.5 years ago by bioinforesearchquestions ▴ 370
3
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13
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1.8k
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How to Normalize the effect between group in bulk RNAseq?
RNA-Seq Normalize Drug treatment
4.5 years ago by bioinforesearchquestions ▴ 370
0
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0
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1.8k
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Comment: C: How to Normalize the effect between group in bulk RNAseq?
4.5 years ago by bioinforesearchquestions ▴ 370
0
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1
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1.8k
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Comment: C: How to Normalize the effect between group in bulk RNAseq?
4.5 years ago by bioinforesearchquestions ▴ 370
0
votes
1
reply
1.8k
views
Comment: C: How to Normalize the effect between group in bulk RNAseq?
4.5 years ago by bioinforesearchquestions ▴ 370
0
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0
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1.8k
views
Comment: C: How to Normalize the effect between group in bulk RNAseq?
4.5 years ago by bioinforesearchquestions ▴ 370
0
votes
1
reply
1.8k
views
Comment: C: How to Normalize the effect between group in bulk RNAseq?
4.5 years ago by bioinforesearchquestions ▴ 370
0
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1
reply
1.8k
views
Comment: C: How to Normalize the effect between group in bulk RNAseq?
4.5 years ago by bioinforesearchquestions ▴ 370
0
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0
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4.6k
views
Comment: C: Tutorials: Trajectory analysis using Velocity
4.5 years ago by bioinforesearchquestions ▴ 370
3
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2
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4.6k
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Tutorials: Trajectory analysis using Velocity
singlecell 10X velocity trajectory
4.5 years ago by bioinforesearchquestions ▴ 370
10
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7
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2.9k
views
Help required for Bacterial RNAseq data
RNAseq gene expression
updated 4.5 years ago by ▴ 10 • written 7.1 years ago by ▴ 370
8
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5
replies
6.9k
views
Downsampling one of the sample on the UMAP clustering to match the number of cells of the other group
scRNAseq UMAP downsampling RNAseq
updated 4.6 years ago by ★ 17k • written 4.6 years ago by ▴ 370
0
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1
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6.9k
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Comment: C: Downsampling one of the sample on the UMAP clustering to match the number of cel
4.6 years ago by bioinforesearchquestions ▴ 370
0
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1
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6.9k
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Comment: C: Downsampling one of the sample on the UMAP clustering to match the number of cel
4.6 years ago by bioinforesearchquestions ▴ 370
0
votes
1
reply
11k
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Comment: C: How many PCs should be considered for downstream analyses?
4.6 years ago by bioinforesearchquestions ▴ 370
0
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0
replies
11k
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Comment: C: How many PCs should be considered for downstream analyses?
4.6 years ago by bioinforesearchquestions ▴ 370
0
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1
reply
12k
views
Comment: C: How to extract fasta sequence of a gene from BAM files generated using Miseq seq
updated 4.7 years ago by 44k • written 8.7 years ago by ▴ 370
0
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1
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12k
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Comment: C: How to extract fasta sequence of a gene from BAM files generated using Miseq seq
updated 4.7 years ago by 44k • written 8.7 years ago by ▴ 370
0
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1
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12k
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Comment: C: How to extract fasta sequence of a gene from BAM files generated using Miseq seq
updated 4.7 years ago by 44k • written 8.7 years ago by ▴ 370
0
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1
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12k
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Comment: C: How to extract fasta sequence of a gene from BAM files generated using Miseq seq
updated 4.7 years ago by 44k • written 8.7 years ago by ▴ 370
0
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1
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12k
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Comment: C: How to extract fasta sequence of a gene from BAM files generated using Miseq seq
updated 4.7 years ago by 44k • written 8.7 years ago by ▴ 370
0
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1
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12k
views
Comment: C: How to extract fasta sequence of a gene from BAM files generated using Miseq seq
updated 4.7 years ago by 44k • written 8.7 years ago by ▴ 370
0
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1
reply
12k
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Comment: C: How to fetch gene sequence from Miseq sequencing files
updated 4.7 years ago by 44k • written 8.7 years ago by ▴ 370
0
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0
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10k
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Comment: C: How To Extract Full Sequence Of A Gene From Bam Or Sam File
updated 4.7 years ago by 44k • written 8.7 years ago by ▴ 370
0
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0
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1.0k
views
How to find percentage of a gene (eg.Ppbp) for condition A and condition B from 10X Single Cell RNAseq?
single cell RNAseq 10X cellranger
updated 4.8 years ago by 20 • written 4.8 years ago by ▴ 370
0
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0
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6.5k
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Comment: C: What is mutation calling in exome sequencing?
updated 4.8 years ago by 44k • written 8.8 years ago by ▴ 370
0
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1
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6.5k
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Comment: C: What is mutation calling in exome sequencing?
updated 4.8 years ago by 44k • written 8.8 years ago by ▴ 370
0
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1
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3.8k
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Comment: C: Is there any differences between tophat, cufflinks command with and without GTF
updated 4.8 years ago by 44k • written 8.9 years ago by ▴ 370
0
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1
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3.8k
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Comment: C: Is there any differences between tophat, cufflinks command with and without GTF
updated 4.8 years ago by 44k • written 8.9 years ago by ▴ 370
0
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1
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3.8k
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Comment: C: Is there any differences between tophat, cufflinks command with and without GTF
updated 4.9 years ago by 44k • written 8.9 years ago by ▴ 370
0
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1
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3.8k
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Comment: C: Is there any differences between tophat, cufflinks command with and without GTF
updated 4.9 years ago by 44k • written 8.9 years ago by ▴ 370
0
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1
reply
2.3k
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Comment: C: How to filter and annotate variants for influenza virus?
updated 4.9 years ago by 44k • written 8.9 years ago by ▴ 370
0
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0
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8.1k
views
Comment: C: How to create GTF file for virus and build database for influenza virus using an
updated 4.9 years ago by 44k • written 9.0 years ago by ▴ 370
0
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1
reply
5.8k
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Comment: C: Could not find rRNA genes (28S, 18S, 5.8S and 5S) in human_genes.gtf file?
updated 4.9 years ago by 44k • written 9.0 years ago by ▴ 370
0
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0
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13k
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Comment: C: Where Can I Get Annovar 'Refgene' Format?
updated 4.9 years ago by 44k • written 9.0 years ago by ▴ 370
0
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1
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5.8k
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Comment: C: Could not find rRNA genes (28S, 18S, 5.8S and 5S) in human_genes.gtf file?
updated 4.9 years ago by 44k • written 9.0 years ago by ▴ 370
0
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0
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4.7k
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Comment: C: How do you find the percentage of reads contaminated by rRNA?
updated 4.9 years ago by 44k • written 9.0 years ago by ▴ 370
0
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0
replies
3.0k
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Comment: C: Comparing the WG sequenced isolate against the other same genus isolates on the
5.1 years ago by bioinforesearchquestions ▴ 370
0
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1
reply
3.0k
views
Comment: C: Comparing the WG sequenced isolate against the other same genus isolates on the
5.1 years ago by bioinforesearchquestions ▴ 370
0
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1
reply
3.0k
views
Comment: C: Comparing the WG sequenced isolate against the other same genus isolates on the
5.1 years ago by bioinforesearchquestions ▴ 370
0
votes
1
reply
3.0k
views
Comment: C: Comparing the WG sequenced isolate against the other same genus isolates on the
5.1 years ago by bioinforesearchquestions ▴ 370
0
votes
1
reply
3.0k
views
Comment: C: Comparing the WG sequenced isolate against the other same genus isolates on the
5.1 years ago by bioinforesearchquestions ▴ 370
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