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10
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9
replies
6.4k
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How to cluster the upregulated and downregulated genes in heatmap?
RNA-SEQ heatmap
updated 6.6 years ago by 87k • written 6.6 years ago by ▴ 370
0
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1
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6.4k
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Comment: C: How to cluster the upregulated and downregulated genes in heatmap?
6.6 years ago by bioinforesearchquestions ▴ 370
3
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2
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1.8k
views
Tools to generate coverage plots for the sequenced virus reads
coverage SNP DNAseq Virus
updated 6.6 years ago by 20k • written 6.6 years ago by ▴ 370
0
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0
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2.4k
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Comment: C: How do I change the settings in qualimap (bamqc) to consider only the exome leng
6.6 years ago by bioinforesearchquestions ▴ 370
0
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1
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6.4k
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Comment: C: How to cluster the upregulated and downregulated genes in heatmap?
6.6 years ago by bioinforesearchquestions ▴ 370
0
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1
reply
6.4k
views
Comment: C: How to cluster the upregulated and downregulated genes in heatmap?
6.6 years ago by bioinforesearchquestions ▴ 370
0
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1
reply
1.9k
views
How to generate heatmap for differentially expressed genes based on the pathway?
RNA-SEQ heatmap differential expression
6.6 years ago by bioinforesearchquestions ▴ 370
0
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1
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1.6k
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Comment: C: At which position, should I expect a peak for miRNA sequenced FASTQ reads?
6.6 years ago by bioinforesearchquestions ▴ 370
0
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3
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1.6k
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At which position, should I expect a peak for miRNA sequenced FASTQ reads?
miRNA RNA-seq smallRNA FASTQ
6.6 years ago by bioinforesearchquestions ▴ 370
0
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0
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2.7k
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Comment: C: What is the acceptable percentage of reads with adapters sequenced in miRNA sequ
6.6 years ago by bioinforesearchquestions ▴ 370
0
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1
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2.7k
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Comment: C: What is the acceptable percentage of reads with adapters sequenced in miRNA sequ
6.6 years ago by bioinforesearchquestions ▴ 370
0
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1
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2.7k
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Comment: C: What is the acceptable percentage of reads with adapters sequenced in miRNA sequ
6.6 years ago by bioinforesearchquestions ▴ 370
2
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8
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2.7k
views
What is the acceptable percentage of reads with adapters sequenced in miRNA sequencing?
miRNA RNA-Seq smallRNA adapters Reads
6.6 years ago by bioinforesearchquestions ▴ 370
0
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1
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2.7k
views
Comment: C: What is the acceptable percentage of reads with adapters sequenced in miRNA sequ
6.6 years ago by bioinforesearchquestions ▴ 370
0
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1
reply
2.5k
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Comment: C: Is there any recommended steps/pipeline for identifying differential miRNA expre
6.6 years ago by bioinforesearchquestions ▴ 370
0
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0
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11k
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Comment: C: Difference between CPM and RPM for RNA-seq reada quantification
6.6 years ago by bioinforesearchquestions ▴ 370
0
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0
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1.1k
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Do I have to compared sequenced miRNA reads against bovine miRNA from miRBase mature.fa sequence or entire bovine genome?
miRNA small RNA RNA-seq
6.7 years ago by bioinforesearchquestions ▴ 370
6
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2
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3.0k
views
Which tool is recommended for detecting CNVs in whole exome sequencing?
CNVs WES whole exome sequencing
6.7 years ago by bioinforesearchquestions ▴ 370
1
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1
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2.5k
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Comment: C: Is there any recommended steps/pipeline for identifying differential miRNA expre
6.7 years ago by bioinforesearchquestions ▴ 370
0
votes
1
reply
11k
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Comment: C: Difference between CPM and RPM for RNA-seq reada quantification
6.7 years ago by bioinforesearchquestions ▴ 370
3
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5
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2.5k
views
Is there any recommended steps/pipeline for identifying differential miRNA expression profile?
RNA-seq miRNA small RNA
6.7 years ago by bioinforesearchquestions ▴ 370
0
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1
reply
11k
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Comment: C: Difference between CPM and RPM for RNA-seq reada quantification
6.7 years ago by bioinforesearchquestions ▴ 370
0
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1
reply
2.7k
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Comment: C: Help required for Bacterial RNAseq data
6.7 years ago by bioinforesearchquestions ▴ 370
0
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1
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2.2k
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How to filter out variants based on the population frequency
SNPs variants DNASeq Allele-frequency
updated 6.7 years ago by • 0 • written 7.7 years ago by ▴ 370
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0
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5.0k
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Comment: C: Where to download fasta sequence of ribosomal RNAs for human build 37
6.7 years ago by bioinforesearchquestions ▴ 370
2
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2
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5.0k
views
Where to download fasta sequence of ribosomal RNAs for human build 37
sequencing alignment ribosomal rnas genome
6.7 years ago by bioinforesearchquestions ▴ 370
0
votes
0
replies
1.8k
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How to compare genotype calls of the SNPS on chrom X for the GWAS samples between plink file vs Affymetrix genotype output file?
Affymetrix Plink PED Genotype GWAS
updated 6.8 years ago by 20 • written 6.8 years ago by ▴ 370
0
votes
0
replies
1.4k
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Is there any tool to extract LD SNPs based on any other databases (except 1K database)?
snps LD 1000Genome mutations
6.9 years ago by bioinforesearchquestions ▴ 370
0
votes
1
reply
3.3k
views
Error while converting VCF output file from ERDS using convert2annovar.pl program
RNA-Seq sequencing next-gen SNP
updated 6.9 years ago by • 0 • written 7.5 years ago by ▴ 370
0
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0
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2.2k
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Comment: C: When I am trying to copy 9GB BAM files to the hard disk, the copied BAM file has
7.0 years ago by bioinforesearchquestions ▴ 370
0
votes
0
replies
2.2k
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Comment: C: When I am trying to copy 9GB BAM files to the hard disk, the copied BAM file has
7.0 years ago by bioinforesearchquestions ▴ 370
0
votes
1
reply
2.2k
views
Comment: C: When I am trying to copy 9GB BAM files to the hard disk, the copied BAM file has
7.0 years ago by bioinforesearchquestions ▴ 370
0
votes
1
reply
2.2k
views
Comment: C: When I am trying to copy 9GB BAM files to the hard disk, the copied BAM file has
7.0 years ago by bioinforesearchquestions ▴ 370
8
votes
9
replies
2.2k
views
When I am trying to copy 9GB BAM files to the hard disk, the copied BAM file has only 4GB.What could be the issue?
BAM Alignment DNASeq
7.0 years ago by bioinforesearchquestions ▴ 370
1
vote
1
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2.0k
views
Comment: C: What kind of filtering can be applied to reduce my exonic variants?
7.1 years ago by bioinforesearchquestions ▴ 370
0
votes
1
reply
1.3k
views
Comment: C: Tips for miRNA-Seq analysis
7.1 years ago by bioinforesearchquestions ▴ 370
0
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0
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2.0k
views
Answer: A: What kind of filtering can be applied to reduce my exonic variants?
7.1 years ago by bioinforesearchquestions ▴ 370
0
votes
1
reply
2.0k
views
Comment: C: What kind of filtering can be applied to reduce my exonic variants?
7.1 years ago by bioinforesearchquestions ▴ 370
0
votes
0
replies
14k
views
Comment: C: How to find On-Target and Off-Targer percentage of reads?
7.1 years ago by bioinforesearchquestions ▴ 370
0
votes
0
replies
3.5k
views
Comment: C: How to cluster reads within the fastq file? Is their any tool?
7.1 years ago by bioinforesearchquestions ▴ 370
0
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0
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3.5k
views
Comment: C: How to cluster reads within the fastq file? Is their any tool?
7.1 years ago by bioinforesearchquestions ▴ 370
0
votes
1
reply
3.5k
views
Comment: C: How to cluster reads within the fastq file? Is their any tool?
7.1 years ago by bioinforesearchquestions ▴ 370
2
votes
8
replies
3.5k
views
How to cluster reads within the fastq file? Is their any tool?
alignment Assembly clustering fastq reads
updated 7.1 years ago by 35k • written 7.1 years ago by ▴ 370
0
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1
reply
3.5k
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Comment: C: How to cluster reads within the fastq file? Is their any tool?
7.1 years ago by bioinforesearchquestions ▴ 370
0
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1
reply
2.0k
views
Comment: C: cluster and determine frequency of reads in fastq file
7.1 years ago by bioinforesearchquestions ▴ 370
0
votes
0
replies
1.3k
views
Comment: C: miR KEGG enrichment in Arabidopsis
7.1 years ago by bioinforesearchquestions ▴ 370
0
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1
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1.3k
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Comment: C: miR KEGG enrichment in Arabidopsis
7.1 years ago by bioinforesearchquestions ▴ 370
0
votes
0
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1.6k
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mirBase mature microRNA sequences have base U instead of base T. Should I change or not?
mirBase small RNA bowtie2 alignment
7.1 years ago by bioinforesearchquestions ▴ 370
0
votes
0
replies
14k
views
Comment: C: How to find On-Target and Off-Targer percentage of reads?
7.1 years ago by bioinforesearchquestions ▴ 370
0
votes
0
replies
14k
views
Comment: C: How to find On-Target and Off-Targer percentage of reads?
7.1 years ago by bioinforesearchquestions ▴ 370
285 results • Page 4 of 6
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