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1
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0
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936
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Can any tool distinguishs immune inflammation / immune excluded phenotype?
RNA-Seq TCR-Seq ESTIMATE
5.6 years ago by CY ▴ 750
3
votes
1
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2.8k
views
Driver mutation vs biomarker vs recurrent mutation
Driver mutation biomarker mutation VAF
updated 5.6 years ago by 87k • written 5.6 years ago by ▴ 750
0
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1
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1.2k
views
Why not simple Gaussian model instead of Gaussian mixture for VQSR?
VQSR GATK
updated 5.8 years ago by 20 • written 5.9 years ago by ▴ 750
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1
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12k
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Comment: C: Interesting bioinformatics blogs (2017 edition)
5.9 years ago by CY ▴ 750
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0
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5.0k
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Comment: C: Your Favorite Bioinformatics Blogs (October 2011)
5.9 years ago by CY ▴ 750
1
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0
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23k
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Answer: A: Your Favorite Bioinformatics Blogs (March 2010)
5.9 years ago by CY ▴ 750
0
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0
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9.9k
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Answer: A: Your Favorite Bioinformatics Blog(S) (2013 Edition)
5.9 years ago by CY ▴ 750
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0
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1.2k
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Comment: C: Why VarScan always get more somatic variants than other caller
5.9 years ago by CY ▴ 750
0
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1
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1.2k
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Comment: C: Why VarScan always get more somatic variants than other caller
5.9 years ago by CY ▴ 750
0
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1
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1.2k
views
Comment: C: Why VarScan always get more somatic variants than other caller
5.9 years ago by CY ▴ 750
0
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6
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1.2k
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Why VarScan always get more somatic variants than other caller
Variant VarScan
5.9 years ago by CY ▴ 750
0
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1
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3.9k
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Comment: C: Immunotherapy tools for predicting binding affinity between TCR and epitode
5.9 years ago by CY ▴ 750
1
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1
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1.2k
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R plot.DNAcopy with x-axis showing chromosome instead of chromosome coordinate
RNA-Seq CNV DNAcopy
5.9 years ago by CY ▴ 750
0
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1
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1.9k
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Comment: C: SciClone: Why cluster in non-CN neutral region considering it infers only on CN
5.9 years ago by CY ▴ 750
2
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4
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1.9k
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SciClone: Why cluster in non-CN neutral region considering it infers only on CN neutral region
SciClone clonality
5.9 years ago by CY ▴ 750
0
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0
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2.1k
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Comment: C: SciClone: Which Variant to Which Clone
5.9 years ago by CY ▴ 750
0
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0
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4.0k
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Comment: C: STAR-HT-Seq/featureCount got much more gene expression count than RSEM did
6.0 years ago by CY ▴ 750
4
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7
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4.0k
views
STAR-HT-Seq/featureCount got much more gene expression count than RSEM did
RNA-Seq STAR RSEM HT-Seq gene expression
6.0 years ago by CY ▴ 750
1
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1
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4.0k
views
Answer: A: STAR-HT-Seq/featureCount got much more gene expression count than RSEM did
6.0 years ago by CY ▴ 750
0
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1
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4.0k
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Comment: C: STAR-HT-Seq/featureCount got much more gene expression count than RSEM did
6.0 years ago by CY ▴ 750
0
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1
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3.3k
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Comment: C: SciClone not numeric error
6.0 years ago by CY ▴ 750
0
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1
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18k
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Comment: C: why PCA for RNA-Seq but tSNE for scRNA-seq?
6.0 years ago by CY ▴ 750
0
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0
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1.2k
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Log-odds based filtering and pairHMM alignment during local realignment
GATK mutect Bayes
updated 6.0 years ago by 20 • written 6.1 years ago by ▴ 750
0
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0
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1.9k
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Comment: C: Inconsistency of allele depth in BAM and VCF
6.0 years ago by CY ▴ 750
3
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3
replies
1.9k
views
Inconsistency of allele depth in BAM and VCF
allele depth bam vcf variant
updated 6.0 years ago by ▴ 600 • written 6.0 years ago by ▴ 750
1
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1
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1.9k
views
CBS in CNV calling
cnv cbs
updated 6.0 years ago by 87k • written 6.0 years ago by ▴ 750
0
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0
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892
views
RNA-Seq: Expression consistency across time point
RNA-Seq expression
6.1 years ago by CY ▴ 750
0
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0
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5.0k
views
Comment: C: Lack of consensus between NGS & Sanger sequencing on indels/mutations
6.1 years ago by CY ▴ 750
0
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1
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5.0k
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Comment: C: Lack of consensus between NGS & Sanger sequencing on indels/mutations
6.1 years ago by CY ▴ 750
2
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3
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972
views
Prior probability during SNP calling
SNP
6.1 years ago by CY ▴ 750
0
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1
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2.1k
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Comment: C: call somatic CNV from cfDNA with normal control
6.1 years ago by CY ▴ 750
0
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1
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1.7k
views
Comment: C: During GO / pathway enrichment analysis, should we exclude genes not expressed i
6.1 years ago by CY ▴ 750
0
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1
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1.7k
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Comment: C: During GO / pathway enrichment analysis, should we exclude genes not expressed i
6.1 years ago by CY ▴ 750
0
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1
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1.7k
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Comment: C: During GO / pathway enrichment analysis, should we exclude genes not expressed i
6.1 years ago by CY ▴ 750
4
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2
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2.4k
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How 2-channel sequencing chemistry (Next-Seq) distinguish "G" and 'no signal'
Next-Seq QC
updated 6.1 years ago by 104k • written 6.1 years ago by ▴ 750
2
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7
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1.7k
views
During GO / pathway enrichment analysis, should we exclude genes not expressed in both groups?
RNA-Seq enrichment analysis DE analysis
6.1 years ago by CY ▴ 750
0
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1
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1.2k
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Comment: C: one sample from pool shows low quality at the end, why?
6.1 years ago by CY ▴ 750
0
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0
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1.2k
views
Comment: C: one sample from pool shows low quality at the end, why?
6.2 years ago by CY ▴ 750
0
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0
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1.2k
views
Comment: C: one sample from pool shows low quality at the end, why?
6.2 years ago by CY ▴ 750
1
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6
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1.2k
views
one sample from pool shows low quality at the end, why?
fastqc
6.2 years ago by CY ▴ 750
0
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1
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2.1k
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Comment: C: call somatic CNV from cfDNA with normal control
6.2 years ago by CY ▴ 750
2
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6
replies
2.1k
views
call somatic CNV from cfDNA with normal control
cnv somatic cfDNA
6.2 years ago by CY ▴ 750
0
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1
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2.3k
views
Comment: C: WGS coverage (depth) for CNV detection
6.2 years ago by CY ▴ 750
2
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4
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2.3k
views
WGS coverage (depth) for CNV detection
WGS CNV
updated 6.2 years ago by ★ 2.8k • written 6.2 years ago by ▴ 750
0
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0
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1.7k
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Comment: C: How representative the solid tumor sample is to that entire tumor lesion in term
6.2 years ago by CY ▴ 750
0
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1
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1.7k
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Comment: C: How representative the solid tumor sample is to that entire tumor lesion in term
6.2 years ago by CY ▴ 750
0
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6
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1.7k
views
How representative the solid tumor sample is to that entire tumor lesion in terms of somatic mutation profile
tumor somatic mutation
6.2 years ago by CY ▴ 750
0
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0
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4.0k
views
Answer: A: Can I ignore somatic mutations that are also in dbSNP when analyzing cancer-rela
6.2 years ago by CY ▴ 750
0
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0
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2.7k
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Comment: C: Reads aligning in unstranded RNA-Seq library
6.2 years ago by CY ▴ 750
3
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4
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2.7k
views
Reads aligning in unstranded RNA-Seq library
RNA-SEQ strand alignment
updated 6.2 years ago by 35k • written 6.2 years ago by ▴ 750
276 results • Page 4 of 6
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