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3
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1
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2.7k
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Driver mutation vs biomarker vs recurrent mutation
Driver mutation biomarker mutation VAF
updated 5.2 years ago by 86k • written 5.2 years ago by ▴ 730
0
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1
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1.1k
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Why not simple Gaussian model instead of Gaussian mixture for VQSR?
VQSR GATK
updated 5.4 years ago by 20 • written 5.5 years ago by ▴ 730
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1
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12k
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Comment: C: Interesting bioinformatics blogs (2017 edition)
5.4 years ago by CY ▴ 730
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0
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4.8k
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Comment: C: Your Favorite Bioinformatics Blogs (October 2011)
5.4 years ago by CY ▴ 730
1
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0
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21k
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Answer: A: Your Favorite Bioinformatics Blogs (March 2010)
5.4 years ago by CY ▴ 730
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0
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9.7k
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Answer: A: Your Favorite Bioinformatics Blog(S) (2013 Edition)
5.4 years ago by CY ▴ 730
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0
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1.1k
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Comment: C: Why VarScan always get more somatic variants than other caller
5.4 years ago by CY ▴ 730
0
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1
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1.1k
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Comment: C: Why VarScan always get more somatic variants than other caller
5.4 years ago by CY ▴ 730
0
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1
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1.1k
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Comment: C: Why VarScan always get more somatic variants than other caller
5.4 years ago by CY ▴ 730
0
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6
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1.1k
views
Why VarScan always get more somatic variants than other caller
Variant VarScan
5.4 years ago by CY ▴ 730
0
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1
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3.6k
views
Comment: C: Immunotherapy tools for predicting binding affinity between TCR and epitode
5.5 years ago by CY ▴ 730
1
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1
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1.1k
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R plot.DNAcopy with x-axis showing chromosome instead of chromosome coordinate
RNA-Seq CNV DNAcopy
5.5 years ago by CY ▴ 730
0
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1
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1.7k
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Comment: C: SciClone: Why cluster in non-CN neutral region considering it infers only on CN
5.5 years ago by CY ▴ 730
2
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4
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1.7k
views
SciClone: Why cluster in non-CN neutral region considering it infers only on CN neutral region
SciClone clonality
5.5 years ago by CY ▴ 730
0
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0
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2.0k
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Comment: C: SciClone: Which Variant to Which Clone
5.5 years ago by CY ▴ 730
0
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0
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3.7k
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Comment: C: STAR-HT-Seq/featureCount got much more gene expression count than RSEM did
5.5 years ago by CY ▴ 730
4
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7
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3.7k
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STAR-HT-Seq/featureCount got much more gene expression count than RSEM did
RNA-Seq STAR RSEM HT-Seq gene expression
5.5 years ago by CY ▴ 730
1
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1
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3.7k
views
Answer: A: STAR-HT-Seq/featureCount got much more gene expression count than RSEM did
5.5 years ago by CY ▴ 730
0
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1
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3.7k
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Comment: C: STAR-HT-Seq/featureCount got much more gene expression count than RSEM did
5.5 years ago by CY ▴ 730
0
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1
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3.1k
views
Comment: C: SciClone not numeric error
5.5 years ago by CY ▴ 730
0
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1
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17k
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Comment: C: why PCA for RNA-Seq but tSNE for scRNA-seq?
5.5 years ago by CY ▴ 730
0
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0
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1.1k
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Log-odds based filtering and pairHMM alignment during local realignment
GATK mutect Bayes
updated 5.6 years ago by 20 • written 5.7 years ago by ▴ 730
0
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0
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1.8k
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Comment: C: Inconsistency of allele depth in BAM and VCF
5.6 years ago by CY ▴ 730
3
votes
3
replies
1.8k
views
Inconsistency of allele depth in BAM and VCF
allele depth bam vcf variant
updated 5.6 years ago by ▴ 600 • written 5.6 years ago by ▴ 730
1
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1
reply
1.8k
views
CBS in CNV calling
cnv cbs
updated 5.6 years ago by 86k • written 5.6 years ago by ▴ 730
0
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0
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855
views
RNA-Seq: Expression consistency across time point
RNA-Seq expression
5.6 years ago by CY ▴ 730
0
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0
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4.6k
views
Comment: C: Lack of consensus between NGS & Sanger sequencing on indels/mutations
5.7 years ago by CY ▴ 730
0
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1
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4.6k
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Comment: C: Lack of consensus between NGS & Sanger sequencing on indels/mutations
5.7 years ago by CY ▴ 730
2
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3
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918
views
Prior probability during SNP calling
SNP
5.7 years ago by CY ▴ 730
0
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1
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2.0k
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Comment: C: call somatic CNV from cfDNA with normal control
5.7 years ago by CY ▴ 730
0
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1
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1.6k
views
Comment: C: During GO / pathway enrichment analysis, should we exclude genes not expressed i
5.7 years ago by CY ▴ 730
0
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1
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1.6k
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Comment: C: During GO / pathway enrichment analysis, should we exclude genes not expressed i
5.7 years ago by CY ▴ 730
0
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1
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1.6k
views
Comment: C: During GO / pathway enrichment analysis, should we exclude genes not expressed i
5.7 years ago by CY ▴ 730
4
votes
2
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2.3k
views
How 2-channel sequencing chemistry (Next-Seq) distinguish "G" and 'no signal'
Next-Seq QC
updated 5.7 years ago by 104k • written 5.7 years ago by ▴ 730
2
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7
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1.6k
views
During GO / pathway enrichment analysis, should we exclude genes not expressed in both groups?
RNA-Seq enrichment analysis DE analysis
5.7 years ago by CY ▴ 730
0
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1
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1.1k
views
Comment: C: one sample from pool shows low quality at the end, why?
5.7 years ago by CY ▴ 730
0
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0
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1.1k
views
Comment: C: one sample from pool shows low quality at the end, why?
5.7 years ago by CY ▴ 730
0
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0
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1.1k
views
Comment: C: one sample from pool shows low quality at the end, why?
5.7 years ago by CY ▴ 730
1
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6
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1.1k
views
one sample from pool shows low quality at the end, why?
fastqc
5.7 years ago by CY ▴ 730
0
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1
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2.0k
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Comment: C: call somatic CNV from cfDNA with normal control
5.7 years ago by CY ▴ 730
2
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6
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2.0k
views
call somatic CNV from cfDNA with normal control
cnv somatic cfDNA
5.7 years ago by CY ▴ 730
0
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1
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2.2k
views
Comment: C: WGS coverage (depth) for CNV detection
5.7 years ago by CY ▴ 730
2
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4
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2.2k
views
WGS coverage (depth) for CNV detection
WGS CNV
updated 5.7 years ago by ★ 2.8k • written 5.7 years ago by ▴ 730
0
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0
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1.6k
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Comment: C: How representative the solid tumor sample is to that entire tumor lesion in term
5.8 years ago by CY ▴ 730
0
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1
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1.6k
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Comment: C: How representative the solid tumor sample is to that entire tumor lesion in term
5.8 years ago by CY ▴ 730
0
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6
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1.6k
views
How representative the solid tumor sample is to that entire tumor lesion in terms of somatic mutation profile
tumor somatic mutation
5.8 years ago by CY ▴ 730
0
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0
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3.9k
views
Answer: A: Can I ignore somatic mutations that are also in dbSNP when analyzing cancer-rela
5.8 years ago by CY ▴ 730
0
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0
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2.5k
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Comment: C: Reads aligning in unstranded RNA-Seq library
5.8 years ago by CY ▴ 730
3
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4
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2.5k
views
Reads aligning in unstranded RNA-Seq library
RNA-SEQ strand alignment
updated 5.8 years ago by 35k • written 5.8 years ago by ▴ 730
15
votes
4
replies
12k
views
what cause poly-G from NextSeq
nextseq
updated 5.9 years ago by ★ 2.5k • written 5.9 years ago by ▴ 730
275 results • Page 4 of 6
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