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1
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0
replies
936
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Can any tool distinguishs immune inflammation / immune excluded phenotype?
RNA-Seq
TCR-Seq
ESTIMATE
5.6 years ago by
CY
▴ 750
3
votes
1
reply
2.8k
views
Driver mutation vs biomarker vs recurrent mutation
Driver mutation
biomarker
mutation
VAF
updated 5.6 years ago by
Kevin Blighe
87k • written 5.6 years ago by
CY
▴ 750
0
votes
1
reply
1.2k
views
Why not simple Gaussian model instead of Gaussian mixture for VQSR?
VQSR
GATK
updated 5.8 years ago by
Biostar
20 • written 5.9 years ago by
CY
▴ 750
0
votes
1
reply
12k
views
Comment:
C: Interesting bioinformatics blogs (2017 edition)
5.9 years ago by
CY
▴ 750
0
votes
0
replies
5.0k
views
Comment:
C: Your Favorite Bioinformatics Blogs (October 2011)
5.9 years ago by
CY
▴ 750
1
vote
0
replies
23k
views
Answer:
A: Your Favorite Bioinformatics Blogs (March 2010)
5.9 years ago by
CY
▴ 750
0
votes
0
replies
9.9k
views
Answer:
A: Your Favorite Bioinformatics Blog(S) (2013 Edition)
5.9 years ago by
CY
▴ 750
0
votes
0
replies
1.2k
views
Comment:
C: Why VarScan always get more somatic variants than other caller
5.9 years ago by
CY
▴ 750
0
votes
1
reply
1.2k
views
Comment:
C: Why VarScan always get more somatic variants than other caller
5.9 years ago by
CY
▴ 750
0
votes
1
reply
1.2k
views
Comment:
C: Why VarScan always get more somatic variants than other caller
5.9 years ago by
CY
▴ 750
0
votes
6
replies
1.2k
views
Why VarScan always get more somatic variants than other caller
Variant
VarScan
5.9 years ago by
CY
▴ 750
0
votes
1
reply
3.9k
views
Comment:
C: Immunotherapy tools for predicting binding affinity between TCR and epitode
5.9 years ago by
CY
▴ 750
1
vote
1
reply
1.2k
views
R plot.DNAcopy with x-axis showing chromosome instead of chromosome coordinate
RNA-Seq
CNV
DNAcopy
5.9 years ago by
CY
▴ 750
0
votes
1
reply
1.9k
views
Comment:
C: SciClone: Why cluster in non-CN neutral region considering it infers only on CN
5.9 years ago by
CY
▴ 750
2
votes
4
replies
1.9k
views
SciClone: Why cluster in non-CN neutral region considering it infers only on CN neutral region
SciClone
clonality
5.9 years ago by
CY
▴ 750
0
votes
0
replies
2.1k
views
Comment:
C: SciClone: Which Variant to Which Clone
5.9 years ago by
CY
▴ 750
0
votes
0
replies
4.0k
views
Comment:
C: STAR-HT-Seq/featureCount got much more gene expression count than RSEM did
6.0 years ago by
CY
▴ 750
1
vote
1
reply
4.0k
views
Answer:
A: STAR-HT-Seq/featureCount got much more gene expression count than RSEM did
6.0 years ago by
CY
▴ 750
4
votes
7
replies
4.0k
views
STAR-HT-Seq/featureCount got much more gene expression count than RSEM did
RNA-Seq
STAR
RSEM
HT-Seq
gene expression
6.0 years ago by
CY
▴ 750
0
votes
1
reply
4.0k
views
Comment:
C: STAR-HT-Seq/featureCount got much more gene expression count than RSEM did
6.0 years ago by
CY
▴ 750
0
votes
1
reply
3.3k
views
Comment:
C: SciClone not numeric error
6.0 years ago by
CY
▴ 750
0
votes
1
reply
18k
views
Comment:
C: why PCA for RNA-Seq but tSNE for scRNA-seq?
6.0 years ago by
CY
▴ 750
0
votes
0
replies
1.2k
views
Log-odds based filtering and pairHMM alignment during local realignment
GATK
mutect
Bayes
updated 6.0 years ago by
Biostar
20 • written 6.1 years ago by
CY
▴ 750
0
votes
0
replies
1.9k
views
Comment:
C: Inconsistency of allele depth in BAM and VCF
6.0 years ago by
CY
▴ 750
3
votes
3
replies
1.9k
views
Inconsistency of allele depth in BAM and VCF
allele depth
bam
vcf
variant
updated 6.0 years ago by
Noushin N
▴ 600 • written 6.0 years ago by
CY
▴ 750
1
vote
1
reply
1.9k
views
CBS in CNV calling
cnv
cbs
updated 6.0 years ago by
Kevin Blighe
87k • written 6.0 years ago by
CY
▴ 750
0
votes
0
replies
892
views
RNA-Seq: Expression consistency across time point
RNA-Seq
expression
6.1 years ago by
CY
▴ 750
0
votes
0
replies
5.0k
views
Comment:
C: Lack of consensus between NGS & Sanger sequencing on indels/mutations
6.1 years ago by
CY
▴ 750
0
votes
1
reply
5.0k
views
Comment:
C: Lack of consensus between NGS & Sanger sequencing on indels/mutations
6.1 years ago by
CY
▴ 750
2
votes
3
replies
972
views
Prior probability during SNP calling
SNP
6.1 years ago by
CY
▴ 750
0
votes
1
reply
2.1k
views
Comment:
C: call somatic CNV from cfDNA with normal control
6.1 years ago by
CY
▴ 750
0
votes
1
reply
1.7k
views
Comment:
C: During GO / pathway enrichment analysis, should we exclude genes not expressed i
6.1 years ago by
CY
▴ 750
0
votes
1
reply
1.7k
views
Comment:
C: During GO / pathway enrichment analysis, should we exclude genes not expressed i
6.1 years ago by
CY
▴ 750
0
votes
1
reply
1.7k
views
Comment:
C: During GO / pathway enrichment analysis, should we exclude genes not expressed i
6.2 years ago by
CY
▴ 750
4
votes
2
replies
2.4k
views
How 2-channel sequencing chemistry (Next-Seq) distinguish "G" and 'no signal'
Next-Seq
QC
updated 6.2 years ago by
Devon Ryan
104k • written 6.2 years ago by
CY
▴ 750
2
votes
7
replies
1.7k
views
During GO / pathway enrichment analysis, should we exclude genes not expressed in both groups?
RNA-Seq
enrichment analysis
DE analysis
6.2 years ago by
CY
▴ 750
0
votes
1
reply
1.2k
views
Comment:
C: one sample from pool shows low quality at the end, why?
6.2 years ago by
CY
▴ 750
0
votes
0
replies
1.2k
views
Comment:
C: one sample from pool shows low quality at the end, why?
6.2 years ago by
CY
▴ 750
0
votes
0
replies
1.2k
views
Comment:
C: one sample from pool shows low quality at the end, why?
6.2 years ago by
CY
▴ 750
1
vote
6
replies
1.2k
views
one sample from pool shows low quality at the end, why?
fastqc
6.2 years ago by
CY
▴ 750
0
votes
1
reply
2.1k
views
Comment:
C: call somatic CNV from cfDNA with normal control
6.2 years ago by
CY
▴ 750
2
votes
6
replies
2.1k
views
call somatic CNV from cfDNA with normal control
cnv
somatic
cfDNA
6.2 years ago by
CY
▴ 750
0
votes
1
reply
2.3k
views
Comment:
C: WGS coverage (depth) for CNV detection
6.2 years ago by
CY
▴ 750
2
votes
4
replies
2.3k
views
WGS coverage (depth) for CNV detection
WGS
CNV
updated 6.2 years ago by
Eric T.
★ 2.8k • written 6.2 years ago by
CY
▴ 750
0
votes
0
replies
1.7k
views
Comment:
C: How representative the solid tumor sample is to that entire tumor lesion in term
6.2 years ago by
CY
▴ 750
0
votes
1
reply
1.7k
views
Comment:
C: How representative the solid tumor sample is to that entire tumor lesion in term
6.2 years ago by
CY
▴ 750
0
votes
6
replies
1.7k
views
How representative the solid tumor sample is to that entire tumor lesion in terms of somatic mutation profile
tumor
somatic mutation
6.2 years ago by
CY
▴ 750
0
votes
0
replies
4.0k
views
Answer:
A: Can I ignore somatic mutations that are also in dbSNP when analyzing cancer-rela
6.2 years ago by
CY
▴ 750
0
votes
0
replies
2.7k
views
Comment:
C: Reads aligning in unstranded RNA-Seq library
6.2 years ago by
CY
▴ 750
3
votes
4
replies
2.7k
views
Reads aligning in unstranded RNA-Seq library
RNA-SEQ
strand
alignment
updated 6.2 years ago by
h.mon
35k • written 6.2 years ago by
CY
▴ 750
276 results • Page
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